Wall clock time and date at job start Fri Apr 10 2020 17:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 O 1.21277 * 119.99833 * 119.99582 * 4 2 1 6 6 N 1.34773 * 120.00068 * 299.99925 * 4 2 1 7 7 C 1.46500 * 119.99996 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47317 * 179.97438 * 7 6 4 9 9 H 1.09004 * 112.84929 * 316.19946 * 8 7 6 10 10 C 1.53785 * 113.61333 * 87.49907 * 8 7 6 11 11 C 1.53788 * 87.07727 * 139.98427 * 10 8 7 12 12 H 1.08992 * 113.68933 * 220.00854 * 11 10 8 13 13 N 1.46503 * 113.61074 * 89.11777 * 11 10 8 14 14 C 1.36932 * 119.99775 * 107.50601 * 13 11 10 15 15 H 1.08004 * 120.00526 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99961 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00082 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99880 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47216 * 60.00053 * 18 16 14 20 20 H 1.48511 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47304 * 299.99511 * 18 16 14 22 22 C 1.53780 * 87.08316 * 334.56865 * 11 10 8 23 23 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 24 24 C 1.53778 * 113.61684 * 159.13669 * 23 2 1 25 25 C 1.53955 * 87.02316 * 220.04819 * 24 23 2 26 26 C 1.53778 * 87.10843 * 25.36329 * 25 24 23 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99906 * 359.97438 * 6 4 2 31 31 H 1.09002 * 109.47092 * 299.99922 * 7 6 4 32 32 H 1.09004 * 109.47042 * 59.99923 * 7 6 4 33 33 H 1.08997 * 113.61231 * 254.53332 * 10 8 7 34 34 H 1.09000 * 113.61001 * 25.44279 * 10 8 7 35 35 H 0.97000 * 120.00130 * 287.49587 * 13 11 10 36 36 H 0.97001 * 120.00295 * 180.02562 * 17 16 14 37 37 H 1.08996 * 113.61582 * 270.88846 * 22 11 10 38 38 H 1.08999 * 113.68981 * 139.98656 * 22 11 10 39 39 H 1.09000 * 112.85017 * 290.33959 * 23 2 1 40 40 H 1.08994 * 113.61342 * 334.57274 * 24 23 2 41 41 H 1.09003 * 113.61189 * 105.46899 * 24 23 2 42 42 H 1.09001 * 113.53585 * 270.81578 * 25 24 23 43 43 H 1.08998 * 113.66622 * 139.93132 * 25 24 23 44 44 H 1.09007 * 113.61773 * 220.09189 * 26 25 24 45 45 H 1.08996 * 113.61772 * 89.18628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1946 -0.9409 3.6507 8 6 1.6853 -0.2192 4.9000 9 1 1.7710 0.8650 4.8270 10 6 0.3012 -0.6995 5.3676 11 6 0.8367 -0.5918 6.8052 12 1 0.5150 -1.4061 7.4544 13 7 0.6382 0.7287 7.4079 14 6 -0.3023 0.8994 8.3884 15 1 -0.8981 0.0607 8.7172 16 6 -0.4899 2.1504 8.9599 17 7 0.2365 3.1724 8.5597 18 14 -1.7734 2.3834 10.2969 19 1 -1.4507 1.5065 11.4512 20 1 -1.7763 3.8013 10.7387 21 1 -3.1132 2.0277 9.7644 22 6 2.2415 -0.7940 6.2134 23 6 2.0400 -0.7213 -1.2492 24 6 3.4866 -0.3577 -1.6231 25 6 3.0233 -0.3620 -3.0912 26 6 1.6121 -0.0510 -2.5654 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.1494 0.5389 2.5435 31 1 1.8308 -1.9684 3.6505 32 1 3.2847 -0.9413 3.6508 33 1 -0.5022 0.0033 5.1471 34 1 0.0677 -1.7200 5.0640 35 1 1.1732 1.4820 7.1125 36 1 0.1056 4.0466 8.9592 37 1 2.5384 -1.8403 6.1409 38 1 3.0054 -0.1683 6.6749 39 1 1.8519 -1.7946 -1.2246 40 1 3.7963 0.6244 -1.2658 41 1 4.2079 -1.1409 -1.3896 42 1 3.1054 -1.3375 -3.5707 43 1 3.4538 0.4419 -3.6883 44 1 0.8220 -0.5869 -3.0916 45 1 1.4082 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656207454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:42 Heat of formation + Delta-G solvation = -5.556621 kcal Electronic energy + Delta-G solvation = -21750.359834 eV Core-core repulsion = 18575.596245 eV Total energy + Delta-G solvation = -3174.763590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33906 -38.90574 -38.08137 -34.61758 -33.42954 -32.82433 -30.13343 -27.38757 -26.35973 -25.44024 -25.06490 -23.90217 -22.99588 -21.60943 -20.16971 -19.56843 -18.37027 -17.45338 -16.96289 -16.19128 -15.51328 -15.44059 -14.93005 -14.74515 -14.33965 -14.11746 -13.60948 -13.46803 -13.00699 -12.89296 -12.71594 -12.70691 -12.35274 -12.24051 -11.92903 -11.81303 -11.45258 -11.34765 -11.05513 -10.84328 -10.73947 -10.53020 -10.48770 -10.33254 -10.22110 -10.04630 -9.70580 -9.65879 -9.40416 -8.95143 -8.88142 -7.02137 -5.82591 -3.11666 2.69464 3.24278 3.41023 3.45569 3.46419 4.32386 4.41650 4.44997 4.54080 4.64999 4.78220 4.96020 5.05525 5.06864 5.14654 5.19988 5.27353 5.43743 5.48073 5.49552 5.51257 5.59115 5.63244 5.67715 5.70497 5.75236 5.86058 5.87006 5.93913 5.99221 6.07428 6.11677 6.20883 6.31994 6.36474 6.46983 6.59591 6.73407 6.89926 7.03274 7.57713 7.66664 8.28327 8.36659 9.47216 10.04816 10.39100 11.39813 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032222 B = 0.002768 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.767697 B =10112.000270 C =10513.339435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.095 0.905 4 C 0.514 3.486 5 O -0.545 6.545 6 N -0.725 5.725 7 C 0.131 3.869 8 C -0.120 4.120 9 H 0.092 0.908 10 C -0.168 4.168 11 C 0.167 3.833 12 H 0.062 0.938 13 N -0.706 5.706 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.148 4.148 23 C -0.087 4.087 24 C -0.134 4.134 25 C -0.144 4.144 26 C -0.136 4.136 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.401 0.599 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -5.988 -20.661 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.113 0.887 4 C 0.300 3.700 5 O -0.422 6.422 6 N -0.376 5.376 7 C 0.008 3.992 8 C -0.138 4.138 9 H 0.110 0.890 10 C -0.209 4.209 11 C 0.055 3.945 12 H 0.080 0.920 13 N -0.344 5.344 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.188 4.188 23 C -0.106 4.106 24 C -0.171 4.171 25 C -0.181 4.181 26 C -0.174 4.174 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.236 0.764 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.550 -6.684 -20.552 21.901 hybrid contribution -0.772 0.903 0.689 1.373 sum 2.778 -5.780 -19.863 20.873 Atomic orbital electron populations 1.21751 0.92814 1.02804 1.02731 1.21370 0.97541 1.00488 0.93021 0.88668 1.20632 0.80053 0.84621 0.84651 1.90669 1.38095 1.26508 1.86937 1.46119 1.53560 1.32157 1.05778 1.21454 0.98666 0.96016 0.83097 1.22709 0.98462 1.00066 0.92591 0.88957 1.23881 0.95741 0.99832 1.01420 1.21057 0.92306 0.89795 0.91345 0.91991 1.42161 1.44080 1.04780 1.43399 1.19248 1.11953 0.94482 1.11706 0.91047 1.24763 0.99949 0.95813 1.00350 1.69649 1.42684 1.00289 1.45507 0.86243 0.81249 0.76766 0.81773 1.21187 1.21674 1.21214 1.23443 0.99592 1.00304 0.95445 1.22342 0.96261 1.00244 0.91751 1.22935 0.96768 1.01776 0.95624 1.22838 0.96859 1.01713 0.96699 1.22966 0.97068 1.00857 0.96489 0.91920 0.91391 0.92098 0.76441 0.91733 0.92007 0.91544 0.91447 0.78120 0.93379 0.90502 0.91360 0.88574 0.90470 0.91198 0.90329 0.91606 0.91511 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.91 37.16 0.33 -0.83 16 2 C -0.10 -0.97 2.45 -91.77 -0.23 -1.20 16 3 H 0.10 0.79 7.98 -51.93 -0.41 0.37 16 4 C 0.51 6.59 7.13 -10.99 -0.08 6.51 16 5 O -0.54 -8.91 15.82 5.56 0.09 -8.82 16 6 N -0.72 -8.83 5.45 -60.29 -0.33 -9.16 16 7 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 8 C -0.12 -1.78 3.63 -89.80 -0.33 -2.11 16 9 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 10 C -0.17 -2.77 7.43 -25.91 -0.19 -2.96 16 11 C 0.17 3.24 4.56 -67.11 -0.31 2.94 16 12 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 13 N -0.71 -17.26 5.31 -52.64 -0.28 -17.54 16 14 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 18 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.15 -2.37 7.39 -25.92 -0.19 -2.57 16 23 C -0.09 -0.82 2.51 -89.81 -0.23 -1.05 16 24 C -0.13 -1.25 7.54 -25.83 -0.19 -1.44 16 25 C -0.14 -1.09 8.09 -25.83 -0.21 -1.30 16 26 C -0.14 -1.00 6.75 -25.92 -0.17 -1.18 16 27 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 28 H 0.07 0.45 7.50 -51.93 -0.39 0.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.40 4.26 7.89 -40.82 -0.32 3.93 16 31 H 0.06 0.91 7.84 -51.93 -0.41 0.51 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 35 H 0.38 9.94 7.90 -40.82 -0.32 9.62 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.10 1.05 7.91 -51.93 -0.41 0.64 16 40 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -30.82 362.06 -9.52 -40.34 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.10 Total: 10.30 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.06 Total: -10.66 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.12 Total: -53.65 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.82 -9.52 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656207454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.788 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds