Wall clock time and date at job start Fri Apr 10 2020 17:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 N 1.46501 * 109.47260 * 64.99377 * 4 2 1 6 6 C 1.36946 * 119.99989 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99808 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99850 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47239 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47289 * 119.99859 * 10 8 6 13 13 H 1.48496 * 109.46696 * 239.99699 * 10 8 6 14 14 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 15 15 N 1.46505 * 109.47212 * 295.00240 * 14 2 1 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47064 * 180.02562 * 18 16 15 20 20 C 1.29444 * 117.96118 * 94.73748 * 19 18 16 21 21 C 1.50065 * 124.07851 * 180.23323 * 20 19 18 22 22 C 1.53028 * 110.20150 * 343.32400 * 21 20 19 23 23 C 1.53397 * 108.43693 * 49.24059 * 22 21 20 24 24 C 1.50064 * 117.96406 * 274.99877 * 19 18 16 25 25 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 27 27 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 29 29 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 30 30 H 0.96994 * 120.00443 * 0.02562 * 5 4 2 31 31 H 0.97007 * 119.99791 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47153 * 175.00232 * 14 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 14 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 15 14 2 35 35 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 36 36 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 37 37 H 1.08001 * 117.96361 * 0.46759 * 20 19 18 38 38 H 1.08994 * 109.48858 * 223.00011 * 21 20 19 39 39 H 1.09000 * 109.17276 * 103.44159 * 21 20 19 40 40 H 1.09001 * 109.64024 * 289.56042 * 22 21 20 41 41 H 1.08995 * 109.64600 * 168.92784 * 22 21 20 42 42 H 1.09003 * 109.63993 * 172.88216 * 23 22 21 43 43 H 1.08994 * 109.64356 * 52.25305 * 23 22 21 44 44 H 1.08999 * 109.36370 * 283.05973 * 24 19 18 45 45 H 1.09005 * 109.35655 * 42.77877 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 2.0011 -0.4208 -3.6856 7 1 2.5615 -1.3384 -3.7865 8 6 1.6342 0.2964 -4.8161 9 7 0.9509 1.4145 -4.6931 10 14 2.1093 -0.3263 -6.5120 11 1 2.8684 -1.5955 -6.3786 12 1 0.8821 -0.5649 -7.3134 13 1 2.9554 0.6870 -7.1921 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6659 17 8 2.6257 -1.4436 3.7793 18 6 1.5974 0.3651 4.8932 19 6 2.0997 -0.3453 6.1237 20 6 3.2382 0.0248 6.6160 21 6 3.8688 -0.5902 7.8309 22 6 2.8284 -1.3883 8.6197 23 6 2.0832 -2.3098 7.6456 24 6 1.2517 -1.4419 6.6986 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1264 -0.7993 -1.2056 29 1 1.6055 -1.7198 -1.2951 30 1 1.1488 0.8594 -2.3518 31 1 0.6948 1.9158 -5.4831 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 1.1482 0.8591 2.3517 35 1 2.0327 1.3634 4.8473 36 1 0.5111 0.4441 4.9368 37 1 3.7654 0.8288 6.1239 38 1 4.2782 0.1958 8.4654 39 1 4.6737 -1.2555 7.5185 40 1 2.1218 -0.7047 9.0904 41 1 3.3266 -1.9872 9.3820 42 1 1.4261 -2.9774 8.2029 43 1 2.8022 -2.8938 7.0711 44 1 0.4182 -1.0040 7.2478 45 1 0.8653 -2.0617 5.8894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666526426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:03 Heat of formation + Delta-G solvation = -43.476557 kcal Electronic energy + Delta-G solvation = -21389.947076 eV Core-core repulsion = 18213.539155 eV Total energy + Delta-G solvation = -3176.407922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03342 -38.45840 -36.76596 -34.32986 -33.14625 -32.38848 -30.95275 -30.08174 -27.98680 -26.24908 -25.04714 -23.47665 -22.57641 -21.85225 -20.53733 -19.77858 -17.77746 -17.37036 -16.69988 -16.35073 -15.62491 -15.48214 -14.75448 -14.52547 -14.40990 -14.02632 -13.80762 -13.61276 -13.48624 -13.01570 -12.87086 -12.62510 -12.43032 -12.33870 -12.31701 -12.06273 -11.80461 -11.06636 -11.01587 -10.92024 -10.71023 -10.68775 -10.56722 -10.44288 -10.41481 -10.05681 -9.86897 -9.67505 -8.99851 -8.91843 -8.88516 -6.92604 -5.77673 -3.05945 2.01292 2.66033 3.32024 3.43242 3.49289 3.51347 4.35358 4.46780 4.59067 4.69398 4.81861 4.92197 4.99138 5.10281 5.13465 5.20921 5.23337 5.35928 5.37147 5.39168 5.41223 5.57561 5.59938 5.70203 5.74000 5.82060 5.85177 5.94729 5.97220 6.00836 6.11178 6.12142 6.25000 6.39173 6.45194 6.51536 6.64992 6.77326 6.82237 6.86789 7.52532 7.70771 8.25100 8.41576 9.52892 10.10228 10.45056 11.45424 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.051388 B = 0.002357 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.743361 B =11875.051916 C =11977.527300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.728 5.728 16 C 0.511 3.489 17 O -0.536 6.536 18 C -0.111 4.111 19 C -0.099 4.099 20 C -0.149 4.149 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.079 4.079 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.254 0.746 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -1.395 26.699 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.380 5.380 16 C 0.297 3.703 17 O -0.413 6.413 18 C -0.151 4.151 19 C -0.099 4.099 20 C -0.167 4.167 21 C -0.125 4.125 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.116 4.116 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.580 -2.261 26.625 26.728 hybrid contribution -0.166 0.521 -1.224 1.341 sum 0.414 -1.740 25.401 25.464 Atomic orbital electron populations 1.21786 0.94681 1.01906 1.01457 1.21549 0.96695 1.00468 0.94228 0.90584 1.20578 0.96601 0.94211 0.85403 1.42352 1.66939 1.27666 1.00606 1.19290 1.28555 1.05370 0.83646 0.91098 1.24743 1.01075 0.97433 0.97890 1.69668 1.43679 1.16622 1.28367 0.86101 0.77585 0.77841 0.84597 1.20538 1.21876 1.21886 1.21393 1.00032 0.95243 0.83014 1.46113 1.57915 1.27960 1.06002 1.20567 0.79529 0.85873 0.84371 1.90709 1.39475 1.24394 1.86677 1.20872 1.03182 0.99532 0.91541 1.20268 0.96768 0.97677 0.95226 1.21856 0.95795 1.00874 0.98142 1.20402 0.98115 0.99106 0.94835 1.21605 0.98110 0.98386 0.97640 1.21578 0.99190 0.97640 0.97233 1.20337 0.97240 0.95340 0.98708 0.93906 0.91179 0.92857 0.96151 0.96011 0.78218 0.93589 0.91507 0.91478 0.76595 0.88517 0.88435 0.88150 0.91296 0.90908 0.91877 0.91874 0.91855 0.91427 0.91230 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.94 37.16 0.33 -1.74 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.39 5.33 -59.91 -0.32 -18.71 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 10 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 15 N -0.73 -8.40 5.28 -60.29 -0.32 -8.72 16 16 C 0.51 6.36 7.82 -10.99 -0.09 6.27 16 17 O -0.54 -8.86 16.03 5.56 0.09 -8.77 16 18 C -0.11 -0.98 5.71 -29.03 -0.17 -1.15 16 19 C -0.10 -0.97 4.33 -100.94 -0.44 -1.41 16 20 C -0.15 -1.42 9.37 -35.90 -0.34 -1.76 16 21 C -0.09 -0.71 6.11 -28.18 -0.17 -0.88 16 22 C -0.12 -0.89 6.01 -26.51 -0.16 -1.05 16 23 C -0.12 -1.01 6.01 -26.51 -0.16 -1.17 16 24 C -0.08 -0.72 5.80 -28.18 -0.16 -0.88 16 25 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 26 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 27 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 3.64 7.65 -40.82 -0.31 3.33 16 35 H 0.10 0.69 7.80 -51.93 -0.40 0.28 16 36 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.10 0.91 7.74 -52.49 -0.41 0.51 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.71 361.96 -9.29 -42.00 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.03 Total: 6.83 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.86 Total: -8.13 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.09 Total: -54.89 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.71 -9.29 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666526426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.480 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds