Wall clock time and date at job start Fri Apr 10 2020 17:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 C 1.50708 * 109.46791 * 180.02562 * 18 16 15 20 20 C 1.29440 * 117.95897 * 94.73853 * 19 18 16 21 21 C 1.50065 * 124.07400 * 180.23545 * 20 19 18 22 22 C 1.53023 * 110.20158 * 343.31928 * 21 20 19 23 23 C 1.53392 * 108.43965 * 49.24767 * 22 21 20 24 24 C 1.50067 * 117.96187 * 275.00298 * 19 18 16 25 25 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 27 27 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 28 28 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 29 29 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 30 30 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 31 31 H 0.97000 * 120.00663 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 33 33 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 34 34 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 35 35 H 1.08996 * 109.47454 * 299.99873 * 18 16 15 36 36 H 1.09005 * 109.47136 * 60.00629 * 18 16 15 37 37 H 1.08002 * 117.96392 * 0.46434 * 20 19 18 38 38 H 1.08998 * 109.48696 * 222.99550 * 21 20 19 39 39 H 1.09002 * 109.17880 * 103.44458 * 21 20 19 40 40 H 1.09002 * 109.64340 * 289.56233 * 22 21 20 41 41 H 1.09004 * 109.81833 * 169.03760 * 22 21 20 42 42 H 1.09002 * 109.64099 * 172.88235 * 23 22 21 43 43 H 1.09002 * 109.64498 * 52.25091 * 23 22 21 44 44 H 1.09007 * 109.35809 * 283.04986 * 24 19 18 45 45 H 1.08998 * 109.35871 * 42.77682 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 1.9758 -0.1383 6.0106 10 14 0.6758 1.8900 4.6408 11 1 -0.7790 1.5929 4.6677 12 1 1.0158 2.8009 5.7634 13 1 1.0243 2.5409 3.3524 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5982 0.3656 -4.8932 19 6 2.1005 -0.3449 -6.1237 20 6 1.2913 -1.1523 -6.7311 21 6 1.6488 -1.9324 -7.9621 22 6 2.9014 -1.3442 -8.6153 23 6 3.9746 -1.1664 -7.5338 24 6 3.5096 -0.0770 -6.5651 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1262 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2951 30 1 1.1482 0.8590 2.3517 31 1 1.7229 0.3649 6.8004 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 1.1489 0.8595 -2.3517 35 1 0.5120 0.4439 -4.9372 36 1 2.0330 1.3641 -4.8469 37 1 0.2958 -1.2690 -6.3289 38 1 0.8207 -1.8947 -8.6698 39 1 1.8385 -2.9697 -7.6861 40 1 2.6638 -0.3770 -9.0583 41 1 3.2679 -2.0206 -9.3875 42 1 4.9152 -0.8679 -7.9967 43 1 4.1096 -2.1036 -6.9939 44 1 3.5543 0.8919 -7.0625 45 1 4.1651 -0.0667 -5.6943 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666526427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:06 Heat of formation + Delta-G solvation = -38.887026 kcal Electronic energy + Delta-G solvation = -21461.049747 eV Core-core repulsion = 18284.840842 eV Total energy + Delta-G solvation = -3176.208905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09605 -38.51025 -36.92604 -34.46999 -33.19155 -32.42496 -30.98506 -30.55889 -28.07432 -26.47828 -25.21812 -23.50522 -22.31891 -21.75754 -20.62902 -19.98997 -17.81566 -17.70927 -16.91120 -16.40146 -15.77636 -15.44029 -14.82055 -14.63059 -14.44169 -14.04487 -13.90249 -13.65942 -13.63196 -13.15119 -12.88157 -12.64357 -12.49448 -12.46420 -12.37048 -12.20382 -11.87807 -11.45945 -11.06009 -11.03919 -10.79291 -10.71470 -10.63130 -10.60258 -10.47726 -10.14993 -9.92675 -9.59329 -9.07591 -8.96278 -8.91265 -7.24547 -5.77649 -3.13367 1.96947 2.59804 3.24302 3.34705 3.36745 3.43115 4.31171 4.43217 4.57305 4.66565 4.75017 4.86115 4.90949 4.98065 5.08106 5.09789 5.17911 5.22839 5.31823 5.33870 5.37205 5.52650 5.57147 5.65418 5.67247 5.71178 5.72560 5.81861 5.86941 5.89522 5.92899 6.08000 6.09271 6.22411 6.40823 6.41204 6.44197 6.64598 6.74107 6.78101 7.44461 7.98693 8.18373 8.41209 9.20040 9.92113 10.11881 11.40805 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046838 B = 0.002518 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.656258 B =11115.487138 C =11281.389363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.127 3.873 15 N -0.729 5.729 16 C 0.511 3.489 17 O -0.534 6.534 18 C -0.111 4.111 19 C -0.099 4.099 20 C -0.148 4.148 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.079 4.079 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.360 0.640 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 2.345 -29.970 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.381 5.381 16 C 0.297 3.703 17 O -0.410 6.410 18 C -0.151 4.151 19 C -0.100 4.100 20 C -0.166 4.166 21 C -0.125 4.125 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.116 4.116 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.194 0.806 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.233 0.767 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.319 1.439 -29.845 29.909 hybrid contribution -1.046 1.612 0.313 1.946 sum -2.365 3.051 -29.532 29.783 Atomic orbital electron populations 1.21808 0.94796 1.02252 1.01164 1.21605 0.96604 1.00532 0.94634 0.90631 1.20553 0.97198 0.94245 0.84313 1.42688 1.67864 1.27112 1.02363 1.19068 1.29595 1.06950 0.81735 0.89172 1.24681 1.00858 0.98611 0.95116 1.69697 1.51353 1.40206 0.96939 0.86544 0.80384 0.84675 0.76891 1.21066 1.21705 1.20408 1.21370 1.00213 0.95276 0.82795 1.46108 1.58070 1.27934 1.06032 1.20572 0.79558 0.85858 0.84337 1.90716 1.39379 1.24278 1.86635 1.20871 1.02686 0.99939 0.91605 1.20269 0.95884 0.98820 0.95009 1.21852 0.99395 0.97629 0.97727 1.20398 0.97735 0.99235 0.95086 1.21601 0.95481 1.01020 0.97645 1.21579 0.97909 0.99542 0.96623 1.20340 0.93343 0.98651 0.99308 0.92375 0.91886 0.93644 0.95287 0.95116 0.80648 0.93048 0.91278 0.91281 0.76678 0.88552 0.88430 0.88176 0.91292 0.90880 0.91909 0.91848 0.91826 0.91403 0.91228 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.94 37.16 0.33 -1.57 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 5 N -0.75 -17.74 5.13 -59.91 -0.31 -18.04 16 6 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 7 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 8 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 10 Si 0.88 21.96 27.73 -169.99 -4.71 17.24 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 N -0.73 -7.84 5.28 -60.30 -0.32 -8.16 16 16 C 0.51 6.05 7.82 -10.99 -0.09 5.96 16 17 O -0.53 -8.54 16.03 5.56 0.09 -8.45 16 18 C -0.11 -0.92 5.71 -29.03 -0.17 -1.09 16 19 C -0.10 -0.93 4.33 -100.94 -0.44 -1.37 16 20 C -0.15 -1.35 9.37 -35.90 -0.34 -1.69 16 21 C -0.09 -0.68 6.11 -28.18 -0.17 -0.86 16 22 C -0.12 -0.86 6.01 -26.52 -0.16 -1.02 16 23 C -0.12 -0.98 6.01 -26.52 -0.16 -1.14 16 24 C -0.08 -0.70 5.80 -28.18 -0.16 -0.86 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.95 7.18 -51.93 -0.37 0.58 16 27 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.36 8.18 4.71 -40.82 -0.19 7.98 16 31 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.28 7.66 -40.82 -0.31 2.96 16 35 H 0.10 0.63 7.80 -51.93 -0.40 0.22 16 36 H 0.10 0.63 8.12 -51.93 -0.42 0.20 16 37 H 0.10 0.86 7.74 -52.49 -0.41 0.46 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -33.66 358.85 -8.93 -42.58 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.99 Total: 5.96 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.87 Total: -7.84 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.15 Total: -54.90 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.66 -8.93 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666526427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.697 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds