Wall clock time and date at job start Fri Apr 10 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47248 * 2 1 4 4 C 1.53003 * 109.47300 * 119.99418 * 2 1 3 5 5 N 1.46492 * 109.47561 * 175.00118 * 4 2 1 6 6 C 1.46502 * 120.00246 * 270.00163 * 5 4 2 7 7 C 1.34775 * 120.00188 * 90.00130 * 5 4 2 8 8 O 1.21283 * 120.00000 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00245 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47295 * 180.02562 * 9 7 5 11 11 H 1.09004 * 109.35948 * 55.26854 * 10 9 7 12 12 C 1.50065 * 109.48230 * 295.83059 * 10 9 7 13 13 C 1.29443 * 124.07980 * 223.00478 * 12 10 9 14 14 C 1.50070 * 124.07366 * 359.94620 * 13 12 10 15 15 C 1.53027 * 110.14693 * 343.13269 * 14 13 12 16 16 C 1.53022 * 109.35935 * 175.00086 * 10 9 7 17 17 N 1.46501 * 109.47402 * 239.99633 * 2 1 3 18 18 C 1.36934 * 119.99952 * 84.99822 * 17 2 1 19 19 H 1.07994 * 119.99903 * 0.02562 * 18 17 2 20 20 C 1.38814 * 119.99827 * 180.02562 * 18 17 2 21 21 N 1.31612 * 120.00054 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99767 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47209 * 60.00056 * 22 20 18 24 24 H 1.48494 * 109.46971 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47138 * 300.00061 * 22 20 18 26 26 H 1.09002 * 109.47370 * 300.00304 * 1 2 3 27 27 H 1.09001 * 109.46844 * 60.00445 * 1 2 3 28 28 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46785 * 54.99865 * 4 2 1 30 30 H 1.09001 * 109.47075 * 295.00746 * 4 2 1 31 31 H 1.08993 * 109.47530 * 270.00280 * 6 5 4 32 32 H 1.09006 * 109.46973 * 30.00130 * 6 5 4 33 33 H 1.09004 * 109.47442 * 149.99653 * 6 5 4 34 34 H 1.08997 * 109.47465 * 59.99576 * 9 7 5 35 35 H 1.09007 * 109.46629 * 299.99702 * 9 7 5 36 36 H 1.08004 * 117.96441 * 42.76070 * 12 10 9 37 37 H 1.08002 * 117.96781 * 180.23731 * 13 12 10 38 38 H 1.09000 * 109.35664 * 103.33988 * 14 13 12 39 39 H 1.08997 * 109.35897 * 223.06676 * 14 13 12 40 40 H 1.08997 * 109.64512 * 169.11725 * 15 14 13 41 41 H 1.09001 * 109.64307 * 289.75441 * 15 14 13 42 42 H 1.08993 * 109.64759 * 49.95222 * 16 10 9 43 43 H 1.09000 * 109.81311 * 289.42586 * 16 10 9 44 44 H 0.96997 * 119.99762 * 264.99824 * 17 2 1 45 45 H 0.97005 * 120.00082 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5615 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1141 2.2371 9 6 5.7694 0.0415 1.6549 10 6 6.3962 1.2700 2.3173 11 1 6.0110 1.3693 3.3322 12 6 6.0371 2.4987 1.5343 13 6 6.8705 3.4478 1.2514 14 6 8.3122 3.4526 1.6678 15 6 8.5405 2.4359 2.7885 16 6 7.9162 1.1000 2.3659 17 7 2.0183 -0.6907 -1.1961 18 6 2.1491 -0.0076 -2.3757 19 1 1.8926 1.0403 -2.4242 20 6 2.6114 -0.6622 -3.5092 21 7 2.9235 -1.9394 -3.4502 22 14 2.7905 0.2698 -5.1182 23 1 3.7465 1.3915 -4.9367 24 1 3.2982 -0.6490 -6.1685 25 1 1.4685 0.8075 -5.5285 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7197 1.2953 30 1 1.7515 -0.1582 2.1370 31 1 4.2822 -2.7687 1.3099 32 1 3.4757 -2.3722 -0.2265 33 1 5.0852 -1.7020 0.1327 34 1 6.0880 -0.0128 0.6140 35 1 6.0906 -0.8579 2.1806 36 1 5.0208 2.5954 1.1816 37 1 6.5045 4.2909 0.6841 38 1 8.9363 3.1938 0.8125 39 1 8.5820 4.4467 2.0243 40 1 9.6101 2.3049 2.9521 41 1 8.0669 2.7881 3.7049 42 1 8.2852 0.8187 1.3797 43 1 8.1786 0.3279 3.0892 44 1 2.2491 -1.6318 -1.1524 45 1 3.2469 -2.3968 -4.2422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571393669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:18 Heat of formation + Delta-G solvation = -40.179506 kcal Electronic energy + Delta-G solvation = -22927.287754 eV Core-core repulsion = 19751.022803 eV Total energy + Delta-G solvation = -3176.264951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15825 -39.29734 -37.80819 -35.76170 -34.11865 -33.40193 -31.86194 -30.75108 -28.85534 -27.91376 -26.46499 -25.45613 -23.25550 -22.96286 -21.71001 -19.98846 -19.28106 -18.83549 -17.94298 -17.12276 -16.89831 -16.72790 -16.38813 -15.60554 -15.39887 -15.12677 -14.89627 -14.51536 -13.88040 -13.85421 -13.67129 -13.65361 -13.48444 -13.27692 -13.16250 -13.07120 -12.95550 -12.80348 -12.65694 -12.55104 -12.32215 -12.22635 -11.87466 -11.69188 -11.61187 -11.37884 -11.04465 -10.96960 -10.55022 -9.86915 -9.50001 -8.94700 -7.93218 -5.18423 1.42131 1.45094 1.45638 1.51973 1.73576 2.22075 2.55584 3.40139 3.60985 3.80771 3.84889 3.89579 4.03439 4.11567 4.28321 4.30362 4.41900 4.43953 4.51245 4.54300 4.62906 4.70133 4.70959 4.74362 4.79459 4.85277 4.90551 4.91891 4.98421 5.08271 5.11163 5.19783 5.24067 5.24814 5.39047 5.43983 5.50923 5.51771 5.71271 5.81310 6.11001 6.29905 6.54689 7.29864 7.37547 8.10365 8.39633 9.29131 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.005139 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.848118 B = 5447.368323 C = 6353.131638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.017 0.983 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.084 3.916 7 C 0.505 3.495 8 O -0.583 6.583 9 C -0.125 4.125 10 C -0.036 4.036 11 H 0.075 0.925 12 C -0.153 4.153 13 C -0.170 4.170 14 C -0.088 4.088 15 C -0.117 4.117 16 C -0.111 4.111 17 N -0.723 5.723 18 C -0.236 4.236 19 H 0.057 0.943 20 C -0.061 4.061 21 N -0.958 5.958 22 Si 0.959 3.041 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.284 1.284 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.379 0.621 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.371 2.001 13.874 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.036 0.964 4 C -0.007 4.007 5 N -0.332 5.332 6 C -0.058 4.058 7 C 0.295 3.705 8 O -0.464 6.464 9 C -0.164 4.164 10 C -0.055 4.055 11 H 0.093 0.907 12 C -0.171 4.171 13 C -0.188 4.188 14 C -0.125 4.125 15 C -0.155 4.155 16 C -0.149 4.149 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.075 0.925 20 C -0.254 4.254 21 N -0.609 5.609 22 Si 0.789 3.211 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.214 0.786 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.099 2.605 14.010 17.466 hybrid contribution -0.550 0.352 -1.562 1.693 sum 9.549 2.957 12.448 15.965 Atomic orbital electron populations 1.22216 0.96985 1.01484 1.00585 1.20766 0.93202 0.94616 0.87089 0.96445 1.21698 0.79932 1.01637 0.97460 1.47790 1.06503 1.22060 1.56885 1.21910 0.98953 0.87196 0.97784 1.21231 0.90957 0.81377 0.76965 1.90616 1.76200 1.32256 1.47336 1.21747 0.89702 1.01300 1.03652 1.19795 0.96401 0.90950 0.98307 0.90705 1.22146 0.98427 0.96717 0.99812 1.22239 0.96907 0.98492 1.01153 1.20493 0.92335 1.00560 0.99093 1.21611 1.01572 0.94502 0.97773 1.21671 0.92086 0.98493 1.02625 1.42512 1.78431 1.10260 1.05441 1.19370 1.35220 0.93545 0.88716 0.92543 1.25253 1.02987 0.96824 1.00363 1.69727 1.52426 1.09426 1.29285 0.85442 0.77609 0.77492 0.80576 1.21387 1.21593 1.21060 0.91552 0.94677 0.92558 0.89094 0.89820 0.89958 0.91989 0.91017 0.89157 0.85852 0.91028 0.88929 0.90304 0.90128 0.89441 0.92121 0.91455 0.89469 0.78601 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 9.49 71.98 0.68 -4.89 16 2 C 0.15 6.37 3.20 44.99 0.14 6.51 16 3 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 4 C 0.12 3.98 5.05 86.38 0.44 4.42 16 5 N -0.60 -20.15 2.73 -846.75 -2.31 -22.46 16 6 C 0.08 2.50 9.86 127.77 1.26 3.76 16 7 C 0.50 17.33 7.31 87.66 0.64 17.97 16 8 O -0.58 -23.69 13.81 -3.04 -0.04 -23.73 16 9 C -0.12 -3.25 3.70 29.85 0.11 -3.14 16 10 C -0.04 -0.91 2.11 -11.73 -0.02 -0.94 16 11 H 0.07 2.03 7.96 -2.39 -0.02 2.01 16 12 C -0.15 -4.74 8.41 27.04 0.23 -4.51 16 13 C -0.17 -4.54 9.80 27.04 0.27 -4.27 16 14 C -0.09 -1.70 6.12 29.66 0.18 -1.52 16 15 C -0.12 -1.97 6.01 30.74 0.18 -1.78 16 16 C -0.11 -2.04 5.31 30.73 0.16 -1.88 16 17 N -0.72 -35.55 4.57 -322.94 -1.47 -37.03 16 18 C -0.24 -13.21 9.93 84.03 0.83 -12.37 16 19 H 0.06 3.21 7.83 -2.91 -0.02 3.18 16 20 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 21 N -0.96 -55.69 13.06 21.65 0.28 -55.41 16 22 Si 0.96 46.34 29.55 68.60 2.03 48.37 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 25 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 2.73 8.07 -2.38 -0.02 2.71 16 30 H 0.08 2.79 7.42 -2.39 -0.02 2.78 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 2.23 5.63 -2.38 -0.01 2.22 16 33 H 0.07 2.06 6.44 -2.38 -0.02 2.05 16 34 H 0.09 2.49 7.40 -2.39 -0.02 2.47 16 35 H 0.12 2.36 8.11 -2.38 -0.02 2.34 16 36 H 0.07 2.79 6.47 -2.91 -0.02 2.77 16 37 H 0.09 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 42 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.38 18.94 5.33 -92.71 -0.49 18.45 16 45 H 0.25 14.29 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -67.24 353.29 4.51 -62.72 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.46 Total: 33.15 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.57 Total: -5.62 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -3.50 Total: -114.89 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.04 Total: -23.73 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -67.24 4.51 -62.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571393669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.545 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds