Wall clock time and date at job start Fri Apr 10 2020 17:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 5 5 N 1.46501 * 109.47600 * 295.00248 * 4 2 1 6 6 C 1.36928 * 120.00304 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00201 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99985 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00122 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47009 * 60.00116 * 10 8 6 12 12 H 1.48497 * 109.47010 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46936 * 300.00003 * 10 8 6 14 14 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 15 15 N 1.46505 * 109.47212 * 64.99775 * 14 2 1 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.55926 * 115.92576 * 297.94093 * 18 16 15 20 20 C 1.54582 * 104.64653 * 199.96877 * 19 18 16 21 21 C 1.55917 * 104.64180 * 359.97438 * 20 19 18 22 22 C 1.55930 * 105.23326 * 289.53205 * 21 20 19 23 23 C 1.55924 * 115.92188 * 62.06780 * 18 16 15 24 24 C 1.56949 * 100.65628 * 33.77801 * 21 20 19 25 25 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 27 27 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 28 28 H 1.09003 * 109.46810 * 55.00222 * 4 2 1 29 29 H 1.08998 * 109.47247 * 175.00091 * 4 2 1 30 30 H 0.97003 * 119.99573 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00103 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47153 * 304.99767 * 14 2 1 33 33 H 1.09001 * 109.46832 * 184.99958 * 14 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 15 14 2 35 35 H 1.09002 * 110.39955 * 318.76129 * 19 18 16 36 36 H 1.08999 * 110.40409 * 81.17535 * 19 18 16 37 37 H 1.09006 * 110.39992 * 241.20713 * 20 19 18 38 38 H 1.09003 * 110.49964 * 118.84045 * 20 19 18 39 39 H 1.09007 * 115.92249 * 160.03768 * 21 20 19 40 40 H 1.08997 * 110.40394 * 189.26521 * 22 21 20 41 41 H 1.09002 * 110.39850 * 311.56108 * 22 21 20 42 42 H 1.09006 * 110.40450 * 278.81863 * 23 18 16 43 43 H 1.08996 * 110.40319 * 41.23633 * 23 18 16 44 44 H 1.09002 * 112.03194 * 189.69234 * 24 21 20 45 45 H 1.09001 * 112.02491 * 63.17537 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0010 -0.4205 3.6856 7 1 2.5621 -1.3379 3.7865 8 6 1.6342 0.2967 4.8161 9 7 0.9509 1.4148 4.6930 10 14 2.1104 -0.3251 6.5120 11 1 3.5894 -0.4155 6.6087 12 1 1.6028 0.6142 7.5441 13 1 1.5169 -1.6686 6.7312 14 6 2.0401 -0.7213 -1.2492 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4132 -3.6658 17 8 2.6266 -1.4433 -3.7791 18 6 1.5973 0.3647 -4.8932 19 6 0.0645 0.5235 -5.1311 20 6 -0.0644 0.8688 -6.6323 21 6 1.4027 0.8867 -7.1600 22 6 2.0496 2.1574 -6.5288 23 6 2.1808 1.8062 -5.0063 24 6 2.0443 -0.2370 -6.2718 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 1.6054 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 1.1488 0.8596 2.3517 31 1 0.6943 1.9158 5.4830 32 1 1.6055 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2055 34 1 1.1489 0.8593 -2.3517 35 1 -0.4530 -0.4100 -4.9101 36 1 -0.3331 1.3334 -4.5194 37 1 -0.5254 1.8485 -6.7587 38 1 -0.6458 0.1064 -7.1508 39 1 1.5228 0.7763 -8.2378 40 1 3.0287 2.3442 -6.9697 41 1 1.4006 3.0223 -6.6663 42 1 1.5945 2.5018 -4.4058 43 1 3.2248 1.8192 -4.6932 44 1 3.1293 -0.2677 -6.3720 45 1 1.5936 -1.2119 -6.4574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568180867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:38 Heat of formation + Delta-G solvation = -43.807364 kcal Electronic energy + Delta-G solvation = -22097.738813 eV Core-core repulsion = 18921.316546 eV Total energy + Delta-G solvation = -3176.422266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92518 -38.79595 -36.73915 -34.34674 -32.51583 -30.74823 -30.42491 -29.62944 -27.93609 -26.47783 -25.29309 -22.81186 -22.57237 -21.60911 -20.23775 -19.75717 -18.95757 -17.43011 -16.88073 -16.02549 -15.79808 -15.30440 -15.17505 -14.83471 -14.36389 -14.07337 -13.61009 -13.15742 -12.99506 -12.91314 -12.63567 -12.45143 -12.31624 -12.09281 -12.03673 -11.59756 -11.33030 -11.30518 -11.14442 -11.05930 -10.89797 -10.74475 -10.64011 -10.53883 -10.41169 -10.29724 -10.08466 -9.76977 -9.62417 -9.00084 -8.87016 -6.92234 -5.76838 -3.05179 2.58063 3.17737 3.44808 3.48948 3.50123 4.00776 4.13447 4.21219 4.59567 4.72296 4.78773 4.82254 4.98999 5.06761 5.09621 5.10051 5.12409 5.23005 5.37232 5.39475 5.52397 5.58031 5.61579 5.63111 5.70537 5.76480 5.82352 5.88258 5.91843 5.95272 5.96507 5.99069 6.02562 6.12394 6.25446 6.39669 6.51239 6.65408 6.77747 6.87279 7.52542 7.70201 8.23256 8.42403 9.53550 10.10908 10.45825 11.46167 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041485 B = 0.002778 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.780563 B =10076.165079 C =10272.124175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.540 3.460 17 O -0.541 6.541 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.108 4.108 24 C -0.095 4.095 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 1.951 -25.101 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.372 5.372 16 C 0.326 3.674 17 O -0.418 6.418 18 C -0.108 4.108 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.126 4.126 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.133 4.133 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.274 1.112 -25.007 25.064 hybrid contribution -0.185 0.397 1.151 1.232 sum -1.459 1.509 -23.856 23.948 Atomic orbital electron populations 1.21788 0.94680 1.01923 1.01443 1.21548 0.96704 1.00475 0.94201 0.90572 1.20573 0.96598 0.94204 0.85384 1.42330 1.66967 1.27655 1.00577 1.19198 1.28735 1.05421 0.83681 0.91212 1.24733 1.01031 0.97397 0.97856 1.69644 1.43563 1.16578 1.28611 0.86251 0.78028 0.77705 0.84117 1.21262 1.21697 1.21263 1.21426 1.00111 0.95283 0.82979 1.46054 1.57484 1.27806 1.05850 1.19742 0.78979 0.84989 0.83693 1.90698 1.39923 1.24414 1.86718 1.22939 0.97588 0.96471 0.93785 1.22558 0.93056 1.01957 0.96939 1.22592 0.96377 1.01586 0.95004 1.23578 0.95063 0.95289 0.98630 1.22972 1.00794 0.97295 0.94463 1.22946 1.01177 0.93517 0.96937 1.23345 1.00710 0.97813 0.91403 0.92832 0.91164 0.93939 0.96012 0.96149 0.78214 0.93480 0.91380 0.91395 0.76567 0.91342 0.91051 0.91420 0.91563 0.88188 0.91505 0.91409 0.91053 0.91245 0.90755 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 5 N -0.73 -18.39 5.33 -59.91 -0.32 -18.71 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.94 -28.20 13.06 55.49 0.72 -27.48 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 15 N -0.72 -8.65 5.28 -60.29 -0.32 -8.97 16 16 C 0.54 7.06 7.20 -10.99 -0.08 6.98 16 17 O -0.54 -9.22 16.51 5.56 0.09 -9.12 16 18 C -0.10 -1.01 1.27 -150.41 -0.19 -1.20 16 19 C -0.11 -0.86 5.88 -24.34 -0.14 -1.00 16 20 C -0.12 -0.79 6.23 -24.34 -0.15 -0.94 16 21 C -0.11 -0.74 5.14 -85.36 -0.44 -1.18 16 22 C -0.12 -0.79 6.33 -23.11 -0.15 -0.94 16 23 C -0.11 -0.87 5.98 -23.11 -0.14 -1.01 16 24 C -0.09 -0.88 5.63 -22.47 -0.13 -1.01 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 27 H 0.04 0.51 7.18 -51.93 -0.37 0.13 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 3.97 7.65 -40.82 -0.31 3.66 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 37 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 42 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -32.13 354.68 -9.11 -41.24 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.02 Total: 6.65 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.60 Total: -6.44 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.09 Total: -55.16 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.13 -9.11 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568180867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.570 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds