Wall clock time and date at job start Fri Apr 10 2020 17:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47358 * 2 1 4 4 C 1.52997 * 109.47553 * 239.99753 * 2 1 3 5 5 N 1.46503 * 109.47444 * 185.00001 * 4 2 1 6 6 C 1.36929 * 120.00068 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00622 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00170 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99954 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00361 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47063 * 60.00211 * 10 8 6 12 12 H 1.48503 * 109.47374 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47291 * 299.99860 * 10 8 6 14 14 N 1.46501 * 109.47155 * 119.99573 * 2 1 3 15 15 C 1.46499 * 119.99831 * 60.00253 * 14 2 1 16 16 C 1.34779 * 120.00143 * 240.00365 * 14 2 1 17 17 O 1.21279 * 119.99955 * 0.02562 * 16 14 2 18 18 C 1.50703 * 119.99869 * 179.97438 * 16 14 2 19 19 C 1.52997 * 109.46926 * 179.97438 * 18 16 14 20 20 H 1.09006 * 109.36003 * 304.72360 * 19 18 16 21 21 C 1.50070 * 109.36000 * 64.31041 * 19 18 16 22 22 C 1.29172 * 123.99416 * 137.29428 * 21 19 18 23 23 C 1.50070 * 124.28199 * 359.61667 * 22 21 19 24 24 C 1.53024 * 110.03521 * 17.04512 * 23 22 21 25 25 C 1.53019 * 109.35812 * 185.00193 * 19 18 16 26 26 H 1.09003 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47656 * 300.00133 * 1 2 3 28 28 H 1.09004 * 109.47319 * 60.00588 * 1 2 3 29 29 H 1.09005 * 109.47215 * 305.00046 * 4 2 1 30 30 H 1.08998 * 109.47355 * 65.00104 * 4 2 1 31 31 H 0.96997 * 119.99772 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00320 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47040 * 269.99576 * 15 14 2 34 34 H 1.09001 * 109.47401 * 30.00085 * 15 14 2 35 35 H 1.09006 * 109.47155 * 150.00302 * 15 14 2 36 36 H 1.09000 * 109.46688 * 60.00154 * 18 16 14 37 37 H 1.08998 * 109.47428 * 300.00071 * 18 16 14 38 38 H 1.07999 * 117.96134 * 317.36038 * 21 19 18 39 39 H 1.08001 * 117.75277 * 179.61802 * 22 21 19 40 40 H 1.09002 * 109.35777 * 256.90530 * 23 22 21 41 41 H 1.08998 * 109.35386 * 137.18228 * 23 22 21 42 42 H 1.08995 * 109.64445 * 70.32309 * 24 23 22 43 43 H 1.08999 * 109.63818 * 190.73904 * 24 23 22 44 44 H 1.08997 * 109.64626 * 70.67357 * 25 19 18 45 45 H 1.09001 * 109.81915 * 310.14490 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1838 -1.4388 -2.2065 7 1 3.6469 -1.8441 -3.0514 8 6 5.5673 -1.5380 -2.1512 9 7 6.2219 -1.0428 -1.1222 10 14 6.5002 -2.3729 -3.5376 11 1 6.2428 -1.6534 -4.8109 12 1 7.9549 -2.3488 -3.2402 13 1 6.0445 -3.7806 -3.6635 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.7931 -0.0355 2.0834 17 8 3.0856 1.1258 1.8917 18 6 3.2949 -0.7457 3.3142 19 6 4.1455 0.2158 4.1466 20 1 4.9446 0.6213 3.5259 21 6 3.2843 1.3409 4.6414 22 6 3.3378 1.8177 5.8407 23 6 4.2599 1.3118 6.9112 24 6 5.3827 0.4810 6.2863 25 6 4.7555 -0.5402 5.3289 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6054 -1.7199 -1.2951 30 1 1.7517 -0.1584 -2.1369 31 1 3.9823 -0.4628 -0.4315 32 1 7.1886 -1.1124 -1.0833 33 1 0.7375 -2.1443 1.9995 34 1 1.5295 -2.5969 0.4709 35 1 2.4628 -2.5818 1.9866 36 1 3.9003 -1.6023 3.0179 37 1 2.4469 -1.0879 3.9074 38 1 2.5762 1.7773 3.9526 39 1 2.6748 2.6338 6.0874 40 1 3.6973 0.6919 7.6093 41 1 4.6912 2.1580 7.4460 42 1 6.0581 1.1343 5.7340 43 1 5.9344 -0.0378 7.0702 44 1 5.5235 -1.2249 4.9690 45 1 3.9791 -1.1013 5.8490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568281879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:46 Heat of formation + Delta-G solvation = -23.307010 kcal Electronic energy + Delta-G solvation = -22897.701340 eV Core-core repulsion = 19722.168035 eV Total energy + Delta-G solvation = -3175.533304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93092 -38.28512 -36.22952 -33.95334 -32.72592 -31.58013 -30.91966 -30.03231 -27.12481 -26.50511 -25.56417 -22.88390 -22.34084 -22.05462 -20.46212 -18.54078 -17.81176 -17.03581 -16.85045 -15.87274 -15.68078 -15.25556 -14.65344 -14.22474 -13.87610 -13.65484 -13.56733 -13.15867 -12.82990 -12.66982 -12.54549 -12.37131 -12.26133 -12.18932 -12.03762 -11.88815 -11.72358 -11.41911 -11.26600 -10.82012 -10.77235 -10.73768 -10.48524 -10.35848 -10.05230 -9.99676 -9.66700 -9.19038 -8.83989 -8.83067 -8.16209 -6.87012 -5.70828 -3.00059 2.50243 3.13136 3.42941 3.45643 3.49911 3.51149 4.61397 4.71889 4.81552 4.85074 5.02035 5.24718 5.28139 5.39096 5.42183 5.47566 5.51898 5.54835 5.59508 5.63350 5.65590 5.71988 5.76392 5.79291 5.90240 5.92303 5.99338 6.02661 6.11866 6.15669 6.17999 6.23448 6.41543 6.43556 6.49357 6.55460 6.77175 6.87989 7.05888 7.15374 7.71699 7.85447 8.46946 8.68125 9.58291 10.17597 10.53302 11.51284 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.004878 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.768262 B = 5738.632447 C = 6948.613288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.241 4.241 7 H 0.068 0.932 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.599 5.599 15 C 0.083 3.917 16 C 0.518 3.482 17 O -0.539 6.539 18 C -0.129 4.129 19 C -0.046 4.046 20 H 0.093 0.907 21 C -0.123 4.123 22 C -0.180 4.180 23 C -0.086 4.086 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.020 0.980 30 H 0.026 0.974 31 H 0.387 0.613 32 H 0.255 0.745 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 -0.215 14.619 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.373 4.373 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.332 5.332 15 C -0.061 4.061 16 C 0.306 3.694 17 O -0.416 6.416 18 C -0.169 4.169 19 C -0.064 4.064 20 H 0.111 0.889 21 C -0.141 4.141 22 C -0.198 4.198 23 C -0.123 4.123 24 C -0.158 4.158 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.221 0.779 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.222 0.320 14.361 17.070 hybrid contribution 0.643 -0.449 -0.713 1.060 sum -8.579 -0.128 13.648 16.121 Atomic orbital electron populations 1.22041 0.95356 1.01933 1.01877 1.21351 0.93111 0.98558 0.84852 0.88294 1.20995 0.87122 0.96670 0.93714 1.42292 0.99688 1.70083 1.25134 1.19168 0.89451 1.29472 0.99183 0.91394 1.24737 0.96411 1.01670 0.98024 1.69679 1.07172 1.50677 1.30253 0.86294 0.79045 0.79204 0.81769 1.21319 1.21714 1.21367 1.47698 1.50909 1.12123 1.22491 1.21678 0.99676 0.82182 1.02533 1.20546 0.77571 0.87000 0.84240 1.90668 1.57103 1.17193 1.76632 1.21684 1.00832 0.99772 0.94587 1.19862 0.97318 0.93540 0.95705 0.88945 1.22175 0.99047 0.96919 0.95989 1.21880 1.01174 1.01342 0.95418 1.20400 0.95945 0.99147 0.96829 1.21593 0.97581 0.97952 0.98667 1.21646 1.00064 0.97618 0.95881 0.92494 0.92785 0.91570 0.96282 0.95583 0.77899 0.93532 0.93517 0.90534 0.91289 0.88440 0.89516 0.87170 0.88579 0.91492 0.91672 0.91618 0.91918 0.91415 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.19 37.15 0.34 -1.68 16 2 C 0.12 2.18 2.80 -67.94 -0.19 1.99 16 3 H 0.10 1.98 6.90 -51.93 -0.36 1.63 16 4 C 0.14 2.94 5.50 -4.04 -0.02 2.92 16 5 N -0.73 -19.02 5.43 -59.91 -0.33 -19.35 16 6 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 9 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 10 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 N -0.60 -9.98 2.24 -173.93 -0.39 -10.37 16 15 C 0.08 1.11 9.30 59.85 0.56 1.67 16 16 C 0.52 9.24 7.01 -10.98 -0.08 9.16 16 17 O -0.54 -11.48 13.57 5.56 0.08 -11.40 16 18 C -0.13 -1.82 3.70 -27.88 -0.10 -1.92 16 19 C -0.05 -0.65 2.12 -92.07 -0.19 -0.85 16 20 H 0.09 1.59 7.96 -51.93 -0.41 1.17 16 21 C -0.12 -1.76 8.40 -35.83 -0.30 -2.06 16 22 C -0.18 -2.21 9.78 -35.83 -0.35 -2.56 16 23 C -0.09 -0.89 6.13 -28.18 -0.17 -1.06 16 24 C -0.12 -1.29 6.01 -26.51 -0.16 -1.45 16 25 C -0.11 -1.32 5.30 -26.52 -0.14 -1.46 16 26 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.02 0.38 6.88 -51.93 -0.36 0.03 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.39 10.95 7.06 -40.82 -0.29 10.66 16 32 H 0.25 7.65 8.31 -40.82 -0.34 7.32 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 1.09 6.53 -51.93 -0.34 0.75 16 35 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 36 H 0.10 1.36 7.40 -51.93 -0.38 0.98 16 37 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.11 1.77 6.47 -52.49 -0.34 1.43 16 39 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -32.99 352.88 -8.51 -41.50 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.83 Total: 9.49 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.06 Total: -4.80 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.01 Total: -57.80 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.99 -8.51 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568281879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.192 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds