Wall clock time and date at job start Fri Apr 10 2020 17:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47248 * 2 1 4 4 C 1.53003 * 109.47300 * 119.99418 * 2 1 3 5 5 N 1.46492 * 109.47561 * 175.00118 * 4 2 1 6 6 C 1.46502 * 120.00246 * 270.00163 * 5 4 2 7 7 C 1.34775 * 120.00188 * 90.00130 * 5 4 2 8 8 O 1.21283 * 120.00000 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00245 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47295 * 180.02562 * 9 7 5 11 11 H 1.09004 * 109.35948 * 55.26854 * 10 9 7 12 12 C 1.50065 * 109.48230 * 295.83059 * 10 9 7 13 13 C 1.29443 * 124.07980 * 223.00478 * 12 10 9 14 14 C 1.50070 * 124.07366 * 359.94620 * 13 12 10 15 15 C 1.53027 * 110.14693 * 343.13269 * 14 13 12 16 16 C 1.53022 * 109.35935 * 175.00086 * 10 9 7 17 17 N 1.46501 * 109.47402 * 239.99633 * 2 1 3 18 18 C 1.36934 * 119.99952 * 84.99822 * 17 2 1 19 19 H 1.07994 * 119.99903 * 0.02562 * 18 17 2 20 20 C 1.38814 * 119.99827 * 180.02562 * 18 17 2 21 21 N 1.31612 * 120.00054 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99767 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47209 * 60.00056 * 22 20 18 24 24 H 1.48494 * 109.46971 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47138 * 300.00061 * 22 20 18 26 26 H 1.09002 * 109.47370 * 300.00304 * 1 2 3 27 27 H 1.09001 * 109.46844 * 60.00445 * 1 2 3 28 28 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46785 * 54.99865 * 4 2 1 30 30 H 1.09001 * 109.47075 * 295.00746 * 4 2 1 31 31 H 1.08993 * 109.47530 * 270.00280 * 6 5 4 32 32 H 1.09006 * 109.46973 * 30.00130 * 6 5 4 33 33 H 1.09004 * 109.47442 * 149.99653 * 6 5 4 34 34 H 1.08997 * 109.47465 * 59.99576 * 9 7 5 35 35 H 1.09007 * 109.46629 * 299.99702 * 9 7 5 36 36 H 1.08004 * 117.96441 * 42.76070 * 12 10 9 37 37 H 1.08002 * 117.96781 * 180.23731 * 13 12 10 38 38 H 1.09000 * 109.35664 * 103.33988 * 14 13 12 39 39 H 1.08997 * 109.35897 * 223.06676 * 14 13 12 40 40 H 1.08997 * 109.64512 * 169.11725 * 15 14 13 41 41 H 1.09001 * 109.64307 * 289.75441 * 15 14 13 42 42 H 1.08993 * 109.64759 * 49.95222 * 16 10 9 43 43 H 1.09000 * 109.81311 * 289.42586 * 16 10 9 44 44 H 0.96997 * 119.99762 * 264.99824 * 17 2 1 45 45 H 0.97005 * 120.00082 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5615 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1141 2.2371 9 6 5.7694 0.0415 1.6549 10 6 6.3962 1.2700 2.3173 11 1 6.0110 1.3693 3.3322 12 6 6.0371 2.4987 1.5343 13 6 6.8705 3.4478 1.2514 14 6 8.3122 3.4526 1.6678 15 6 8.5405 2.4359 2.7885 16 6 7.9162 1.1000 2.3659 17 7 2.0183 -0.6907 -1.1961 18 6 2.1491 -0.0076 -2.3757 19 1 1.8926 1.0403 -2.4242 20 6 2.6114 -0.6622 -3.5092 21 7 2.9235 -1.9394 -3.4502 22 14 2.7905 0.2698 -5.1182 23 1 3.7465 1.3915 -4.9367 24 1 3.2982 -0.6490 -6.1685 25 1 1.4685 0.8075 -5.5285 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7197 1.2953 30 1 1.7515 -0.1582 2.1370 31 1 4.2822 -2.7687 1.3099 32 1 3.4757 -2.3722 -0.2265 33 1 5.0852 -1.7020 0.1327 34 1 6.0880 -0.0128 0.6140 35 1 6.0906 -0.8579 2.1806 36 1 5.0208 2.5954 1.1816 37 1 6.5045 4.2909 0.6841 38 1 8.9363 3.1938 0.8125 39 1 8.5820 4.4467 2.0243 40 1 9.6101 2.3049 2.9521 41 1 8.0669 2.7881 3.7049 42 1 8.2852 0.8187 1.3797 43 1 8.1786 0.3279 3.0892 44 1 2.2491 -1.6318 -1.1524 45 1 3.2469 -2.3968 -4.2422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571393669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:19 Heat of formation + Delta-G solvation = -23.356401 kcal Electronic energy + Delta-G solvation = -22926.558249 eV Core-core repulsion = 19751.022803 eV Total energy + Delta-G solvation = -3175.535446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87646 -38.21669 -36.22662 -34.15703 -32.65206 -31.89826 -30.90531 -28.90109 -27.63912 -26.62238 -25.03388 -23.56378 -22.31033 -21.92045 -20.09739 -18.62388 -17.84282 -17.26908 -16.63586 -15.86083 -15.70322 -15.26255 -14.62900 -14.19117 -13.93994 -13.86273 -13.56172 -13.09687 -12.75974 -12.64121 -12.37747 -12.31201 -12.17288 -12.02651 -11.95938 -11.73677 -11.42298 -11.33034 -11.20555 -10.84194 -10.81001 -10.68648 -10.48622 -10.34542 -10.08863 -10.00870 -9.62961 -9.25286 -8.91151 -8.79408 -8.08126 -6.94093 -5.77845 -3.04187 2.53872 3.07146 3.43591 3.48136 3.49085 3.51253 4.59939 4.68621 4.75998 4.80655 5.01322 5.22714 5.32094 5.42338 5.51836 5.53880 5.56717 5.58781 5.62519 5.67113 5.73835 5.79384 5.83909 5.89847 5.90957 5.92472 5.93918 6.10475 6.16512 6.29660 6.34724 6.37456 6.39066 6.45035 6.72635 6.85455 6.90075 6.93507 7.17220 7.21097 7.71263 7.86828 8.42365 8.63504 9.53239 10.09642 10.45552 11.45222 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.005139 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.848118 B = 5447.368323 C = 6353.131638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.050 0.950 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.081 3.919 7 C 0.515 3.485 8 O -0.550 6.550 9 C -0.132 4.132 10 C -0.041 4.041 11 H 0.084 0.916 12 C -0.127 4.127 13 C -0.178 4.178 14 C -0.088 4.088 15 C -0.119 4.119 16 C -0.116 4.116 17 N -0.720 5.720 18 C -0.230 4.230 19 H 0.067 0.933 20 C -0.013 4.013 21 N -0.937 5.937 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.381 0.619 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.758 2.540 12.861 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.069 0.931 4 C -0.013 4.013 5 N -0.328 5.328 6 C -0.062 4.062 7 C 0.303 3.697 8 O -0.429 6.429 9 C -0.172 4.172 10 C -0.060 4.060 11 H 0.102 0.898 12 C -0.145 4.145 13 C -0.196 4.196 14 C -0.125 4.125 15 C -0.156 4.156 16 C -0.154 4.154 17 N -0.363 5.363 18 C -0.361 4.361 19 H 0.085 0.915 20 C -0.209 4.209 21 N -0.586 5.586 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.216 0.784 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.494 3.141 12.980 15.827 hybrid contribution 0.002 0.097 -1.267 1.271 sum 8.496 3.238 11.713 14.828 Atomic orbital electron populations 1.22371 0.98911 1.00784 1.00219 1.20654 0.91882 0.96276 0.86789 0.93148 1.21805 0.79234 1.00962 0.99318 1.47635 1.06611 1.21500 1.57004 1.21879 0.99836 0.86985 0.97530 1.20532 0.89384 0.82092 0.77687 1.90635 1.75303 1.31135 1.45851 1.21713 0.92502 0.99490 1.03482 1.19815 0.94305 0.92317 0.99533 0.89756 1.22236 1.00009 0.94534 0.97732 1.21971 0.95273 0.99640 1.02694 1.20414 0.94722 0.99120 0.98216 1.21585 1.00124 0.95399 0.98502 1.21672 0.94617 0.97284 1.01815 1.42462 1.78174 1.10395 1.05259 1.19187 1.35877 0.93761 0.87315 0.91518 1.24644 1.02456 0.95959 0.97811 1.69612 1.51527 1.08537 1.28920 0.86317 0.77778 0.78637 0.83788 1.21433 1.21740 1.21396 0.94344 0.92632 0.93510 0.91189 0.90290 0.93763 0.89131 0.91286 0.88590 0.89195 0.86842 0.88305 0.91305 0.91666 0.91936 0.91845 0.91532 0.91751 0.78375 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.49 37.15 0.35 -2.64 16 2 C 0.15 3.17 3.20 -67.93 -0.22 2.95 16 3 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 4 C 0.11 1.91 5.05 -4.04 -0.02 1.89 16 5 N -0.60 -10.11 2.73 -181.57 -0.50 -10.61 16 6 C 0.08 1.25 9.86 59.85 0.59 1.84 16 7 C 0.51 8.80 7.31 -10.99 -0.08 8.72 16 8 O -0.55 -10.84 13.81 5.55 0.08 -10.76 16 9 C -0.13 -1.79 3.70 -27.88 -0.10 -1.89 16 10 C -0.04 -0.54 2.11 -92.07 -0.19 -0.73 16 11 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 12 C -0.13 -1.91 8.41 -35.90 -0.30 -2.21 16 13 C -0.18 -2.38 9.80 -35.90 -0.35 -2.73 16 14 C -0.09 -0.94 6.12 -28.17 -0.17 -1.11 16 15 C -0.12 -1.17 6.01 -26.51 -0.16 -1.33 16 16 C -0.12 -1.22 5.31 -26.51 -0.14 -1.36 16 17 N -0.72 -17.40 4.57 -53.43 -0.24 -17.64 16 18 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.94 -27.06 13.06 55.49 0.72 -26.34 16 22 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 30 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.65 5.63 -51.93 -0.29 1.36 16 33 H 0.07 1.03 6.44 -51.93 -0.33 0.69 16 34 H 0.10 1.35 7.40 -51.93 -0.38 0.97 16 35 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.11 2.04 6.47 -52.48 -0.34 1.70 16 37 H 0.10 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 42 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.38 9.41 5.33 -40.82 -0.22 9.19 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -30.51 353.29 -8.50 -39.01 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.82 Total: 9.19 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.04 Total: -5.53 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.01 Total: -54.59 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.51 -8.50 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571393669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.657 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds