Wall clock time and date at job start Fri Apr 10 2020 17:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 N 1.46502 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.34773 * 120.00392 * 270.27943 * 4 3 2 6 6 O 1.21276 * 120.00251 * 184.68523 * 5 4 3 7 7 C 1.50706 * 119.99754 * 4.68178 * 5 4 3 8 8 C 1.53002 * 109.46835 * 180.02562 * 7 5 4 9 9 C 1.52998 * 117.49678 * 243.74376 * 8 7 5 10 10 C 1.53001 * 117.49360 * 175.08606 * 8 7 5 11 11 C 1.46499 * 119.99753 * 89.99951 * 4 3 2 12 12 H 1.09002 * 110.64651 * 230.88774 * 11 4 3 13 13 C 1.55166 * 110.71911 * 107.55345 * 11 4 3 14 14 C 1.54917 * 101.57945 * 277.13789 * 13 11 4 15 15 N 1.47424 * 104.82968 * 322.98958 * 14 13 11 16 16 C 1.36943 * 125.64454 * 204.15798 * 15 14 13 17 17 H 1.07995 * 119.99811 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99761 * 359.96805 * 16 15 14 19 19 N 1.31613 * 120.00526 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99703 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46842 * 89.99523 * 20 18 16 22 22 H 1.48499 * 109.46917 * 209.99859 * 20 18 16 23 23 H 1.48506 * 109.46964 * 330.00031 * 20 18 16 24 24 C 1.47023 * 108.70819 * 24.13249 * 15 14 13 25 25 H 1.08998 * 109.46895 * 59.99581 * 1 2 3 26 26 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47031 * 300.00194 * 1 2 3 28 28 H 1.09007 * 109.47031 * 239.99806 * 2 1 3 29 29 H 1.08998 * 109.46895 * 120.00419 * 2 1 3 30 30 H 1.09003 * 109.46959 * 60.00637 * 3 2 1 31 31 H 1.08994 * 109.47098 * 299.99871 * 3 2 1 32 32 H 1.08997 * 109.47091 * 299.99977 * 7 5 4 33 33 H 1.08991 * 109.47086 * 59.99989 * 7 5 4 34 34 H 1.08994 * 115.55209 * 29.41954 * 8 7 5 35 35 H 1.09011 * 117.49697 * 0.02562 * 9 8 7 36 36 H 1.08998 * 117.49926 * 145.02268 * 9 8 7 37 37 H 1.09007 * 117.49808 * 214.97212 * 10 8 7 38 38 H 1.09004 * 117.50402 * 0.02562 * 10 8 7 39 39 H 1.08997 * 111.00399 * 35.21158 * 13 11 4 40 40 H 1.08994 * 111.00448 * 159.06377 * 13 11 4 41 41 H 1.08996 * 110.36256 * 204.15106 * 14 13 11 42 42 H 1.08996 * 110.45703 * 81.87258 * 14 13 11 43 43 H 0.97000 * 120.00301 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.87903 * 239.52197 * 24 15 14 45 45 H 1.08996 * 110.01358 * 118.42793 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1785 1.4369 1.1680 6 8 5.3882 1.5226 1.1706 7 6 3.4282 1.3242 2.4702 8 6 4.4212 1.3422 3.6340 9 6 4.5114 0.0876 4.5050 10 6 3.8471 1.3535 5.0522 11 6 4.2380 1.4422 -1.2678 12 1 4.9874 0.6507 -1.2785 13 6 4.8917 2.8259 -1.5243 14 6 3.7088 3.6209 -2.1314 15 7 2.9849 2.6432 -2.9642 16 6 2.1820 2.9439 -4.0320 17 1 1.6939 2.1519 -4.5805 18 6 1.9955 4.2667 -4.4094 19 7 2.5899 5.2319 -3.7406 20 14 0.9009 4.6768 -5.8665 21 1 -0.4944 4.8734 -5.3975 22 1 1.3854 5.9219 -6.5146 23 1 0.9413 3.5609 -6.8455 24 6 3.2682 1.2919 -2.4588 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 2.7403 2.1641 2.5670 33 1 2.8661 0.3906 2.4860 34 1 5.3408 1.9004 3.4589 35 1 3.8636 -0.7508 4.2486 36 1 5.4903 -0.1794 4.9032 37 1 4.3894 1.9188 5.8102 38 1 2.7621 1.3477 5.1561 39 1 5.2284 3.2779 -0.5914 40 1 5.7134 2.7439 -2.2358 41 1 4.0789 4.4419 -2.7454 42 1 3.0602 4.0008 -1.3421 43 1 2.4592 6.1563 -4.0041 44 1 3.7331 0.6932 -3.2421 45 1 2.3451 0.8164 -2.1275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714853812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:35 Heat of formation + Delta-G solvation = -1.784047 kcal Electronic energy + Delta-G solvation = -23287.289676 eV Core-core repulsion = 20112.689677 eV Total energy + Delta-G solvation = -3174.599999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44144 -39.20065 -37.77526 -36.76500 -34.58005 -33.26810 -31.31277 -30.37495 -28.81458 -27.39555 -26.03672 -23.22708 -23.02108 -22.52342 -21.97557 -21.10577 -19.72307 -18.92907 -18.11051 -17.70373 -16.91764 -16.64379 -16.05274 -15.68530 -15.53232 -15.19497 -14.91015 -14.40117 -14.19378 -14.12620 -13.84767 -13.57651 -13.30776 -12.95926 -12.92078 -12.82326 -12.67218 -12.46715 -12.31320 -12.22838 -12.12715 -12.01093 -11.91238 -11.77006 -11.54135 -11.48399 -11.24378 -10.90752 -10.73145 -10.59353 -9.57165 -8.88489 -7.75620 -5.20457 1.48542 1.49975 1.58692 1.68720 2.01398 2.50637 2.95075 3.35604 3.48025 3.69386 3.80716 3.86149 3.98769 4.03221 4.06896 4.17531 4.20453 4.25947 4.41367 4.55067 4.59165 4.61164 4.64430 4.68290 4.77911 4.83364 4.85389 4.92728 5.01763 5.04297 5.07025 5.07949 5.23171 5.30580 5.31046 5.38174 5.44940 5.50550 5.58437 5.69817 5.79269 6.28757 6.52426 7.10422 7.24356 7.77599 8.42313 9.26412 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.004590 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.522108 B = 6098.868703 C = 6616.221080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.595 5.595 5 C 0.509 3.491 6 O -0.581 6.581 7 C -0.098 4.098 8 C -0.162 4.162 9 C -0.176 4.176 10 C -0.164 4.164 11 C 0.145 3.855 12 H 0.085 0.915 13 C -0.139 4.139 14 C 0.169 3.831 15 N -0.616 5.616 16 C -0.234 4.234 17 H 0.085 0.915 18 C -0.064 4.064 19 N -0.950 5.950 20 Si 0.978 3.022 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.124 3.876 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.068 0.932 42 H -0.013 1.013 43 H 0.245 0.755 44 H 0.035 0.965 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -11.534 14.734 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.022 4.022 4 N -0.326 5.326 5 C 0.299 3.701 6 O -0.462 6.462 7 C -0.137 4.137 8 C -0.181 4.181 9 C -0.213 4.213 10 C -0.201 4.201 11 C 0.041 3.959 12 H 0.103 0.897 13 C -0.179 4.179 14 C 0.044 3.956 15 N -0.343 5.343 16 C -0.363 4.363 17 H 0.103 0.897 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.194 1.194 24 C -0.001 4.001 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.005 0.995 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.381 -11.337 14.595 18.634 hybrid contribution -0.193 0.807 -1.109 1.385 sum -2.574 -10.530 13.487 17.303 Atomic orbital electron populations 1.21674 0.94015 1.02573 1.02119 1.21945 0.97078 0.95359 1.02682 1.21866 0.78108 0.98484 1.03769 1.48043 1.07444 1.72219 1.04927 1.21223 0.87725 0.75010 0.86123 1.90634 1.16132 1.51497 1.87894 1.21293 0.97864 1.05701 0.88876 1.21964 1.00676 1.04115 0.91362 1.23122 1.02771 0.92001 1.03395 1.23095 1.01489 1.00727 0.94769 1.21777 0.93639 0.97140 0.83314 0.89669 1.23138 0.98262 0.96703 0.99791 1.21529 0.89648 0.92701 0.91719 1.44708 1.55024 1.01262 1.33304 1.19437 1.19890 0.92333 1.04597 0.89710 1.25591 1.02341 0.95561 1.02182 1.70074 1.48125 0.98901 1.42875 0.85076 0.78060 0.77143 0.79021 1.21237 1.22467 1.19370 1.21828 0.97148 0.88000 0.93122 0.93892 0.91155 0.91316 0.92416 0.90276 0.89024 0.91299 0.87445 0.86452 0.89408 0.87604 0.88963 0.88261 0.87051 0.92114 0.91597 0.91435 0.99500 0.94490 0.94679 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.13 -2.82 5.89 30.60 0.18 -2.64 16 3 C 0.10 2.76 4.44 86.38 0.38 3.15 16 4 N -0.59 -18.99 2.58 -791.23 -2.04 -21.03 16 5 C 0.51 15.93 7.38 87.66 0.65 16.58 16 6 O -0.58 -22.57 14.72 -3.02 -0.04 -22.61 16 7 C -0.10 -2.12 4.65 29.85 0.14 -1.98 16 8 C -0.16 -3.56 5.41 -10.79 -0.06 -3.62 16 9 C -0.18 -3.03 10.18 30.62 0.31 -2.72 16 10 C -0.16 -2.56 10.25 30.62 0.31 -2.25 16 11 C 0.15 5.39 3.17 46.18 0.15 5.54 16 12 H 0.09 3.03 8.13 -2.39 -0.02 3.01 16 13 C -0.14 -5.95 6.54 31.99 0.21 -5.74 16 14 C 0.17 8.59 5.87 86.86 0.51 9.10 16 15 N -0.62 -30.93 3.06 -691.98 -2.12 -33.05 16 16 C -0.23 -12.70 10.27 84.03 0.86 -11.84 16 17 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 19 N -0.95 -56.51 10.09 21.65 0.22 -56.29 16 20 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C 0.12 4.96 6.02 86.73 0.52 5.48 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.06 1.38 6.82 -2.38 -0.02 1.36 16 29 H 0.08 1.38 6.92 -2.39 -0.02 1.36 16 30 H 0.09 2.12 6.48 -2.39 -0.02 2.10 16 31 H 0.07 2.47 6.08 -2.39 -0.01 2.45 16 32 H 0.11 2.05 7.26 -2.39 -0.02 2.04 16 33 H 0.12 1.92 6.65 -2.39 -0.02 1.91 16 34 H 0.09 2.46 7.31 -2.39 -0.02 2.44 16 35 H 0.11 1.53 8.03 -2.38 -0.02 1.51 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.06 2.63 7.20 -2.39 -0.02 2.61 16 40 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 2.13 4.28 -2.39 -0.01 2.12 16 Total: -1.00 -67.25 347.26 4.35 -62.90 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.96 Total: 19.16 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.35 Total: 3.96 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -3.94 Total: -110.37 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.25 4.35 -62.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714853812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.115 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds