Wall clock time and date at job start Fri Apr 10 2020 17:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46637 * 2 1 4 4 C 1.36932 * 120.00229 * 264.98157 * 3 2 1 5 5 H 1.08001 * 120.00171 * 143.24987 * 4 3 2 6 6 C 1.38813 * 120.00018 * 323.24430 * 4 3 2 7 7 N 1.31621 * 119.99990 * 339.41342 * 6 4 3 8 8 Si 1.86795 * 119.99967 * 159.40587 * 6 4 3 9 9 H 1.48495 * 109.47120 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47108 * 120.00647 * 8 6 4 11 11 H 1.48500 * 109.47478 * 240.00025 * 8 6 4 12 12 C 1.46503 * 119.99719 * 84.99073 * 3 2 1 13 13 C 1.52994 * 109.47456 * 89.99027 * 12 3 2 14 14 N 1.46505 * 109.47251 * 179.97438 * 13 12 3 15 15 C 1.34771 * 120.00186 * 180.02562 * 14 13 12 16 16 O 1.21284 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00013 * 180.02562 * 15 14 13 18 18 H 1.09002 * 110.05441 * 25.40418 * 17 15 14 19 19 C 1.54395 * 110.07013 * 146.88651 * 17 15 14 20 20 C 1.55017 * 104.17778 * 142.76185 * 19 17 15 21 21 C 1.54991 * 102.85480 * 322.33799 * 20 19 17 22 22 C 1.53476 * 110.07422 * 263.91423 * 17 15 14 23 23 C 1.52570 * 121.05540 * 96.53996 * 22 17 15 24 24 C 1.52552 * 121.08090 * 24.82915 * 22 17 15 25 25 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46994 * 299.99896 * 1 2 3 27 27 H 1.08996 * 109.47503 * 59.99570 * 1 2 3 28 28 H 1.08997 * 109.46934 * 240.00635 * 2 1 3 29 29 H 1.08996 * 109.46760 * 120.00402 * 2 1 3 30 30 H 0.97002 * 120.00012 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47030 * 329.98896 * 12 3 2 32 32 H 1.09000 * 109.47115 * 209.99481 * 12 3 2 33 33 H 1.08998 * 109.47845 * 300.00238 * 13 12 3 34 34 H 1.09004 * 109.46803 * 60.00323 * 13 12 3 35 35 H 0.97005 * 119.99479 * 0.02562 * 14 13 12 36 36 H 1.09003 * 110.48138 * 261.48401 * 19 17 15 37 37 H 1.08991 * 110.47902 * 24.11801 * 19 17 15 38 38 H 1.08998 * 110.75029 * 203.97776 * 20 19 17 39 39 H 1.08999 * 110.85771 * 80.74030 * 20 19 17 40 40 H 1.08998 * 110.50937 * 278.89732 * 21 20 19 41 41 H 1.08996 * 110.62681 * 156.24090 * 21 20 19 42 42 H 1.08995 * 117.50634 * 356.98219 * 23 22 17 43 43 H 1.08997 * 117.50951 * 142.06604 * 23 22 17 44 44 H 1.09006 * 117.51197 * 217.88926 * 24 22 17 45 45 H 1.09000 * 117.51509 * 2.93682 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3442 1.9923 -1.1813 5 1 2.1326 3.0418 -1.3228 6 6 2.9469 1.2627 -2.1969 7 7 3.5677 0.1359 -1.9186 8 14 2.8766 1.8799 -3.9585 9 1 2.1263 3.1606 -4.0048 10 1 4.2566 2.0967 -4.4625 11 1 2.1917 0.8734 -4.8088 12 6 2.1579 2.1088 1.2639 13 6 3.5612 1.8830 1.8301 14 7 3.7010 2.6111 3.0937 15 6 4.8616 2.5586 3.7768 16 8 5.7901 1.9083 3.3457 17 6 5.0051 3.3070 5.0769 18 1 4.0272 3.4471 5.5375 19 6 5.9356 2.5318 6.0346 20 6 6.7400 3.6396 6.7618 21 6 6.9785 4.6841 5.6419 22 6 5.6711 4.6676 4.8307 23 6 4.8365 5.9346 4.6688 24 6 5.5873 5.3506 3.4692 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9891 -0.3737 -2.6282 31 1 1.4163 1.7462 1.9757 32 1 2.0035 3.1736 1.0893 33 1 3.7157 0.8183 2.0048 34 1 4.3028 2.2457 1.1183 35 1 2.9581 3.1308 3.4387 36 1 5.3506 1.9525 6.7490 37 1 6.6053 1.8814 5.4721 38 1 7.6872 3.2484 7.1331 39 1 6.1572 4.0719 7.5751 40 1 7.8201 4.3874 5.0159 41 1 7.1508 5.6721 6.0687 42 1 3.7519 5.8283 4.6842 43 1 5.2256 6.8533 5.1077 44 1 6.4702 5.8854 3.1189 45 1 4.9969 4.8601 2.6953 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663397033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:53 Heat of formation + Delta-G solvation = -28.181403 kcal Electronic energy + Delta-G solvation = -22547.258484 eV Core-core repulsion = 19371.513810 eV Total energy + Delta-G solvation = -3175.744674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45880 -39.11326 -38.01744 -35.85675 -34.96186 -33.52372 -31.87704 -30.48378 -28.84429 -26.75566 -25.80383 -24.07983 -23.39895 -22.29019 -21.90618 -21.35359 -19.80627 -18.64133 -17.95468 -17.03915 -16.86915 -16.75557 -16.12310 -15.96634 -15.54123 -15.40018 -15.20230 -14.47405 -14.44083 -14.01145 -13.88140 -13.64270 -13.44140 -13.22095 -12.87191 -12.68796 -12.55442 -12.44521 -12.39138 -12.25064 -11.99841 -11.96474 -11.82133 -11.71626 -11.52928 -11.46645 -11.16844 -11.11924 -10.56692 -10.42347 -10.06473 -8.64237 -7.87386 -5.48831 1.43384 1.46189 1.56456 1.65008 2.17363 2.50194 2.86028 3.22871 3.39486 3.63298 3.71530 3.87472 3.91762 4.08920 4.23982 4.26583 4.32444 4.40474 4.48082 4.54579 4.66883 4.67407 4.77516 4.79085 4.90725 4.92384 4.93688 5.01713 5.06444 5.07304 5.15409 5.16902 5.17895 5.19721 5.23989 5.28855 5.45597 5.49578 5.54589 5.65323 5.83972 6.43472 6.63372 7.13300 7.33326 7.81433 8.33003 9.10954 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.003906 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.258766 B = 7166.821809 C = 7586.360975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.139 3.861 3 N -0.596 5.596 4 C -0.269 4.269 5 H 0.062 0.938 6 C -0.038 4.038 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.263 1.263 10 H -0.295 1.295 11 H -0.287 1.287 12 C 0.145 3.855 13 C 0.123 3.877 14 N -0.711 5.711 15 C 0.511 3.489 16 O -0.594 6.594 17 C -0.070 4.070 18 H 0.122 0.878 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.088 4.088 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.199 4.199 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.251 0.749 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 10.517 18.808 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.013 3.987 3 N -0.317 5.317 4 C -0.400 4.400 5 H 0.080 0.920 6 C -0.235 4.235 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.187 1.187 10 H -0.223 1.223 11 H -0.213 1.213 12 C 0.018 3.982 13 C -0.004 4.004 14 N -0.363 5.363 15 C 0.298 3.702 16 O -0.474 6.474 17 C -0.091 4.091 18 H 0.139 0.861 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.169 4.169 24 C -0.236 4.236 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.250 0.750 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.112 9.935 18.372 20.886 hybrid contribution 0.218 -0.186 -1.572 1.598 sum 0.106 9.749 16.799 19.424 Atomic orbital electron populations 1.22105 0.97471 1.00398 1.00720 1.20847 0.92279 0.85679 0.99902 1.44059 1.73960 1.12217 1.01445 1.19358 1.33171 0.95486 0.91940 0.92026 1.25922 0.96347 0.98304 1.02956 1.70160 1.35882 1.18040 1.32305 0.85355 0.76940 0.78341 0.80690 1.18714 1.22262 1.21309 1.21151 0.91930 0.97041 0.88083 1.21805 1.00717 0.94221 0.83703 1.46054 1.15612 1.51361 1.23300 1.21351 0.81611 0.80231 0.86966 1.90667 1.41029 1.44657 1.71091 1.21519 1.02527 0.93557 0.91512 0.86052 1.22403 0.97839 0.98114 0.97058 1.22447 1.00397 0.94587 0.97219 1.21905 0.93917 1.00652 0.96088 1.21635 0.99265 0.91958 0.99823 1.23155 0.99109 0.95731 0.98858 1.22984 1.03748 1.05153 0.91742 0.92406 0.92834 0.94425 0.92217 0.96207 0.94015 0.91216 0.92262 0.95514 0.96048 0.74968 0.89463 0.93067 0.90613 0.88867 0.93111 0.89219 0.87133 0.86436 0.88865 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 10.24 71.98 0.74 -4.88 16 2 C 0.14 6.56 5.95 86.38 0.51 7.07 16 3 N -0.60 -29.26 2.43 -702.01 -1.71 -30.97 16 4 C -0.27 -14.67 9.47 84.03 0.80 -13.87 16 5 H 0.06 3.30 7.91 -2.91 -0.02 3.28 16 6 C -0.04 -2.13 4.93 84.86 0.42 -1.71 16 7 N -0.92 -55.23 11.43 21.65 0.25 -54.98 16 8 Si 0.96 45.05 29.60 68.60 2.03 47.08 16 9 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 C 0.14 5.72 5.80 86.38 0.50 6.22 16 13 C 0.12 5.17 6.00 86.38 0.52 5.69 16 14 N -0.71 -22.38 5.28 -463.07 -2.45 -24.83 16 15 C 0.51 17.14 5.58 87.66 0.49 17.63 16 16 O -0.59 -26.82 15.78 -3.04 -0.05 -26.87 16 17 C -0.07 -1.58 3.15 -10.91 -0.03 -1.62 16 18 H 0.12 1.94 8.13 -2.39 -0.02 1.92 16 19 C -0.12 -2.51 6.34 31.76 0.20 -2.31 16 20 C -0.11 -1.72 6.91 31.97 0.22 -1.50 16 21 C -0.09 -1.62 6.58 31.57 0.21 -1.41 16 22 C -0.13 -2.61 2.26 -52.02 -0.12 -2.73 16 23 C -0.13 -2.08 10.23 30.48 0.31 -1.77 16 24 C -0.20 -4.79 9.63 30.47 0.29 -4.50 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 3.29 5.49 -2.39 -0.01 3.28 16 29 H 0.02 0.91 8.11 -2.39 -0.02 0.89 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 32 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.41 9.41 8.46 -92.70 -0.78 8.62 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.48 6.93 -2.39 -0.02 1.47 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.22 8.11 -2.39 -0.02 1.20 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.07 2.13 7.08 -2.39 -0.02 2.12 16 Total: -1.00 -72.23 361.28 3.30 -68.93 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.17 Total: 21.31 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 5.06 Total: 0.32 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -3.91 Total: -110.78 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.23 3.30 -68.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663397033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.753 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds