Wall clock time and date at job start Fri Apr 10 2020 17:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 O 1.21277 * 119.99833 * 119.99582 * 4 2 1 6 6 N 1.34773 * 120.00068 * 299.99925 * 4 2 1 7 7 C 1.46500 * 119.99996 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47317 * 179.97438 * 7 6 4 9 9 H 1.09004 * 112.84929 * 316.19946 * 8 7 6 10 10 C 1.53785 * 113.61333 * 87.49907 * 8 7 6 11 11 C 1.53788 * 87.07727 * 139.98427 * 10 8 7 12 12 H 1.08992 * 113.68933 * 220.00854 * 11 10 8 13 13 N 1.46503 * 113.61074 * 89.11777 * 11 10 8 14 14 C 1.36932 * 119.99775 * 107.50601 * 13 11 10 15 15 H 1.08004 * 120.00526 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99961 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00082 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99880 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47216 * 60.00053 * 18 16 14 20 20 H 1.48511 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47304 * 299.99511 * 18 16 14 22 22 C 1.53780 * 87.08316 * 334.56865 * 11 10 8 23 23 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 24 24 C 1.53778 * 113.61684 * 159.13669 * 23 2 1 25 25 C 1.53955 * 87.02316 * 220.04819 * 24 23 2 26 26 C 1.53778 * 87.10843 * 25.36329 * 25 24 23 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99906 * 359.97438 * 6 4 2 31 31 H 1.09002 * 109.47092 * 299.99922 * 7 6 4 32 32 H 1.09004 * 109.47042 * 59.99923 * 7 6 4 33 33 H 1.08997 * 113.61231 * 254.53332 * 10 8 7 34 34 H 1.09000 * 113.61001 * 25.44279 * 10 8 7 35 35 H 0.97000 * 120.00130 * 287.49587 * 13 11 10 36 36 H 0.97001 * 120.00295 * 180.02562 * 17 16 14 37 37 H 1.08996 * 113.61582 * 270.88846 * 22 11 10 38 38 H 1.08999 * 113.68981 * 139.98656 * 22 11 10 39 39 H 1.09000 * 112.85017 * 290.33959 * 23 2 1 40 40 H 1.08994 * 113.61342 * 334.57274 * 24 23 2 41 41 H 1.09003 * 113.61189 * 105.46899 * 24 23 2 42 42 H 1.09001 * 113.53585 * 270.81578 * 25 24 23 43 43 H 1.08998 * 113.66622 * 139.93132 * 25 24 23 44 44 H 1.09007 * 113.61773 * 220.09189 * 26 25 24 45 45 H 1.08996 * 113.61772 * 89.18628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1946 -0.9409 3.6507 8 6 1.6853 -0.2192 4.9000 9 1 1.7710 0.8650 4.8270 10 6 0.3012 -0.6995 5.3676 11 6 0.8367 -0.5918 6.8052 12 1 0.5150 -1.4061 7.4544 13 7 0.6382 0.7287 7.4079 14 6 -0.3023 0.8994 8.3884 15 1 -0.8981 0.0607 8.7172 16 6 -0.4899 2.1504 8.9599 17 7 0.2365 3.1724 8.5597 18 14 -1.7734 2.3834 10.2969 19 1 -1.4507 1.5065 11.4512 20 1 -1.7763 3.8013 10.7387 21 1 -3.1132 2.0277 9.7644 22 6 2.2415 -0.7940 6.2134 23 6 2.0400 -0.7213 -1.2492 24 6 3.4866 -0.3577 -1.6231 25 6 3.0233 -0.3620 -3.0912 26 6 1.6121 -0.0510 -2.5654 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.1494 0.5389 2.5435 31 1 1.8308 -1.9684 3.6505 32 1 3.2847 -0.9413 3.6508 33 1 -0.5022 0.0033 5.1471 34 1 0.0677 -1.7200 5.0640 35 1 1.1732 1.4820 7.1125 36 1 0.1056 4.0466 8.9592 37 1 2.5384 -1.8403 6.1409 38 1 3.0054 -0.1683 6.6749 39 1 1.8519 -1.7946 -1.2246 40 1 3.7963 0.6244 -1.2658 41 1 4.2079 -1.1409 -1.3896 42 1 3.1054 -1.3375 -3.5707 43 1 3.4538 0.4419 -3.6883 44 1 0.8220 -0.5869 -3.0916 45 1 1.4082 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656207454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:42 Heat of formation + Delta-G solvation = -24.103643 kcal Electronic energy + Delta-G solvation = -21751.164094 eV Core-core repulsion = 18575.596245 eV Total energy + Delta-G solvation = -3175.567849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28394 -40.13607 -39.06231 -35.97632 -35.00511 -33.78589 -31.99034 -28.69977 -27.04129 -26.44216 -26.09877 -25.73356 -24.06701 -22.87417 -21.14465 -20.27558 -19.77129 -19.32771 -18.05234 -17.23522 -16.70347 -16.44725 -16.26120 -15.79531 -15.67189 -15.50563 -14.97356 -14.69626 -14.49113 -13.97096 -13.64043 -13.46031 -13.36002 -13.27973 -13.03779 -12.91462 -12.91018 -12.60948 -12.47975 -12.20249 -12.12122 -12.07300 -11.53749 -11.47785 -11.39380 -11.22755 -11.01328 -10.97393 -10.85193 -10.53263 -10.02230 -9.00182 -7.95274 -5.23623 1.48237 1.50657 1.56742 1.69212 2.26429 2.55972 3.37103 3.57553 3.70351 3.74067 3.74477 3.79400 3.87390 4.00176 4.06721 4.15874 4.32030 4.32195 4.40260 4.43465 4.49716 4.72484 4.77406 4.85623 4.87551 4.90435 4.92050 4.95464 4.98703 5.06230 5.11161 5.11855 5.17161 5.29147 5.32499 5.35745 5.42202 5.49939 5.56624 5.65137 5.66182 6.28271 6.59638 7.28769 7.33350 8.10308 8.32923 9.27811 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032222 B = 0.002768 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.767697 B =10112.000270 C =10513.339435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.113 0.887 4 C 0.511 3.489 5 O -0.584 6.584 6 N -0.720 5.720 7 C 0.140 3.860 8 C -0.102 4.102 9 H 0.082 0.918 10 C -0.152 4.152 11 C 0.144 3.856 12 H 0.059 0.941 13 N -0.719 5.719 14 C -0.244 4.244 15 H 0.076 0.924 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.278 1.278 22 C -0.136 4.136 23 C -0.093 4.093 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.124 4.124 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.410 0.590 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 -6.209 -21.852 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.131 0.869 4 C 0.299 3.701 5 O -0.464 6.464 6 N -0.372 5.372 7 C 0.017 3.983 8 C -0.120 4.120 9 H 0.100 0.900 10 C -0.192 4.192 11 C 0.034 3.966 12 H 0.077 0.923 13 N -0.358 5.358 14 C -0.376 4.376 15 H 0.094 0.906 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.204 1.204 22 C -0.175 4.175 23 C -0.112 4.112 24 C -0.179 4.179 25 C -0.177 4.177 26 C -0.162 4.162 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.246 0.754 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.207 0.793 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.727 -6.943 -21.761 23.004 hybrid contribution -0.478 0.871 1.047 1.443 sum 2.249 -6.072 -20.714 21.702 Atomic orbital electron populations 1.21754 0.91503 1.02572 1.03926 1.21407 0.98477 1.00750 0.91112 0.86925 1.21269 0.79210 0.84151 0.85499 1.90653 1.39911 1.28365 1.87478 1.46084 1.53405 1.32277 1.05396 1.21250 0.98405 0.95777 0.82916 1.22489 0.97154 0.99492 0.92909 0.90006 1.23696 0.95892 1.00766 0.98867 1.21379 0.95223 0.87483 0.92511 0.92277 1.42287 1.43639 1.06336 1.43500 1.19633 1.11803 0.94513 1.11604 0.90610 1.25547 1.02368 0.95777 1.03002 1.69800 1.44611 1.00448 1.47088 0.85226 0.79117 0.76224 0.79276 1.20496 1.22233 1.20370 1.23351 0.97201 1.01815 0.95138 1.22329 0.96574 0.99340 0.92937 1.22985 0.96333 1.01253 0.97302 1.22831 0.96995 1.02237 0.95600 1.22938 0.97047 1.01517 0.94673 0.91552 0.89390 0.93037 0.75372 0.91796 0.92310 0.93207 0.89200 0.79342 0.93988 0.87828 0.92420 0.90649 0.89996 0.93347 0.90326 0.90411 0.90659 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.91 71.98 0.64 -1.31 16 2 C -0.10 -1.66 2.45 -11.54 -0.03 -1.69 16 3 H 0.11 1.58 7.98 -2.39 -0.02 1.56 16 4 C 0.51 12.61 7.13 87.66 0.62 13.23 16 5 O -0.58 -19.04 15.82 -3.02 -0.05 -19.08 16 6 N -0.72 -16.57 5.45 -463.06 -2.52 -19.09 16 7 C 0.14 3.59 5.51 86.38 0.48 4.07 16 8 C -0.10 -2.90 3.63 -10.26 -0.04 -2.94 16 9 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 10 C -0.15 -4.79 7.43 31.12 0.23 -4.56 16 11 C 0.14 5.47 4.56 45.52 0.21 5.68 16 12 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 13 N -0.72 -35.38 5.31 -320.44 -1.70 -37.08 16 14 C -0.24 -13.32 9.97 84.03 0.84 -12.49 16 15 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 16 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 17 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 18 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.14 -4.17 7.39 31.12 0.23 -3.94 16 23 C -0.09 -1.65 2.51 -10.27 -0.03 -1.67 16 24 C -0.14 -2.54 7.54 31.18 0.24 -2.31 16 25 C -0.14 -1.88 8.09 31.18 0.25 -1.63 16 26 C -0.12 -1.53 6.75 31.12 0.21 -1.32 16 27 H 0.07 0.88 7.56 -2.39 -0.02 0.86 16 28 H 0.09 0.90 7.50 -2.39 -0.02 0.88 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.41 8.02 7.89 -92.71 -0.73 7.29 16 31 H 0.06 1.68 7.84 -2.39 -0.02 1.67 16 32 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 2.46 7.90 -2.39 -0.02 2.44 16 35 H 0.37 19.69 7.90 -92.71 -0.73 18.96 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.10 2.65 8.10 -2.39 -0.02 2.63 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.65 7.91 -2.39 -0.02 1.63 16 40 H 0.08 1.37 7.99 -2.39 -0.02 1.35 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 Total: -1.00 -66.64 362.06 1.86 -64.78 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.50 Total: 35.67 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.32 Total: -14.62 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -3.94 Total: -114.22 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -66.64 1.86 -64.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656207454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.672 kcal (2) G-P(sol) polarization free energy of solvation -66.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds