Wall clock time and date at job start Fri Apr 10 2020 17:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47257 * 2 1 4 4 C 1.53002 * 109.47323 * 239.99911 * 2 1 3 5 5 N 1.46493 * 109.47522 * 184.99849 * 4 2 1 6 6 C 1.36936 * 120.00592 * 179.72695 * 5 4 2 7 7 H 1.07999 * 119.99197 * 0.26952 * 6 5 4 8 8 C 1.38810 * 120.00478 * 180.27941 * 6 5 4 9 9 N 1.31615 * 119.99774 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00110 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47153 * 59.99208 * 10 8 6 12 12 H 1.48493 * 109.47154 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46864 * 299.99734 * 10 8 6 14 14 N 1.46503 * 109.47278 * 119.99884 * 2 1 3 15 15 C 1.46495 * 119.99834 * 60.00096 * 14 2 1 16 16 C 1.34771 * 119.99765 * 240.00058 * 14 2 1 17 17 O 1.21283 * 120.00504 * 355.70245 * 16 14 2 18 18 C 1.50710 * 119.99741 * 175.70286 * 16 14 2 19 19 C 1.55924 * 115.92197 * 291.88458 * 18 16 14 20 20 C 1.58475 * 103.90457 * 199.42622 * 19 18 16 21 21 C 1.55924 * 103.90650 * 0.02562 * 20 19 18 22 22 C 1.55923 * 104.50099 * 289.45194 * 21 20 19 23 23 C 1.54584 * 104.64586 * 71.08452 * 22 21 20 24 24 C 1.56952 * 101.41177 * 33.74796 * 21 20 19 25 25 H 1.09001 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46996 * 299.99954 * 1 2 3 27 27 H 1.08998 * 109.47262 * 60.00362 * 1 2 3 28 28 H 1.09007 * 109.47010 * 64.99767 * 4 2 1 29 29 H 1.09003 * 109.46913 * 305.00266 * 4 2 1 30 30 H 0.97009 * 119.99819 * 0.02562 * 5 4 2 31 31 H 0.97005 * 120.00000 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47295 * 95.20131 * 15 14 2 33 33 H 1.09005 * 109.47302 * 215.20011 * 15 14 2 34 34 H 1.09004 * 109.47620 * 335.20069 * 15 14 2 35 35 H 1.08993 * 110.40152 * 318.75893 * 19 18 16 36 36 H 1.09001 * 110.39877 * 81.17476 * 19 18 16 37 37 H 1.08997 * 110.98594 * 241.33794 * 20 19 18 38 38 H 1.09003 * 110.62288 * 118.48587 * 20 19 18 39 39 H 1.08998 * 115.92203 * 160.57075 * 21 20 19 40 40 H 1.09006 * 110.39839 * 312.29742 * 22 21 20 41 41 H 1.09000 * 110.50493 * 189.92985 * 22 21 20 42 42 H 1.08999 * 110.40356 * 241.21597 * 23 22 21 43 43 H 1.08998 * 110.50255 * 118.84238 * 23 22 21 44 44 H 1.09002 * 112.02745 * 189.49939 * 24 21 20 45 45 H 1.09002 * 112.02623 * 62.97211 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1834 -1.4433 -2.2043 7 1 3.6463 -1.8485 -3.0491 8 6 5.5663 -1.5480 -2.1459 9 7 6.2208 -1.0539 -1.1165 10 14 6.4984 -2.3903 -3.5284 11 1 6.2463 -1.6732 -4.8041 12 1 7.9527 -2.3704 -3.2289 13 1 6.0370 -3.7965 -3.6516 14 7 2.0183 -0.6906 1.1962 15 6 1.6645 -2.0931 1.4280 16 6 2.7932 -0.0355 2.0833 17 8 3.1506 1.1004 1.8537 18 6 3.2155 -0.7147 3.3606 19 6 2.0794 -0.9962 4.3908 20 6 2.8501 -1.2079 5.7593 21 6 4.3506 -1.0259 5.3764 22 6 4.6939 -2.2902 4.5310 23 6 3.9422 -2.0838 3.1961 24 6 4.2535 0.0602 4.2475 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7516 -0.1583 -2.1370 29 1 1.6054 -1.7198 -1.2951 30 1 3.9824 -0.4627 -0.4316 31 1 7.1873 -1.1267 -1.0759 32 1 2.4612 -2.7357 1.0531 33 1 1.5333 -2.2630 2.4967 34 1 0.7355 -2.3245 0.9067 35 1 1.3995 -0.1463 4.4484 36 1 1.5358 -1.9011 4.1191 37 1 2.6770 -2.2091 6.1539 38 1 2.5505 -0.4556 6.4890 39 1 5.0291 -0.8049 6.2003 40 1 4.3382 -3.1905 5.0321 41 1 5.7681 -2.3527 4.3565 42 1 3.2169 -2.8825 3.0410 43 1 4.6454 -2.0433 2.3643 44 1 5.2044 0.2023 3.7340 45 1 3.8506 1.0021 4.6200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666937942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:23 Heat of formation + Delta-G solvation = -39.422089 kcal Electronic energy + Delta-G solvation = -23853.286056 eV Core-core repulsion = 20677.053949 eV Total energy + Delta-G solvation = -3176.232107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90046 -39.85308 -37.75967 -35.86085 -33.69191 -32.01539 -31.17932 -30.20487 -28.77951 -27.74708 -27.37969 -24.64461 -23.63541 -23.13320 -20.96662 -20.29671 -19.82593 -19.11759 -17.75431 -17.45592 -16.74847 -16.54439 -15.97106 -15.88772 -15.55646 -15.25099 -15.11433 -14.18257 -13.99401 -13.76462 -13.73916 -13.48486 -13.35792 -13.26178 -13.01724 -12.92838 -12.76738 -12.61273 -12.48087 -12.19877 -12.12894 -11.98247 -11.88188 -11.81160 -11.73054 -11.69044 -11.15416 -10.98866 -10.87338 -10.62395 -9.54957 -9.01728 -7.94419 -5.25078 1.42595 1.46966 1.53138 1.63948 2.09405 2.53715 3.31356 3.37570 3.48177 3.57670 3.73050 3.97652 4.10259 4.16830 4.22255 4.27494 4.29992 4.37890 4.44736 4.49256 4.53461 4.57100 4.60320 4.73671 4.78522 4.82855 4.84984 4.88927 4.99191 5.04635 5.07618 5.14102 5.16192 5.20731 5.25535 5.30433 5.37269 5.40461 5.43228 5.45431 5.71433 6.24168 6.49609 7.25851 7.30768 8.07643 8.31173 9.28220 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.006139 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.698158 B = 4560.135097 C = 5606.125457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.126 3.874 3 H 0.062 0.938 4 C 0.142 3.858 5 N -0.742 5.742 6 C -0.246 4.246 7 H 0.078 0.922 8 C -0.077 4.077 9 N -0.969 5.969 10 Si 0.977 3.023 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.273 1.273 14 N -0.592 5.592 15 C 0.072 3.928 16 C 0.533 3.467 17 O -0.593 6.593 18 C -0.104 4.104 19 C -0.099 4.099 20 C -0.105 4.105 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.105 4.105 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.370 0.630 31 H 0.248 0.752 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.023 0.977 44 H 0.038 0.962 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.025 -4.914 15.171 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.022 3.978 3 H 0.080 0.920 4 C 0.015 3.985 5 N -0.384 5.384 6 C -0.377 4.377 7 H 0.096 0.904 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.805 3.195 11 H -0.205 1.205 12 H -0.224 1.224 13 H -0.199 1.199 14 N -0.323 5.323 15 C -0.070 4.070 16 C 0.323 3.677 17 O -0.474 6.474 18 C -0.107 4.107 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.143 4.143 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.202 0.798 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.870 -4.449 14.857 20.153 hybrid contribution 1.451 0.201 -1.217 1.904 sum -11.420 -4.248 13.639 18.289 Atomic orbital electron populations 1.21965 0.90975 1.03772 1.03172 1.21298 0.96222 0.96205 0.84070 0.91963 1.21207 0.84198 0.97767 0.95314 1.42521 1.02016 1.69623 1.24265 1.19621 0.90039 1.28387 0.99701 0.90391 1.25632 0.97534 1.03132 1.00642 1.69894 1.06839 1.52727 1.32509 0.85167 0.76966 0.78658 0.78672 1.20500 1.22411 1.19877 1.47702 1.49977 1.13211 1.21397 1.22209 1.01269 0.79935 1.03541 1.20505 0.76570 0.85436 0.85222 1.90634 1.56526 1.21511 1.78758 1.22839 0.99211 0.96849 0.91830 1.23303 0.94841 1.02162 0.93388 1.23243 0.92529 1.03287 0.95174 1.23588 0.98187 0.93155 0.96203 1.22640 0.99412 0.98929 0.94248 1.22711 0.99012 0.94825 0.98058 1.23358 0.96693 0.98238 0.95995 0.90152 0.91680 0.90170 0.95439 0.94578 0.79814 0.94321 0.94352 0.88250 0.88847 0.91733 0.88888 0.88777 0.90410 0.86372 0.88609 0.92990 0.89000 0.95772 0.94291 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.18 71.98 0.66 -2.73 16 2 C 0.13 4.52 2.79 44.99 0.13 4.64 16 3 H 0.06 2.69 6.91 -2.39 -0.02 2.68 16 4 C 0.14 5.94 5.56 86.38 0.48 6.42 16 5 N -0.74 -40.54 5.43 -343.45 -1.87 -42.41 16 6 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 7 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 8 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 9 N -0.97 -63.20 13.06 21.65 0.28 -62.92 16 10 Si 0.98 47.91 29.55 68.60 2.03 49.94 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 14 N -0.59 -20.53 2.24 -822.58 -1.85 -22.37 16 15 C 0.07 1.91 7.96 127.77 1.02 2.92 16 16 C 0.53 21.06 6.82 87.66 0.60 21.66 16 17 O -0.59 -29.32 15.86 -3.04 -0.05 -29.36 16 18 C -0.10 -3.16 0.87 -49.52 -0.04 -3.20 16 19 C -0.10 -2.00 5.57 33.57 0.19 -1.81 16 20 C -0.11 -1.64 6.41 33.57 0.22 -1.42 16 21 C -0.09 -1.91 5.14 -7.38 -0.04 -1.95 16 22 C -0.11 -2.60 6.21 32.15 0.20 -2.40 16 23 C -0.11 -3.17 4.67 32.13 0.15 -3.02 16 24 C -0.10 -3.19 5.69 33.38 0.19 -3.00 16 25 H 0.08 1.59 6.67 -2.39 -0.02 1.58 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 30 H 0.37 22.60 7.06 -92.70 -0.65 21.94 16 31 H 0.25 15.74 8.31 -92.70 -0.77 14.97 16 32 H 0.04 1.22 7.62 -2.39 -0.02 1.20 16 33 H 0.10 1.99 3.60 -2.38 -0.01 1.98 16 34 H 0.09 1.96 6.44 -2.38 -0.02 1.95 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.46 5.86 -2.39 -0.01 1.44 16 37 H 0.09 1.05 7.82 -2.39 -0.02 1.03 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.10 1.59 7.82 -2.38 -0.02 1.57 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 2.21 5.69 -2.39 -0.01 2.20 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -78.64 340.70 3.92 -74.72 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.32 Total: 34.01 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.05 Total: -1.60 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -3.43 Total: -127.70 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -78.64 3.92 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666937942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.300 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds