Wall clock time and date at job start Fri Apr 10 2020 17:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47278 * 239.99897 * 2 1 3 5 5 N 1.46494 * 109.47099 * 184.99825 * 4 2 1 6 6 C 1.36943 * 119.99960 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00031 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99951 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00061 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47138 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47328 * 119.99887 * 10 8 6 13 13 H 1.48497 * 109.47192 * 240.00118 * 10 8 6 14 14 N 1.46501 * 109.47293 * 119.99737 * 2 1 3 15 15 C 1.46506 * 119.99980 * 64.20100 * 14 2 1 16 16 C 1.34769 * 120.00142 * 244.20823 * 14 2 1 17 17 O 1.21286 * 120.00439 * 185.06637 * 16 14 2 18 18 C 1.50700 * 120.00182 * 5.06159 * 16 14 2 19 19 C 1.52999 * 109.64065 * 293.12308 * 18 16 14 20 20 C 1.53023 * 109.64658 * 172.70575 * 18 16 14 21 21 C 1.50548 * 109.88917 * 289.58397 * 20 18 16 22 22 C 1.29445 * 124.15752 * 342.99435 * 21 20 18 23 23 C 1.50070 * 124.07591 * 0.41411 * 22 21 20 24 24 C 1.53020 * 110.14660 * 342.87042 * 23 22 21 25 25 H 1.09002 * 109.47268 * 60.00296 * 1 2 3 26 26 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47348 * 299.99939 * 1 2 3 28 28 H 1.09000 * 109.47075 * 64.99859 * 4 2 1 29 29 H 1.09000 * 109.46850 * 305.00032 * 4 2 1 30 30 H 0.96997 * 120.00359 * 0.02562 * 5 4 2 31 31 H 0.96996 * 120.00248 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46391 * 95.14152 * 15 14 2 33 33 H 1.08997 * 109.47305 * 215.14253 * 15 14 2 34 34 H 1.08996 * 109.46994 * 335.14760 * 15 14 2 35 35 H 1.09002 * 109.46721 * 63.75246 * 19 18 16 36 36 H 1.08998 * 109.47088 * 183.74840 * 19 18 16 37 37 H 1.08999 * 109.47272 * 303.75245 * 19 18 16 38 38 H 1.09004 * 109.35820 * 49.95737 * 20 18 16 39 39 H 1.08998 * 109.36133 * 169.54515 * 20 18 16 40 40 H 1.07997 * 117.88557 * 162.91623 * 21 20 18 41 41 H 1.08000 * 117.96602 * 180.43595 * 22 21 20 42 42 H 1.09004 * 109.36182 * 222.66025 * 23 22 21 43 43 H 1.08998 * 109.24732 * 103.00664 * 23 22 21 44 44 H 1.09006 * 109.64405 * 289.74848 * 24 23 22 45 45 H 1.08996 * 109.64123 * 169.12195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1838 -1.4388 -2.2067 7 1 3.6468 -1.8440 -3.0515 8 6 5.5672 -1.5389 -2.1508 9 7 6.2217 -1.0446 -1.1215 10 14 6.5000 -2.3737 -3.5373 11 1 5.5396 -2.8402 -4.5694 12 1 7.4510 -1.4088 -4.1455 13 1 7.2508 -3.5363 -2.9990 14 7 2.0184 -0.6906 1.1962 15 6 1.7420 -2.1172 1.3826 16 6 2.7218 -0.0135 2.1252 17 8 3.2045 -0.6027 3.0690 18 6 2.9087 1.4759 1.9913 19 6 3.7827 1.7770 0.7722 20 6 3.5783 2.0258 3.2526 21 6 2.6152 1.9726 4.4085 22 6 1.3349 1.8300 4.2818 23 6 0.6310 1.6885 2.9640 24 6 1.5428 2.1542 1.8267 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7516 -0.1583 -2.1369 29 1 1.6054 -1.7198 -1.2951 30 1 3.9823 -0.4627 -0.4316 31 1 7.1884 -1.1148 -1.0822 32 1 2.5878 -2.7014 1.0201 33 1 1.5863 -2.3217 2.4418 34 1 0.8463 -2.3897 0.8244 35 1 3.2695 1.4505 -0.1323 36 1 3.9712 2.8491 0.7161 37 1 4.7301 1.2458 0.8642 38 1 4.4603 1.4283 3.4832 39 1 3.8793 3.0592 3.0807 40 1 3.0188 2.0577 5.4066 41 1 0.7359 1.8120 5.1803 42 1 -0.2753 2.2942 2.9715 43 1 0.3653 0.6429 2.8089 44 1 1.6632 3.2366 1.8734 45 1 1.1066 1.8720 0.8685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666908484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:17 Heat of formation + Delta-G solvation = 7.341615 kcal Electronic energy + Delta-G solvation = -24429.907317 eV Core-core repulsion = 21255.703037 eV Total energy + Delta-G solvation = -3174.204280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92703 -37.33138 -36.59381 -33.88735 -32.81707 -31.45533 -30.82167 -29.87368 -26.95101 -26.30264 -25.60380 -23.21397 -22.82836 -22.35962 -20.52155 -19.24436 -17.61675 -17.09873 -16.07001 -16.02653 -15.05255 -15.01526 -14.60734 -14.29784 -13.82661 -13.74347 -13.52160 -13.25018 -12.78408 -12.56026 -12.45712 -12.35218 -12.18859 -11.94818 -11.74686 -11.67619 -11.65257 -11.60852 -11.24568 -11.15469 -10.86136 -10.75341 -10.55892 -10.19737 -10.04614 -9.72511 -9.63334 -9.06057 -8.87955 -8.80657 -8.11286 -6.91487 -5.75161 -3.04226 2.49808 3.18940 3.43271 3.47369 3.49305 3.51479 4.58043 4.65410 4.74389 4.82563 5.05846 5.19527 5.29508 5.34223 5.42229 5.44048 5.50767 5.58413 5.63879 5.73393 5.78295 5.81700 5.93663 5.94254 5.96872 6.00898 6.06267 6.10331 6.17215 6.23542 6.32119 6.36470 6.39883 6.42473 6.52450 6.66877 6.73866 6.85685 7.04485 7.12856 7.70768 7.90448 8.43117 8.72421 9.55004 10.12016 10.47499 11.47109 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.005875 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.148014 B = 4765.194407 C = 5233.433142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 H 0.118 0.882 4 C 0.140 3.860 5 N -0.729 5.729 6 C -0.242 4.242 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.594 5.594 15 C 0.093 3.907 16 C 0.534 3.466 17 O -0.542 6.542 18 C -0.078 4.078 19 C -0.158 4.158 20 C -0.069 4.069 21 C -0.131 4.131 22 C -0.170 4.170 23 C -0.092 4.092 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.022 0.978 30 H 0.388 0.612 31 H 0.254 0.746 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 7.744 6.726 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.007 4.007 3 H 0.135 0.865 4 C 0.011 3.989 5 N -0.375 5.375 6 C -0.373 4.373 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.327 5.327 15 C -0.050 4.050 16 C 0.322 3.678 17 O -0.419 6.419 18 C -0.081 4.081 19 C -0.215 4.215 20 C -0.107 4.107 21 C -0.150 4.150 22 C -0.188 4.188 23 C -0.128 4.128 24 C -0.164 4.164 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.223 0.777 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.612 7.319 7.082 16.211 hybrid contribution 0.755 -0.555 -0.518 1.071 sum -11.857 6.763 6.564 15.147 Atomic orbital electron populations 1.22268 0.95452 1.02645 1.02250 1.22209 0.93797 0.98992 0.85700 0.86488 1.21045 0.87276 0.97153 0.93437 1.42410 0.99573 1.70304 1.25205 1.19239 0.89377 1.29650 0.99020 0.91246 1.24729 0.96461 1.01609 0.97965 1.69666 1.07150 1.50755 1.30075 0.86148 0.79931 0.78825 0.81435 1.20643 1.21904 1.21955 1.47591 1.54488 1.09841 1.20730 1.21477 1.01035 0.81382 1.01110 1.20241 0.77050 0.88953 0.81533 1.90637 1.48010 1.70321 1.32895 1.20840 0.97096 0.92245 0.97917 1.22233 1.01067 1.02102 0.96074 1.20445 0.98128 1.00793 0.91289 1.22044 0.94697 0.99385 0.98825 1.21877 0.95863 1.03277 0.97804 1.20481 0.98022 1.01598 0.92748 1.22182 0.93971 1.00601 0.99692 0.91344 0.92131 0.91963 0.95343 0.96055 0.77674 0.93567 0.92097 0.92010 0.91741 0.89971 0.91958 0.90367 0.89720 0.90400 0.88251 0.88491 0.91212 0.90891 0.90877 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.50 37.16 0.32 -1.61 16 2 C 0.10 1.47 1.31 -67.93 -0.09 1.38 16 3 H 0.12 1.75 2.18 -51.93 -0.11 1.63 16 4 C 0.14 2.65 5.39 -4.05 -0.02 2.63 16 5 N -0.73 -17.85 5.06 -59.91 -0.30 -18.15 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 N -0.59 -10.18 2.05 -173.93 -0.36 -10.54 16 15 C 0.09 1.56 9.34 59.85 0.56 2.12 16 16 C 0.53 9.91 4.66 -10.99 -0.05 9.86 16 17 O -0.54 -11.90 15.07 5.55 0.08 -11.82 16 18 C -0.08 -1.20 0.50 -155.45 -0.08 -1.28 16 19 C -0.16 -2.62 7.19 37.16 0.27 -2.36 16 20 C -0.07 -1.02 4.58 -27.94 -0.13 -1.15 16 21 C -0.13 -1.81 9.12 -35.67 -0.33 -2.14 16 22 C -0.17 -2.19 9.61 -35.90 -0.35 -2.54 16 23 C -0.09 -1.09 4.84 -28.18 -0.14 -1.23 16 24 C -0.13 -1.56 4.33 -26.52 -0.11 -1.68 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.68 6.85 -51.93 -0.36 0.33 16 27 H 0.06 0.65 5.58 -51.93 -0.29 0.36 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.42 7.67 -51.93 -0.40 0.02 16 30 H 0.39 9.97 5.36 -40.82 -0.22 9.75 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.01 7.66 -51.93 -0.40 0.62 16 34 H 0.06 0.90 6.56 -51.93 -0.34 0.56 16 35 H 0.08 1.44 4.03 -51.93 -0.21 1.23 16 36 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.08 1.58 7.96 -51.93 -0.41 1.17 16 38 H 0.08 1.42 7.66 -51.93 -0.40 1.02 16 39 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.10 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 44 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 45 H 0.09 1.02 3.51 -51.93 -0.18 0.84 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -32.43 331.54 -7.27 -39.69 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.99 Total: 10.88 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.39 Total: -5.21 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.07 Total: -55.94 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.43 -7.27 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666908484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.033 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds