Wall clock time and date at job start Fri Apr 10 2020 17:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47257 * 2 1 4 4 C 1.53002 * 109.47323 * 239.99911 * 2 1 3 5 5 N 1.46493 * 109.47522 * 184.99849 * 4 2 1 6 6 C 1.36936 * 120.00592 * 179.72695 * 5 4 2 7 7 H 1.07999 * 119.99197 * 0.26952 * 6 5 4 8 8 C 1.38810 * 120.00478 * 180.27941 * 6 5 4 9 9 N 1.31615 * 119.99774 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00110 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47153 * 59.99208 * 10 8 6 12 12 H 1.48493 * 109.47154 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46864 * 299.99734 * 10 8 6 14 14 N 1.46503 * 109.47278 * 119.99884 * 2 1 3 15 15 C 1.46495 * 119.99834 * 60.00096 * 14 2 1 16 16 C 1.34771 * 119.99765 * 240.00058 * 14 2 1 17 17 O 1.21283 * 120.00504 * 355.70245 * 16 14 2 18 18 C 1.50710 * 119.99741 * 175.70286 * 16 14 2 19 19 C 1.55924 * 115.92197 * 291.88458 * 18 16 14 20 20 C 1.58475 * 103.90457 * 199.42622 * 19 18 16 21 21 C 1.55924 * 103.90650 * 0.02562 * 20 19 18 22 22 C 1.55923 * 104.50099 * 289.45194 * 21 20 19 23 23 C 1.54584 * 104.64586 * 71.08452 * 22 21 20 24 24 C 1.56952 * 101.41177 * 33.74796 * 21 20 19 25 25 H 1.09001 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46996 * 299.99954 * 1 2 3 27 27 H 1.08998 * 109.47262 * 60.00362 * 1 2 3 28 28 H 1.09007 * 109.47010 * 64.99767 * 4 2 1 29 29 H 1.09003 * 109.46913 * 305.00266 * 4 2 1 30 30 H 0.97009 * 119.99819 * 0.02562 * 5 4 2 31 31 H 0.97005 * 120.00000 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47295 * 95.20131 * 15 14 2 33 33 H 1.09005 * 109.47302 * 215.20011 * 15 14 2 34 34 H 1.09004 * 109.47620 * 335.20069 * 15 14 2 35 35 H 1.08993 * 110.40152 * 318.75893 * 19 18 16 36 36 H 1.09001 * 110.39877 * 81.17476 * 19 18 16 37 37 H 1.08997 * 110.98594 * 241.33794 * 20 19 18 38 38 H 1.09003 * 110.62288 * 118.48587 * 20 19 18 39 39 H 1.08998 * 115.92203 * 160.57075 * 21 20 19 40 40 H 1.09006 * 110.39839 * 312.29742 * 22 21 20 41 41 H 1.09000 * 110.50493 * 189.92985 * 22 21 20 42 42 H 1.08999 * 110.40356 * 241.21597 * 23 22 21 43 43 H 1.08998 * 110.50255 * 118.84238 * 23 22 21 44 44 H 1.09002 * 112.02745 * 189.49939 * 24 21 20 45 45 H 1.09002 * 112.02623 * 62.97211 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1834 -1.4433 -2.2043 7 1 3.6463 -1.8485 -3.0491 8 6 5.5663 -1.5480 -2.1459 9 7 6.2208 -1.0539 -1.1165 10 14 6.4984 -2.3903 -3.5284 11 1 6.2463 -1.6732 -4.8041 12 1 7.9527 -2.3704 -3.2289 13 1 6.0370 -3.7965 -3.6516 14 7 2.0183 -0.6906 1.1962 15 6 1.6645 -2.0931 1.4280 16 6 2.7932 -0.0355 2.0833 17 8 3.1506 1.1004 1.8537 18 6 3.2155 -0.7147 3.3606 19 6 2.0794 -0.9962 4.3908 20 6 2.8501 -1.2079 5.7593 21 6 4.3506 -1.0259 5.3764 22 6 4.6939 -2.2902 4.5310 23 6 3.9422 -2.0838 3.1961 24 6 4.2535 0.0602 4.2475 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7516 -0.1583 -2.1370 29 1 1.6054 -1.7198 -1.2951 30 1 3.9824 -0.4627 -0.4316 31 1 7.1873 -1.1267 -1.0759 32 1 2.4612 -2.7357 1.0531 33 1 1.5333 -2.2630 2.4967 34 1 0.7355 -2.3245 0.9067 35 1 1.3995 -0.1463 4.4484 36 1 1.5358 -1.9011 4.1191 37 1 2.6770 -2.2091 6.1539 38 1 2.5505 -0.4556 6.4890 39 1 5.0291 -0.8049 6.2003 40 1 4.3382 -3.1905 5.0321 41 1 5.7681 -2.3527 4.3565 42 1 3.2169 -2.8825 3.0410 43 1 4.6454 -2.0433 2.3643 44 1 5.2044 0.2023 3.7340 45 1 3.8506 1.0021 4.6200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666937942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:24 Heat of formation + Delta-G solvation = -18.039226 kcal Electronic energy + Delta-G solvation = -23852.358826 eV Core-core repulsion = 20677.053949 eV Total energy + Delta-G solvation = -3175.304876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68709 -38.55644 -36.16226 -33.94609 -32.03963 -30.22931 -30.16928 -29.08967 -27.66330 -26.50976 -25.55876 -22.90653 -22.20081 -22.00282 -19.62734 -19.26650 -18.47892 -17.00287 -16.52186 -16.05288 -15.29844 -14.97954 -14.78529 -14.52828 -14.10252 -13.60901 -13.16892 -12.74638 -12.65475 -12.56675 -12.43792 -12.25389 -12.00245 -11.94603 -11.80400 -11.60998 -11.37273 -11.16771 -10.86121 -10.84548 -10.80029 -10.73086 -10.67015 -10.41000 -10.15080 -10.02229 -9.85415 -9.64251 -9.19594 -8.81400 -8.12185 -6.83999 -5.67983 -2.97084 3.07520 3.41322 3.46748 3.51106 3.52366 4.41396 4.51424 4.62165 4.63904 4.98388 5.10921 5.20647 5.27271 5.35428 5.41826 5.43548 5.49388 5.51499 5.52725 5.60242 5.65094 5.69619 5.82739 5.87818 5.96768 6.02749 6.05132 6.10519 6.14650 6.18099 6.23110 6.24814 6.30706 6.35457 6.39810 6.43979 6.53512 6.56133 6.80190 7.10616 7.73991 7.87690 8.49503 8.69925 9.60880 10.20743 10.56561 11.53876 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.006139 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.698158 B = 4560.135097 C = 5606.125457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 H 0.099 0.901 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.240 4.240 7 H 0.067 0.933 8 C -0.012 4.012 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.593 5.593 15 C 0.074 3.926 16 C 0.548 3.452 17 O -0.537 6.537 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.093 4.093 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.019 0.981 30 H 0.387 0.613 31 H 0.254 0.746 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.587 -2.668 13.852 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.371 5.371 6 C -0.372 4.372 7 H 0.085 0.915 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.326 5.326 15 C -0.069 4.069 16 C 0.335 3.665 17 O -0.414 6.414 18 C -0.099 4.099 19 C -0.144 4.144 20 C -0.153 4.153 21 C -0.126 4.126 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.131 4.131 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.222 0.778 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.361 -2.162 13.562 17.203 hybrid contribution 0.717 -0.547 -0.729 1.160 sum -9.645 -2.709 12.833 16.280 Atomic orbital electron populations 1.22063 0.95356 1.01949 1.01959 1.21373 0.93054 0.98528 0.84929 0.88340 1.20986 0.87190 0.96622 0.93590 1.42290 0.99666 1.69884 1.25284 1.19157 0.89472 1.29287 0.99237 0.91454 1.24729 0.96423 1.01710 0.97997 1.69683 1.07130 1.50666 1.30152 0.86306 0.79051 0.79235 0.81791 1.21362 1.21750 1.21417 1.47562 1.50738 1.12056 1.22228 1.22021 1.01170 0.82485 1.01209 1.19674 0.77249 0.85783 0.83780 1.90679 1.54443 1.18904 1.77333 1.22810 0.97240 0.97157 0.92733 1.23277 0.96095 1.01235 0.93840 1.23237 0.94822 1.01128 0.96132 1.23556 0.96104 0.95767 0.97172 1.22616 1.00429 0.97062 0.95445 1.22768 0.99538 0.94388 0.98434 1.23315 0.98514 0.96816 0.94481 0.92409 0.92723 0.91466 0.95662 0.96343 0.77834 0.93591 0.91803 0.91246 0.91515 0.91669 0.91067 0.91560 0.91897 0.88475 0.91889 0.91602 0.91121 0.90153 0.90409 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.18 37.16 0.34 -1.70 16 2 C 0.12 2.21 2.79 -67.93 -0.19 2.02 16 3 H 0.10 2.01 6.91 -51.93 -0.36 1.65 16 4 C 0.14 3.01 5.56 -4.04 -0.02 2.99 16 5 N -0.73 -19.19 5.43 -59.91 -0.33 -19.51 16 6 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 10 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 N -0.59 -10.17 2.24 -173.93 -0.39 -10.56 16 15 C 0.07 1.04 7.96 59.84 0.48 1.52 16 16 C 0.55 10.29 6.82 -10.98 -0.07 10.22 16 17 O -0.54 -12.25 15.86 5.56 0.09 -12.16 16 18 C -0.10 -1.44 0.87 -150.40 -0.13 -1.57 16 19 C -0.11 -1.23 5.57 -22.14 -0.12 -1.35 16 20 C -0.12 -1.14 6.41 -22.14 -0.14 -1.29 16 21 C -0.11 -1.21 5.14 -85.35 -0.44 -1.65 16 22 C -0.12 -1.42 6.21 -24.34 -0.15 -1.57 16 23 C -0.11 -1.64 4.67 -24.36 -0.11 -1.76 16 24 C -0.09 -1.36 5.69 -22.43 -0.13 -1.49 16 25 H 0.06 0.69 6.67 -51.93 -0.35 0.34 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 30 H 0.39 11.13 7.06 -40.82 -0.29 10.84 16 31 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.06 1.03 7.62 -51.93 -0.40 0.63 16 33 H 0.07 0.80 3.60 -51.93 -0.19 0.61 16 34 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.72 5.86 -51.93 -0.30 0.42 16 37 H 0.07 0.57 7.82 -51.93 -0.41 0.17 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.90 5.69 -51.93 -0.30 0.61 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -33.34 340.70 -8.24 -41.58 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.50 Total: 8.98 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.94 Total: -3.14 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.01 Total: -58.25 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.34 -8.24 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666937942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.542 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds