Wall clock time and date at job start Fri Apr 10 2020 17:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47278 * 239.99897 * 2 1 3 5 5 N 1.46494 * 109.47099 * 184.99825 * 4 2 1 6 6 C 1.36943 * 119.99960 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00031 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99951 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00061 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47138 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47328 * 119.99887 * 10 8 6 13 13 H 1.48497 * 109.47192 * 240.00118 * 10 8 6 14 14 N 1.46501 * 109.47293 * 119.99737 * 2 1 3 15 15 C 1.46506 * 119.99980 * 64.20100 * 14 2 1 16 16 C 1.34769 * 120.00142 * 244.20823 * 14 2 1 17 17 O 1.21286 * 120.00439 * 185.06637 * 16 14 2 18 18 C 1.50700 * 120.00182 * 5.06159 * 16 14 2 19 19 C 1.52999 * 109.64065 * 293.12308 * 18 16 14 20 20 C 1.53023 * 109.64658 * 172.70575 * 18 16 14 21 21 C 1.50548 * 109.88917 * 289.58397 * 20 18 16 22 22 C 1.29445 * 124.15752 * 342.99435 * 21 20 18 23 23 C 1.50070 * 124.07591 * 0.41411 * 22 21 20 24 24 C 1.53020 * 110.14660 * 342.87042 * 23 22 21 25 25 H 1.09002 * 109.47268 * 60.00296 * 1 2 3 26 26 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47348 * 299.99939 * 1 2 3 28 28 H 1.09000 * 109.47075 * 64.99859 * 4 2 1 29 29 H 1.09000 * 109.46850 * 305.00032 * 4 2 1 30 30 H 0.96997 * 120.00359 * 0.02562 * 5 4 2 31 31 H 0.96996 * 120.00248 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46391 * 95.14152 * 15 14 2 33 33 H 1.08997 * 109.47305 * 215.14253 * 15 14 2 34 34 H 1.08996 * 109.46994 * 335.14760 * 15 14 2 35 35 H 1.09002 * 109.46721 * 63.75246 * 19 18 16 36 36 H 1.08998 * 109.47088 * 183.74840 * 19 18 16 37 37 H 1.08999 * 109.47272 * 303.75245 * 19 18 16 38 38 H 1.09004 * 109.35820 * 49.95737 * 20 18 16 39 39 H 1.08998 * 109.36133 * 169.54515 * 20 18 16 40 40 H 1.07997 * 117.88557 * 162.91623 * 21 20 18 41 41 H 1.08000 * 117.96602 * 180.43595 * 22 21 20 42 42 H 1.09004 * 109.36182 * 222.66025 * 23 22 21 43 43 H 1.08998 * 109.24732 * 103.00664 * 23 22 21 44 44 H 1.09006 * 109.64405 * 289.74848 * 24 23 22 45 45 H 1.08996 * 109.64123 * 169.12195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1838 -1.4388 -2.2067 7 1 3.6468 -1.8440 -3.0515 8 6 5.5672 -1.5389 -2.1508 9 7 6.2217 -1.0446 -1.1215 10 14 6.5000 -2.3737 -3.5373 11 1 5.5396 -2.8402 -4.5694 12 1 7.4510 -1.4088 -4.1455 13 1 7.2508 -3.5363 -2.9990 14 7 2.0184 -0.6906 1.1962 15 6 1.7420 -2.1172 1.3826 16 6 2.7218 -0.0135 2.1252 17 8 3.2045 -0.6027 3.0690 18 6 2.9087 1.4759 1.9913 19 6 3.7827 1.7770 0.7722 20 6 3.5783 2.0258 3.2526 21 6 2.6152 1.9726 4.4085 22 6 1.3349 1.8300 4.2818 23 6 0.6310 1.6885 2.9640 24 6 1.5428 2.1542 1.8267 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7516 -0.1583 -2.1369 29 1 1.6054 -1.7198 -1.2951 30 1 3.9823 -0.4627 -0.4316 31 1 7.1884 -1.1148 -1.0822 32 1 2.5878 -2.7014 1.0201 33 1 1.5863 -2.3217 2.4418 34 1 0.8463 -2.3897 0.8244 35 1 3.2695 1.4505 -0.1323 36 1 3.9712 2.8491 0.7161 37 1 4.7301 1.2458 0.8642 38 1 4.4603 1.4283 3.4832 39 1 3.8793 3.0592 3.0807 40 1 3.0188 2.0577 5.4066 41 1 0.7359 1.8120 5.1803 42 1 -0.2753 2.2942 2.9715 43 1 0.3653 0.6429 2.8089 44 1 1.6632 3.2366 1.8734 45 1 1.1066 1.8720 0.8685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666908484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:17 Heat of formation + Delta-G solvation = -12.737811 kcal Electronic energy + Delta-G solvation = -24430.778027 eV Core-core repulsion = 21255.703037 eV Total energy + Delta-G solvation = -3175.074990 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21370 -38.56019 -38.07007 -35.76683 -33.97949 -33.17908 -32.01551 -31.28554 -28.24701 -27.66273 -27.20493 -24.60023 -24.12271 -23.83235 -21.85961 -20.49820 -19.17358 -18.72863 -17.47884 -17.17201 -16.66290 -16.39648 -16.11708 -15.60905 -15.30985 -15.25033 -14.90609 -14.71295 -14.10907 -13.94181 -13.74958 -13.55189 -13.44031 -13.23924 -13.11358 -12.97913 -12.88188 -12.83794 -12.77448 -12.77252 -12.32187 -12.27385 -12.04194 -11.73099 -11.71284 -11.31720 -11.00871 -10.78350 -10.44214 -9.83675 -9.52473 -8.95190 -7.92396 -5.20317 1.45711 1.46726 1.48660 1.56309 1.75393 2.15063 2.56394 3.40508 3.44363 3.62561 3.76323 3.81067 4.06230 4.09957 4.21886 4.26620 4.37364 4.44984 4.48947 4.50392 4.57669 4.66516 4.74741 4.79661 4.85282 4.85885 4.88504 4.94105 4.96044 5.02173 5.02785 5.09427 5.17220 5.25412 5.31969 5.38277 5.44577 5.51280 5.69985 5.80798 6.11514 6.28913 6.53245 7.30241 7.36703 8.15351 8.37390 9.30483 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.005875 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.148014 B = 4765.194407 C = 5233.433142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 H 0.124 0.876 4 C 0.133 3.867 5 N -0.743 5.743 6 C -0.239 4.239 7 H 0.077 0.923 8 C -0.076 4.076 9 N -0.967 5.967 10 Si 0.969 3.031 11 H -0.264 1.264 12 H -0.294 1.294 13 H -0.301 1.301 14 N -0.594 5.594 15 C 0.095 3.905 16 C 0.525 3.475 17 O -0.588 6.588 18 C -0.074 4.074 19 C -0.149 4.149 20 C -0.070 4.070 21 C -0.153 4.153 22 C -0.166 4.166 23 C -0.092 4.092 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.379 0.621 31 H 0.247 0.753 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.050 0.950 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 9.119 5.826 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.003 4.003 3 H 0.141 0.859 4 C 0.006 3.994 5 N -0.387 5.387 6 C -0.371 4.371 7 H 0.095 0.905 8 C -0.268 4.268 9 N -0.618 5.618 10 Si 0.799 3.201 11 H -0.188 1.188 12 H -0.221 1.221 13 H -0.229 1.229 14 N -0.325 5.325 15 C -0.048 4.048 16 C 0.314 3.686 17 O -0.468 6.468 18 C -0.077 4.077 19 C -0.206 4.206 20 C -0.107 4.107 21 C -0.171 4.171 22 C -0.184 4.184 23 C -0.129 4.129 24 C -0.158 4.158 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.212 0.788 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.713 8.696 6.135 18.978 hybrid contribution 1.643 -1.019 -0.247 1.949 sum -14.070 7.677 5.888 17.075 Atomic orbital electron populations 1.22240 0.91590 1.03678 1.04318 1.22335 0.96585 0.98316 0.83034 0.85882 1.21313 0.84174 0.97875 0.96058 1.42645 1.01994 1.69877 1.24216 1.19664 0.89773 1.28186 0.99474 0.90500 1.25517 0.97644 1.03302 1.00370 1.69845 1.06751 1.52948 1.32227 0.85128 0.78612 0.77281 0.79059 1.18821 1.22078 1.22877 1.47739 1.53924 1.09882 1.20935 1.21441 1.00711 0.81131 1.01497 1.20914 0.76189 0.90400 0.81068 1.90605 1.49738 1.71509 1.34939 1.20860 0.99124 0.90350 0.97412 1.22131 0.98834 1.03240 0.96388 1.20421 0.97248 1.01308 0.91697 1.22087 0.95142 1.01235 0.98650 1.22167 0.95659 1.01425 0.99161 1.20551 0.99002 1.01561 0.91765 1.22206 0.91579 1.01588 1.00447 0.88925 0.91697 0.90225 0.93806 0.95972 0.78755 0.94402 0.96032 0.92023 0.88456 0.90748 0.89013 0.95173 0.93180 0.88204 0.87782 0.86883 0.87876 0.91947 0.88549 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.50 71.98 0.61 -2.38 16 2 C 0.10 2.83 1.31 44.99 0.06 2.88 16 3 H 0.12 3.38 2.18 -2.39 -0.01 3.38 16 4 C 0.13 4.85 5.39 86.38 0.47 5.32 16 5 N -0.74 -36.62 5.06 -343.46 -1.74 -38.36 16 6 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 7 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 8 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 9 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 10 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 14 N -0.59 -20.07 2.05 -822.59 -1.68 -21.75 16 15 C 0.10 3.21 9.34 127.77 1.19 4.40 16 16 C 0.52 19.73 4.66 87.66 0.41 20.14 16 17 O -0.59 -27.00 15.07 -3.05 -0.05 -27.05 16 18 C -0.07 -2.25 0.50 -52.79 -0.03 -2.27 16 19 C -0.15 -4.97 7.19 71.98 0.52 -4.46 16 20 C -0.07 -2.05 4.58 29.81 0.14 -1.92 16 21 C -0.15 -4.09 9.12 27.19 0.25 -3.85 16 22 C -0.17 -3.89 9.61 27.04 0.26 -3.63 16 23 C -0.09 -1.86 4.84 29.66 0.14 -1.72 16 24 C -0.12 -2.57 4.33 30.73 0.13 -2.44 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.19 6.85 -2.38 -0.02 1.17 16 27 H 0.08 1.27 5.58 -2.39 -0.01 1.26 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.02 0.82 7.67 -2.39 -0.02 0.80 16 30 H 0.38 20.05 5.36 -92.71 -0.50 19.55 16 31 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 2.06 7.66 -2.39 -0.02 2.04 16 34 H 0.10 2.56 6.56 -2.39 -0.02 2.55 16 35 H 0.07 2.58 4.03 -2.39 -0.01 2.57 16 36 H 0.09 2.44 8.12 -2.39 -0.02 2.42 16 37 H 0.03 1.27 7.96 -2.39 -0.02 1.26 16 38 H 0.05 1.80 7.66 -2.38 -0.02 1.78 16 39 H 0.10 2.40 8.09 -2.39 -0.02 2.38 16 40 H 0.10 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.11 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.06 1.44 6.38 -2.39 -0.02 1.42 16 44 H 0.10 1.66 8.13 -2.38 -0.02 1.64 16 45 H 0.10 1.88 3.51 -2.39 -0.01 1.88 16 Total: -1.00 -73.73 331.54 4.79 -68.94 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.49 Total: 35.73 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.46 Total: -6.20 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -3.14 Total: -120.24 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -73.73 4.79 -68.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666908484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.204 kcal (2) G-P(sol) polarization free energy of solvation -73.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds