Wall clock time and date at job start Fri Apr 10 2020 17:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 N 1.46501 * 109.47260 * 64.99377 * 4 2 1 6 6 C 1.36946 * 119.99989 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99808 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99850 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47239 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47289 * 119.99859 * 10 8 6 13 13 H 1.48496 * 109.46696 * 239.99699 * 10 8 6 14 14 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 15 15 N 1.46505 * 109.47212 * 295.00240 * 14 2 1 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47064 * 180.02562 * 18 16 15 20 20 C 1.29444 * 117.96118 * 94.73748 * 19 18 16 21 21 C 1.50065 * 124.07851 * 180.23323 * 20 19 18 22 22 C 1.53028 * 110.20150 * 343.32400 * 21 20 19 23 23 C 1.53397 * 108.43693 * 49.24059 * 22 21 20 24 24 C 1.50064 * 117.96406 * 274.99877 * 19 18 16 25 25 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 27 27 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 29 29 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 30 30 H 0.96994 * 120.00443 * 0.02562 * 5 4 2 31 31 H 0.97007 * 119.99791 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47153 * 175.00232 * 14 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 14 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 15 14 2 35 35 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 36 36 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 37 37 H 1.08001 * 117.96361 * 0.46759 * 20 19 18 38 38 H 1.08994 * 109.48858 * 223.00011 * 21 20 19 39 39 H 1.09000 * 109.17276 * 103.44159 * 21 20 19 40 40 H 1.09001 * 109.64024 * 289.56042 * 22 21 20 41 41 H 1.08995 * 109.64600 * 168.92784 * 22 21 20 42 42 H 1.09003 * 109.63993 * 172.88216 * 23 22 21 43 43 H 1.08994 * 109.64356 * 52.25305 * 23 22 21 44 44 H 1.08999 * 109.36370 * 283.05973 * 24 19 18 45 45 H 1.09005 * 109.35655 * 42.77877 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 2.0011 -0.4208 -3.6856 7 1 2.5615 -1.3384 -3.7865 8 6 1.6342 0.2964 -4.8161 9 7 0.9509 1.4145 -4.6931 10 14 2.1093 -0.3263 -6.5120 11 1 2.8684 -1.5955 -6.3786 12 1 0.8821 -0.5649 -7.3134 13 1 2.9554 0.6870 -7.1921 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6659 17 8 2.6257 -1.4436 3.7793 18 6 1.5974 0.3651 4.8932 19 6 2.0997 -0.3453 6.1237 20 6 3.2382 0.0248 6.6160 21 6 3.8688 -0.5902 7.8309 22 6 2.8284 -1.3883 8.6197 23 6 2.0832 -2.3098 7.6456 24 6 1.2517 -1.4419 6.6986 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1264 -0.7993 -1.2056 29 1 1.6055 -1.7198 -1.2951 30 1 1.1488 0.8594 -2.3518 31 1 0.6948 1.9158 -5.4831 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 1.1482 0.8591 2.3517 35 1 2.0327 1.3634 4.8473 36 1 0.5111 0.4441 4.9368 37 1 3.7654 0.8288 6.1239 38 1 4.2782 0.1958 8.4654 39 1 4.6737 -1.2555 7.5185 40 1 2.1218 -0.7047 9.0904 41 1 3.3266 -1.9872 9.3820 42 1 1.4261 -2.9774 8.2029 43 1 2.8022 -2.8938 7.0711 44 1 0.4182 -1.0040 7.2478 45 1 0.8653 -2.0617 5.8894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666526426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:03 Heat of formation + Delta-G solvation = -63.749815 kcal Electronic energy + Delta-G solvation = -21390.826191 eV Core-core repulsion = 18213.539155 eV Total energy + Delta-G solvation = -3177.287036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98489 -39.24877 -38.14102 -35.93952 -34.18807 -33.68314 -31.89572 -31.60602 -28.86399 -27.62341 -26.59406 -24.38621 -24.06203 -22.65395 -21.61790 -21.05911 -19.22222 -18.45996 -17.88831 -17.36624 -16.66923 -16.62310 -16.17856 -15.74763 -15.48063 -15.34113 -14.95579 -14.66390 -14.60524 -14.34075 -14.04862 -13.68166 -13.57542 -13.41588 -13.10085 -12.98367 -12.95750 -12.84110 -12.55045 -12.18684 -12.13572 -11.99990 -11.71407 -11.66602 -11.65002 -11.32283 -11.09262 -10.96940 -10.91299 -10.06432 -9.63773 -9.00793 -7.96872 -5.25175 1.27873 1.47123 1.47417 1.57794 1.69922 2.35064 2.56519 3.36872 3.67430 3.72788 3.82215 3.95369 3.99490 4.07397 4.10480 4.29573 4.33804 4.38525 4.49016 4.54069 4.58996 4.69231 4.71918 4.74502 4.78055 4.79926 4.92871 5.01163 5.04501 5.04913 5.10964 5.11765 5.20314 5.33486 5.33950 5.42430 5.47955 5.48970 5.50445 5.77239 6.12747 6.26146 6.61000 7.30947 7.32889 8.07677 8.32354 9.26733 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.051388 B = 0.002357 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.743361 B =11875.051916 C =11977.527300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.073 0.927 8 C -0.075 4.075 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.717 5.717 16 C 0.509 3.491 17 O -0.582 6.582 18 C -0.105 4.105 19 C -0.114 4.114 20 C -0.157 4.157 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.081 4.081 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.377 0.623 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.415 0.585 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -0.998 28.121 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.014 3.986 15 N -0.370 5.370 16 C 0.297 3.703 17 O -0.462 6.462 18 C -0.144 4.144 19 C -0.114 4.114 20 C -0.176 4.176 21 C -0.128 4.128 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.117 4.117 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.210 0.790 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.256 -1.862 28.074 28.137 hybrid contribution -0.037 0.362 -1.611 1.652 sum 0.219 -1.500 26.463 26.506 Atomic orbital electron populations 1.21721 0.93780 1.01869 1.01833 1.21325 0.97225 1.00005 0.92693 0.90302 1.20729 0.96441 0.94144 0.85788 1.42515 1.66808 1.27804 1.01331 1.19658 1.27825 1.05243 0.85063 0.90926 1.25553 1.01717 0.97923 1.01540 1.69808 1.45092 1.17836 1.29070 0.85074 0.77116 0.77598 0.79977 1.19288 1.21891 1.21923 1.21071 0.99191 0.95003 0.83296 1.45971 1.57738 1.28197 1.05108 1.21234 0.78419 0.85395 0.85247 1.90696 1.41597 1.26574 1.87295 1.20916 1.04886 0.99606 0.88987 1.20482 0.97192 0.98059 0.95706 1.22081 0.95725 1.01045 0.98700 1.20461 0.98074 0.99469 0.94800 1.21597 0.98016 0.98315 0.97424 1.21587 0.99020 0.97871 0.97350 1.20363 0.97812 0.95124 0.98445 0.90339 0.93907 0.93109 0.96424 0.96201 0.79040 0.93929 0.92644 0.92183 0.74816 0.86313 0.85886 0.87975 0.89785 0.91819 0.90935 0.90805 0.90617 0.93676 0.89376 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.94 71.98 0.64 -3.14 16 2 C -0.09 -2.80 2.46 -10.80 -0.03 -2.82 16 3 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.16 6.24 5.65 86.38 0.49 6.73 16 5 N -0.74 -37.56 5.33 -343.44 -1.83 -39.40 16 6 C -0.25 -13.88 9.99 84.03 0.84 -13.05 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 9 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 10 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 14 C 0.14 3.75 5.06 86.38 0.44 4.18 16 15 N -0.72 -15.16 5.28 -463.06 -2.45 -17.60 16 16 C 0.51 11.92 7.82 87.66 0.69 12.61 16 17 O -0.58 -19.13 16.03 -3.03 -0.05 -19.18 16 18 C -0.10 -1.59 5.71 29.10 0.17 -1.42 16 19 C -0.11 -2.05 4.33 -15.10 -0.07 -2.12 16 20 C -0.16 -2.80 9.37 27.04 0.25 -2.54 16 21 C -0.09 -1.37 6.11 29.66 0.18 -1.19 16 22 C -0.12 -1.53 6.01 30.74 0.18 -1.34 16 23 C -0.12 -1.95 6.01 30.73 0.18 -1.76 16 24 C -0.08 -1.36 5.80 29.66 0.17 -1.19 16 25 H 0.08 1.63 7.18 -2.39 -0.02 1.61 16 26 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 27 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.38 19.93 6.85 -92.71 -0.64 19.29 16 31 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 6.31 7.65 -92.71 -0.71 5.60 16 35 H 0.12 1.30 7.80 -2.39 -0.02 1.28 16 36 H 0.12 1.26 8.11 -2.39 -0.02 1.24 16 37 H 0.10 1.71 7.74 -2.91 -0.02 1.69 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -70.75 361.96 2.21 -68.54 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.38 Total: 28.71 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.61 Total: -10.91 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -3.99 Total: -115.60 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.05 Total: -19.18 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -70.75 2.21 -68.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666526426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.790 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds