Wall clock time and date at job start Fri Apr 10 2020 17:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46817 * 2 1 4 4 C 1.36941 * 120.00062 * 275.30718 * 3 2 1 5 5 H 1.07995 * 119.99526 * 37.58912 * 4 3 2 6 6 C 1.38813 * 119.99906 * 217.58185 * 4 3 2 7 7 N 1.31621 * 120.00190 * 21.42982 * 6 4 3 8 8 Si 1.86800 * 119.99512 * 201.42871 * 6 4 3 9 9 H 1.48495 * 109.47209 * 90.00503 * 8 6 4 10 10 H 1.48509 * 109.46869 * 209.99745 * 8 6 4 11 11 H 1.48498 * 109.47490 * 330.00005 * 8 6 4 12 12 C 1.46501 * 119.99733 * 95.31432 * 3 2 1 13 13 C 1.52998 * 109.47231 * 269.99537 * 12 3 2 14 14 C 1.53003 * 109.47219 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46936 * 179.97438 * 14 13 12 16 16 C 1.34768 * 119.99766 * 179.72081 * 15 14 13 17 17 O 1.21612 * 120.00400 * 359.97438 * 16 15 14 18 18 C 1.47106 * 120.00019 * 180.02562 * 16 15 14 19 19 C 1.50699 * 119.99890 * 359.97438 * 18 16 15 20 20 C 1.32998 * 119.99877 * 180.02562 * 18 16 15 21 21 C 1.51398 * 136.31794 * 359.62139 * 20 18 16 22 22 C 1.53381 * 87.51801 * 206.06295 * 21 20 18 23 23 C 1.51402 * 136.31248 * 179.97438 * 20 18 16 24 24 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47004 * 299.99781 * 1 2 3 26 26 H 1.08997 * 109.47185 * 59.99715 * 1 2 3 27 27 H 1.08996 * 109.46649 * 240.00192 * 2 1 3 28 28 H 1.08997 * 109.47185 * 120.00285 * 2 1 3 29 29 H 0.97004 * 119.99826 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.47177 * 149.99764 * 12 3 2 31 31 H 1.08998 * 109.47301 * 30.00081 * 12 3 2 32 32 H 1.09001 * 109.47146 * 59.99806 * 13 12 3 33 33 H 1.09004 * 109.46913 * 300.00044 * 13 12 3 34 34 H 1.08998 * 109.47168 * 59.99765 * 14 13 12 35 35 H 1.09004 * 109.46801 * 299.99607 * 14 13 12 36 36 H 0.97003 * 119.99950 * 359.97438 * 15 14 13 37 37 H 1.09006 * 109.46568 * 90.00677 * 19 18 16 38 38 H 1.09001 * 109.47333 * 210.00389 * 19 18 16 39 39 H 1.08996 * 109.47515 * 330.00922 * 19 18 16 40 40 H 1.09000 * 113.55942 * 320.64053 * 21 20 18 41 41 H 1.09001 * 113.56483 * 91.37641 * 21 20 18 42 42 H 1.09002 * 113.96732 * 220.29257 * 22 21 20 43 43 H 1.09000 * 113.59948 * 88.79365 * 22 21 20 44 44 H 1.09000 * 113.56534 * 268.62322 * 23 20 18 45 45 H 1.09005 * 113.56395 * 39.35673 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4104 1.9278 -1.9626 6 6 3.2111 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0992 4.2795 -2.6584 9 1 2.5375 5.5068 -2.0394 10 1 4.4549 4.5696 -3.1909 11 1 2.2165 3.8358 -3.7671 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7381 1.8367 14 6 1.5134 3.4190 3.1557 15 7 0.3352 4.0951 3.7044 16 6 0.4238 4.7618 4.8722 17 8 1.4816 4.8018 5.4709 18 6 -0.7594 5.4402 5.4235 19 6 -2.0703 5.3902 4.6819 20 6 -0.6718 6.0985 6.5758 21 6 0.4094 6.3767 7.5984 22 6 -0.7069 6.5264 8.6396 23 6 -1.6106 6.8989 7.4535 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.0489 3.4032 -0.7830 30 1 3.1617 2.7641 1.0860 31 1 2.7256 1.2832 1.9721 32 1 0.3541 2.0067 2.0139 33 1 0.7904 3.4876 1.1278 34 1 2.3018 4.1504 2.9780 35 1 1.8659 2.6698 3.8647 36 1 -0.5095 4.0598 3.2289 37 1 -2.6409 4.5217 5.0111 38 1 -2.6387 6.2973 4.8871 39 1 -1.8796 5.3152 3.6114 40 1 1.0639 5.5249 7.7831 41 1 0.9582 7.2999 7.4121 42 1 -0.5479 7.3421 9.3450 43 1 -0.9800 5.5891 9.1243 44 1 -1.6156 7.9652 7.2275 45 1 -2.6128 6.4753 7.5194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660524870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:45 Heat of formation + Delta-G solvation = 5.722519 kcal Electronic energy + Delta-G solvation = -21864.625424 eV Core-core repulsion = 18690.350935 eV Total energy + Delta-G solvation = -3174.274490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91634 -38.37814 -36.38882 -34.70879 -33.31338 -31.84498 -30.92488 -28.48297 -26.73218 -25.75474 -25.36776 -23.83362 -22.65933 -21.03830 -20.52783 -20.00905 -18.10671 -16.70247 -16.46571 -15.84232 -15.73823 -15.27043 -14.84322 -14.30543 -14.07668 -13.78515 -13.49904 -13.41333 -13.01825 -12.64377 -12.58977 -12.52166 -12.35265 -12.09812 -11.77886 -11.56747 -11.38211 -11.16494 -11.10533 -10.99974 -10.75567 -10.63821 -10.51507 -10.44088 -10.02201 -9.69052 -9.52143 -9.47276 -9.02339 -8.67433 -8.45703 -6.55044 -5.76771 -3.36342 1.32086 3.35281 3.39137 3.40810 3.44569 3.45182 4.25085 4.35398 4.48826 4.54442 4.88324 4.89913 5.12395 5.27037 5.33770 5.40761 5.44347 5.44582 5.53819 5.59120 5.70193 5.71813 5.86101 5.91858 6.01152 6.04141 6.11933 6.16194 6.32447 6.37941 6.45969 6.52840 6.57178 6.61863 6.78116 6.84865 6.92767 7.11802 7.19732 7.70238 7.77668 7.84028 8.45279 8.54275 9.21494 9.83843 10.42816 11.22539 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.003411 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.940171 B = 8207.252715 C = 8696.299509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.121 3.879 15 N -0.722 5.722 16 C 0.550 3.450 17 O -0.545 6.545 18 C -0.163 4.163 19 C -0.110 4.110 20 C -0.076 4.076 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.105 4.105 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.255 0.745 30 H 0.095 0.905 31 H 0.025 0.975 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.398 0.602 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 5.656 14.279 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.003 4.003 15 N -0.373 5.373 16 C 0.338 3.662 17 O -0.424 6.424 18 C -0.166 4.166 19 C -0.167 4.167 20 C -0.078 4.078 21 C -0.139 4.139 22 C -0.179 4.179 23 C -0.142 4.142 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.000 5.722 14.649 19.783 hybrid contribution -0.529 0.726 -0.958 1.314 sum -12.529 6.448 13.691 19.647 Atomic orbital electron populations 1.22371 1.00199 0.98868 1.01095 1.20843 0.91659 0.87415 0.98707 1.43751 1.76062 1.08190 1.02514 1.18989 1.04630 1.21222 0.94166 0.92322 1.25192 0.94211 1.01302 0.98078 1.70003 1.03196 1.37187 1.42421 0.86412 0.76946 0.82661 0.81483 1.21320 1.21728 1.20284 1.20792 0.94448 0.96632 0.85725 1.22533 1.02341 0.99852 0.93956 1.21471 0.87140 0.96082 0.95561 1.46121 1.14506 1.53640 1.23044 1.18247 0.88109 0.78814 0.81013 1.90759 1.30033 1.61713 1.59907 1.20542 0.95975 1.04305 0.95761 1.20681 0.93608 1.02636 0.99727 1.23189 0.99086 0.93914 0.91639 1.22154 0.96128 1.03065 0.92517 1.22719 0.97173 1.02072 0.95969 1.22278 0.97901 0.99877 0.94094 0.94647 0.93810 0.93281 0.93898 0.94849 0.93514 0.88752 0.95693 0.93088 0.91760 0.91548 0.92040 0.76712 0.91144 0.91315 0.91347 0.89622 0.88651 0.90567 0.89849 0.88391 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 10.21 37.16 0.38 -2.59 16 2 C 0.14 2.96 6.44 -4.04 -0.03 2.93 16 3 N -0.58 -14.33 2.43 -173.24 -0.42 -14.75 16 4 C -0.26 -7.01 9.45 -15.06 -0.14 -7.15 16 5 H 0.06 1.59 7.92 -52.49 -0.42 1.17 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.42 11.47 55.49 0.64 -24.79 16 8 Si 0.90 21.45 29.60 -169.99 -5.03 16.42 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.15 3.46 5.33 -4.04 -0.02 3.44 16 13 C -0.15 -2.76 5.65 -26.73 -0.15 -2.91 16 14 C 0.12 2.12 5.67 -4.04 -0.02 2.09 16 15 N -0.72 -10.88 5.50 -61.49 -0.34 -11.22 16 16 C 0.55 8.77 7.75 -12.67 -0.10 8.67 16 17 O -0.54 -10.52 15.15 5.27 0.08 -10.44 16 18 C -0.16 -2.02 6.00 -102.84 -0.62 -2.64 16 19 C -0.11 -0.99 9.57 36.01 0.34 -0.65 16 20 C -0.08 -0.87 6.59 -100.49 -0.66 -1.53 16 21 C -0.10 -1.12 6.99 -27.56 -0.19 -1.31 16 22 C -0.14 -1.13 8.17 -26.18 -0.21 -1.35 16 23 C -0.10 -0.83 7.71 -27.40 -0.21 -1.04 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.76 6.64 -51.93 -0.34 0.41 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 28 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.09 2.47 5.52 -51.92 -0.29 2.19 16 31 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 32 H 0.05 0.90 6.64 -51.93 -0.34 0.56 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 5.01 6.58 -40.82 -0.27 4.74 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 39 H 0.07 0.60 6.71 -51.93 -0.35 0.25 16 40 H 0.09 1.11 7.49 -51.93 -0.39 0.72 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -30.98 363.02 -9.16 -40.13 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.83 Total: 2.95 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.72 Total: -3.78 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.12 Total: -50.75 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.98 -9.16 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660524870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.857 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds