Wall clock time and date at job start Fri Apr 10 2020 17:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46817 * 2 1 4 4 C 1.36941 * 120.00062 * 275.30718 * 3 2 1 5 5 H 1.07995 * 119.99526 * 37.58912 * 4 3 2 6 6 C 1.38813 * 119.99906 * 217.58185 * 4 3 2 7 7 N 1.31621 * 120.00190 * 21.42982 * 6 4 3 8 8 Si 1.86800 * 119.99512 * 201.42871 * 6 4 3 9 9 H 1.48495 * 109.47209 * 90.00503 * 8 6 4 10 10 H 1.48509 * 109.46869 * 209.99745 * 8 6 4 11 11 H 1.48498 * 109.47490 * 330.00005 * 8 6 4 12 12 C 1.46501 * 119.99733 * 95.31432 * 3 2 1 13 13 C 1.52998 * 109.47231 * 269.99537 * 12 3 2 14 14 C 1.53003 * 109.47219 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46936 * 179.97438 * 14 13 12 16 16 C 1.34768 * 119.99766 * 179.72081 * 15 14 13 17 17 O 1.21612 * 120.00400 * 359.97438 * 16 15 14 18 18 C 1.47106 * 120.00019 * 180.02562 * 16 15 14 19 19 C 1.50699 * 119.99890 * 359.97438 * 18 16 15 20 20 C 1.32998 * 119.99877 * 180.02562 * 18 16 15 21 21 C 1.51398 * 136.31794 * 359.62139 * 20 18 16 22 22 C 1.53381 * 87.51801 * 206.06295 * 21 20 18 23 23 C 1.51402 * 136.31248 * 179.97438 * 20 18 16 24 24 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47004 * 299.99781 * 1 2 3 26 26 H 1.08997 * 109.47185 * 59.99715 * 1 2 3 27 27 H 1.08996 * 109.46649 * 240.00192 * 2 1 3 28 28 H 1.08997 * 109.47185 * 120.00285 * 2 1 3 29 29 H 0.97004 * 119.99826 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.47177 * 149.99764 * 12 3 2 31 31 H 1.08998 * 109.47301 * 30.00081 * 12 3 2 32 32 H 1.09001 * 109.47146 * 59.99806 * 13 12 3 33 33 H 1.09004 * 109.46913 * 300.00044 * 13 12 3 34 34 H 1.08998 * 109.47168 * 59.99765 * 14 13 12 35 35 H 1.09004 * 109.46801 * 299.99607 * 14 13 12 36 36 H 0.97003 * 119.99950 * 359.97438 * 15 14 13 37 37 H 1.09006 * 109.46568 * 90.00677 * 19 18 16 38 38 H 1.09001 * 109.47333 * 210.00389 * 19 18 16 39 39 H 1.08996 * 109.47515 * 330.00922 * 19 18 16 40 40 H 1.09000 * 113.55942 * 320.64053 * 21 20 18 41 41 H 1.09001 * 113.56483 * 91.37641 * 21 20 18 42 42 H 1.09002 * 113.96732 * 220.29257 * 22 21 20 43 43 H 1.09000 * 113.59948 * 88.79365 * 22 21 20 44 44 H 1.09000 * 113.56534 * 268.62322 * 23 20 18 45 45 H 1.09005 * 113.56395 * 39.35673 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4104 1.9278 -1.9626 6 6 3.2111 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0992 4.2795 -2.6584 9 1 2.5375 5.5068 -2.0394 10 1 4.4549 4.5696 -3.1909 11 1 2.2165 3.8358 -3.7671 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7381 1.8367 14 6 1.5134 3.4190 3.1557 15 7 0.3352 4.0951 3.7044 16 6 0.4238 4.7618 4.8722 17 8 1.4816 4.8018 5.4709 18 6 -0.7594 5.4402 5.4235 19 6 -2.0703 5.3902 4.6819 20 6 -0.6718 6.0985 6.5758 21 6 0.4094 6.3767 7.5984 22 6 -0.7069 6.5264 8.6396 23 6 -1.6106 6.8989 7.4535 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.0489 3.4032 -0.7830 30 1 3.1617 2.7641 1.0860 31 1 2.7256 1.2832 1.9721 32 1 0.3541 2.0067 2.0139 33 1 0.7904 3.4876 1.1278 34 1 2.3018 4.1504 2.9780 35 1 1.8659 2.6698 3.8647 36 1 -0.5095 4.0598 3.2289 37 1 -2.6409 4.5217 5.0111 38 1 -2.6387 6.2973 4.8871 39 1 -1.8796 5.3152 3.6114 40 1 1.0639 5.5249 7.7831 41 1 0.9582 7.2999 7.4121 42 1 -0.5479 7.3421 9.3450 43 1 -0.9800 5.5891 9.1243 44 1 -1.6156 7.9652 7.2275 45 1 -2.6128 6.4753 7.5194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660524870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:44 Heat of formation + Delta-G solvation = -11.850300 kcal Electronic energy + Delta-G solvation = -21865.387439 eV Core-core repulsion = 18690.350935 eV Total energy + Delta-G solvation = -3175.036504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03759 -39.32243 -38.15791 -36.18130 -34.29378 -33.80087 -32.39360 -30.20149 -27.51103 -27.17799 -26.40469 -25.47238 -23.74972 -22.57832 -22.04130 -21.38394 -19.18961 -18.61952 -17.43033 -17.14751 -16.98026 -16.64736 -16.29521 -15.72519 -15.71564 -15.03934 -14.95761 -14.66139 -14.24738 -14.06974 -13.87362 -13.34348 -13.32891 -13.23706 -13.16808 -12.86846 -12.75675 -12.72925 -12.58769 -12.46738 -12.32117 -12.13908 -11.92973 -11.88594 -11.48451 -11.41569 -11.24997 -10.69355 -10.50062 -10.19835 -9.73452 -8.55400 -7.80947 -5.45522 0.35230 1.45121 1.47711 1.55705 2.18257 2.24321 2.51074 3.23863 3.41661 3.58062 3.66182 3.82050 3.98748 4.13643 4.23740 4.28503 4.42675 4.44477 4.53089 4.71864 4.72771 4.74096 4.77013 4.80085 4.82928 4.88753 4.98728 5.00431 5.03177 5.04265 5.08256 5.15593 5.33463 5.35735 5.36691 5.42620 5.45504 5.60596 5.69580 5.73712 5.83188 6.48033 6.58648 7.18471 7.23529 7.88403 8.41158 9.13740 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.003411 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.940171 B = 8207.252715 C = 8696.299509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.263 4.263 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.286 1.286 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.151 3.849 13 C -0.122 4.122 14 C 0.134 3.866 15 N -0.713 5.713 16 C 0.542 3.458 17 O -0.589 6.589 18 C -0.182 4.182 19 C -0.104 4.104 20 C -0.081 4.081 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.090 4.090 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.029 0.971 28 H 0.044 0.956 29 H 0.250 0.750 30 H 0.059 0.941 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.080 6.324 15.004 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.394 4.394 5 H 0.074 0.926 6 C -0.234 4.234 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.212 1.212 10 H -0.223 1.223 11 H -0.191 1.191 12 C 0.025 3.975 13 C -0.162 4.162 14 C 0.009 3.991 15 N -0.365 5.365 16 C 0.332 3.668 17 O -0.472 6.472 18 C -0.185 4.185 19 C -0.161 4.161 20 C -0.083 4.083 21 C -0.156 4.156 22 C -0.167 4.167 23 C -0.126 4.126 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.250 0.750 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.135 0.865 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.174 6.372 15.363 22.513 hybrid contribution 0.504 0.451 -1.113 1.302 sum -14.670 6.823 14.250 21.559 Atomic orbital electron populations 1.22169 0.97185 1.00811 1.00852 1.21003 0.93912 0.85653 0.98612 1.43996 1.76469 1.09600 1.02255 1.19197 1.04081 1.21247 0.94836 0.92601 1.25874 0.93997 1.03369 1.00208 1.70138 1.03817 1.38012 1.44289 0.85465 0.76594 0.80032 0.79577 1.21243 1.22254 1.19137 1.20681 0.95227 0.96062 0.85576 1.22166 1.00743 0.99511 0.93774 1.21124 0.87580 0.95408 0.94990 1.45946 1.14256 1.53229 1.23073 1.18965 0.88861 0.78346 0.80599 1.90736 1.32048 1.63332 1.61062 1.20585 0.95908 1.05199 0.96844 1.20715 0.91931 1.04174 0.99252 1.23723 1.00539 0.92974 0.91055 1.22304 0.96745 1.01959 0.94573 1.22703 0.95164 1.03010 0.95852 1.22326 0.98000 1.00315 0.91969 0.91603 0.93058 0.94423 0.95209 0.93787 0.94052 0.92297 0.95487 0.91086 0.92935 0.94017 0.92369 0.75013 0.89907 0.89409 0.91277 0.92655 0.88519 0.88488 0.89652 0.86527 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.21 71.98 0.73 -4.31 16 2 C 0.13 5.51 6.44 86.38 0.56 6.07 16 3 N -0.60 -29.55 2.43 -702.01 -1.71 -31.26 16 4 C -0.26 -14.25 9.45 84.03 0.79 -13.46 16 5 H 0.06 3.02 7.92 -2.91 -0.02 2.99 16 6 C -0.04 -2.06 4.95 84.86 0.42 -1.64 16 7 N -0.92 -54.23 11.47 21.65 0.25 -53.99 16 8 Si 0.96 44.63 29.60 68.60 2.03 46.66 16 9 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 10 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 C 0.15 7.05 5.33 86.38 0.46 7.51 16 13 C -0.12 -4.56 5.65 30.59 0.17 -4.39 16 14 C 0.13 4.77 5.67 86.38 0.49 5.26 16 15 N -0.71 -21.31 5.50 -466.71 -2.57 -23.88 16 16 C 0.54 17.42 7.75 86.57 0.67 18.09 16 17 O -0.59 -23.72 15.15 -4.07 -0.06 -23.78 16 18 C -0.18 -4.31 6.00 -18.70 -0.11 -4.42 16 19 C -0.10 -1.61 9.57 71.24 0.68 -0.92 16 20 C -0.08 -1.72 6.59 -17.18 -0.11 -1.83 16 21 C -0.12 -2.58 6.99 30.06 0.21 -2.37 16 22 C -0.13 -1.76 8.17 30.95 0.25 -1.51 16 23 C -0.09 -1.11 7.71 30.16 0.23 -0.88 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.63 6.64 -2.39 -0.02 1.61 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 28 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 29 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.06 3.21 5.52 -2.38 -0.01 3.20 16 31 H 0.03 1.21 7.86 -2.39 -0.02 1.19 16 32 H 0.07 2.38 6.64 -2.39 -0.02 2.37 16 33 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.41 9.84 6.58 -92.71 -0.61 9.23 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.03 7.91 -2.39 -0.02 1.01 16 39 H 0.07 1.04 6.71 -2.39 -0.02 1.02 16 40 H 0.05 1.52 7.49 -2.39 -0.02 1.50 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -69.09 363.02 3.74 -65.35 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.35 Total: 19.71 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 5.45 Total: 1.19 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.03 Total: -109.12 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.09 3.74 -65.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660524870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.497 kcal (2) G-P(sol) polarization free energy of solvation -69.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds