Wall clock time and date at job start Fri Apr 10 2020 17:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47443 * 2 1 4 4 C 1.52996 * 109.47551 * 239.99494 * 2 1 3 5 5 N 1.46502 * 109.47313 * 185.00250 * 4 2 1 6 6 C 1.46499 * 119.99989 * 269.99672 * 5 4 2 7 7 C 1.36942 * 119.99902 * 90.00245 * 5 4 2 8 8 H 1.07998 * 119.99952 * 22.02440 * 7 5 4 9 9 C 1.38807 * 119.99682 * 202.02904 * 7 5 4 10 10 N 1.31619 * 120.00447 * 11.44094 * 9 7 5 11 11 Si 1.86804 * 119.99747 * 191.44245 * 9 7 5 12 12 H 1.48498 * 109.47135 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46978 * 119.99861 * 11 9 7 14 14 H 1.48500 * 109.46826 * 239.99976 * 11 9 7 15 15 N 1.46503 * 109.46655 * 119.99742 * 2 1 3 16 16 C 1.34783 * 119.99996 * 274.99872 * 15 2 1 17 17 O 1.21286 * 119.99756 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00153 * 180.02562 * 16 15 2 19 19 C 1.52996 * 109.47383 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.24372 * 305.34975 * 19 18 16 21 21 C 1.50067 * 109.35579 * 64.99763 * 19 18 16 22 22 C 1.29448 * 124.07250 * 137.34190 * 21 19 18 23 23 C 1.50064 * 124.07779 * 359.55124 * 22 21 19 24 24 C 1.53022 * 110.03432 * 17.18042 * 23 22 21 25 25 C 1.53020 * 109.36227 * 185.69055 * 19 18 16 26 26 H 1.08999 * 109.47261 * 300.00600 * 1 2 3 27 27 H 1.09005 * 109.46834 * 60.00793 * 1 2 3 28 28 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47124 * 305.00591 * 4 2 1 30 30 H 1.08998 * 109.47090 * 65.00104 * 4 2 1 31 31 H 1.09004 * 109.46599 * 94.04554 * 6 5 4 32 32 H 1.08996 * 109.47041 * 214.03873 * 6 5 4 33 33 H 1.08993 * 109.47128 * 334.04526 * 6 5 4 34 34 H 0.96995 * 120.00257 * 179.97438 * 10 9 7 35 35 H 0.96994 * 120.00218 * 95.00414 * 15 2 1 36 36 H 1.09000 * 109.47224 * 60.00062 * 18 16 15 37 37 H 1.08996 * 109.46802 * 300.00490 * 18 16 15 38 38 H 1.08003 * 117.96620 * 317.32180 * 21 19 18 39 39 H 1.08005 * 117.95800 * 179.53512 * 22 21 19 40 40 H 1.08992 * 109.35589 * 137.31610 * 23 22 21 41 41 H 1.09003 * 109.35980 * 257.04426 * 23 22 21 42 42 H 1.09001 * 109.64376 * 70.17752 * 24 23 22 43 43 H 1.08998 * 109.64676 * 190.81203 * 24 23 22 44 44 H 1.09005 * 109.63833 * 310.04431 * 25 19 18 45 45 H 1.09000 * 109.63983 * 70.45523 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1903 6 6 4.3345 0.2339 -1.7611 7 6 4.0850 -1.9160 -0.6020 8 1 3.5321 -2.8385 -0.5038 9 6 5.3885 -1.8346 -0.1318 10 7 5.9843 -0.6643 -0.0430 11 14 6.2971 -3.3861 0.3750 12 1 5.4128 -4.5632 0.1816 13 1 7.5165 -3.5401 -0.4584 14 1 6.6841 -3.2881 1.8054 15 7 2.0182 -0.6906 1.1963 16 6 2.1469 -0.0182 2.3573 17 8 1.8581 1.1586 2.4117 18 6 2.6497 -0.7283 3.5876 19 6 2.7004 0.2546 4.7590 20 1 3.2968 1.1216 4.4748 21 6 1.3072 0.6984 5.0965 22 6 0.8557 0.8148 6.3041 23 6 1.6593 0.5130 7.5350 24 6 3.1499 0.4743 7.1914 25 6 3.3431 -0.4292 5.9676 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6054 -1.7199 -1.2950 30 1 1.7518 -0.1585 -2.1369 31 1 4.5997 0.9472 -0.9807 32 1 5.2420 -0.2027 -2.1780 33 1 3.7824 0.7460 -2.5491 34 1 6.8950 -0.6074 0.2860 35 1 2.2489 -1.6317 1.1528 36 1 3.6490 -1.1202 3.3982 37 1 1.9775 -1.5506 3.8326 38 1 0.6397 0.9358 4.2813 39 1 -0.1627 1.1503 6.4338 40 1 1.4806 1.2865 8.2818 41 1 1.3559 -0.4539 7.9365 42 1 3.4998 1.4814 6.9643 43 1 3.7100 0.0701 8.0346 44 1 2.8635 -1.3925 6.1415 45 1 4.4068 -0.5778 5.7817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716484166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:40 Heat of formation + Delta-G solvation = -21.986999 kcal Electronic energy + Delta-G solvation = -23069.445918 eV Core-core repulsion = 19893.969854 eV Total energy + Delta-G solvation = -3175.476064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.51480 -38.04694 -36.21867 -33.92883 -32.44323 -31.26537 -30.85447 -30.00982 -26.85833 -26.14905 -25.60414 -22.62229 -22.07005 -21.52918 -20.06646 -19.48933 -17.75500 -16.86631 -16.29627 -15.83166 -15.45149 -14.90000 -14.60234 -14.15698 -13.84287 -13.67647 -13.28484 -12.95101 -12.86271 -12.67320 -12.53533 -12.22728 -12.01757 -11.89866 -11.80471 -11.39527 -11.27181 -11.13238 -10.87828 -10.74271 -10.70563 -10.40571 -10.35117 -10.22609 -10.03626 -9.94073 -9.84081 -8.98283 -8.77727 -8.59205 -8.16346 -6.79066 -5.75434 -3.21410 2.53724 3.31165 3.39479 3.41066 3.43166 4.01566 4.44166 4.82800 4.87500 4.96500 5.29731 5.33670 5.34669 5.48379 5.51736 5.60341 5.62598 5.68816 5.74346 5.82308 5.86402 5.95157 5.97894 6.03442 6.03629 6.14733 6.19139 6.21737 6.28449 6.47498 6.49929 6.53809 6.56555 6.75917 6.90901 6.94008 7.17575 7.37848 7.40449 7.69423 7.79195 8.34668 8.41589 9.06967 9.19137 9.83267 10.33409 11.28778 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.005637 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.971860 B = 4966.004598 C = 6236.034434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.165 3.835 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.690 5.690 16 C 0.518 3.482 17 O -0.562 6.562 18 C -0.133 4.133 19 C -0.043 4.043 20 H 0.088 0.912 21 C -0.120 4.120 22 C -0.183 4.183 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.045 0.955 33 H -0.005 1.005 34 H 0.251 0.749 35 H 0.403 0.597 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -0.512 9.147 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.544 5.544 11 Si 0.726 3.274 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.217 1.217 15 N -0.339 5.339 16 C 0.304 3.696 17 O -0.442 6.442 18 C -0.174 4.174 19 C -0.061 4.061 20 H 0.106 0.894 21 C -0.138 4.138 22 C -0.201 4.201 23 C -0.123 4.123 24 C -0.157 4.157 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.238 0.762 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.506 0.348 9.181 12.521 hybrid contribution 0.740 -1.168 0.243 1.403 sum -7.766 -0.820 9.423 12.239 Atomic orbital electron populations 1.22150 0.97114 1.01101 1.01392 1.21761 0.91613 0.98353 0.87241 0.90710 1.21178 0.85942 0.97826 0.93683 1.43898 0.98918 1.22643 1.66633 1.20788 0.92974 0.90463 0.93791 1.19122 0.96952 0.89502 1.32847 0.91549 1.24991 0.98616 0.96134 0.99552 1.70087 1.13122 1.21571 1.49647 0.86323 0.80119 0.82981 0.77957 1.20339 1.21669 1.21721 1.45743 1.65213 1.14285 1.08643 1.20394 0.77220 0.87185 0.84810 1.90604 1.51865 1.16180 1.85589 1.21657 1.03520 0.99057 0.93120 1.19818 0.94781 0.98105 0.93409 0.89406 1.22252 0.97023 0.97578 0.96968 1.21948 0.99677 1.04184 0.94310 1.20395 0.94594 1.01121 0.96180 1.21580 0.95967 1.00368 0.97765 1.21669 1.00767 0.98631 0.94348 0.93051 0.92444 0.93129 0.93439 0.93139 0.95468 0.93660 0.98636 0.93819 0.76201 0.88433 0.89725 0.87164 0.88556 0.91747 0.91492 0.91739 0.92001 0.91766 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.23 2.88 -67.93 -0.20 2.03 16 3 H 0.07 1.64 7.58 -51.93 -0.39 1.25 16 4 C 0.14 2.74 5.36 -4.04 -0.02 2.72 16 5 N -0.60 -14.20 2.82 -181.12 -0.51 -14.71 16 6 C 0.16 4.02 9.01 59.85 0.54 4.56 16 7 C -0.25 -6.40 8.02 -15.06 -0.12 -6.52 16 8 H 0.07 1.61 7.84 -52.49 -0.41 1.20 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -25.26 10.57 55.49 0.59 -24.68 16 11 Si 0.90 20.66 29.57 -169.99 -5.03 15.63 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.69 -13.16 4.49 -53.81 -0.24 -13.40 16 16 C 0.52 10.03 7.43 -10.98 -0.08 9.95 16 17 O -0.56 -12.38 13.95 5.55 0.08 -12.30 16 18 C -0.13 -2.14 5.13 -27.89 -0.14 -2.28 16 19 C -0.04 -0.65 2.11 -92.07 -0.19 -0.84 16 20 H 0.09 1.53 7.94 -51.93 -0.41 1.12 16 21 C -0.12 -1.80 8.42 -35.90 -0.30 -2.10 16 22 C -0.18 -2.35 9.80 -35.90 -0.35 -2.71 16 23 C -0.09 -0.93 6.12 -28.18 -0.17 -1.11 16 24 C -0.12 -1.34 6.00 -26.54 -0.16 -1.50 16 25 C -0.12 -1.47 5.31 -26.54 -0.14 -1.61 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 30 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 31 H 0.03 0.74 7.44 -51.93 -0.39 0.35 16 32 H 0.04 1.19 7.15 -51.93 -0.37 0.81 16 33 H 0.00 -0.11 7.85 -51.93 -0.41 -0.51 16 34 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.40 7.55 7.40 -40.82 -0.30 7.24 16 36 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.11 1.85 6.54 -52.48 -0.34 1.51 16 39 H 0.10 1.14 8.06 -52.48 -0.42 0.71 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -29.31 354.41 -8.91 -38.22 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.06 Total: 7.32 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.08 Total: -1.42 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.17 Total: -52.80 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.31 -8.91 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716484166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.233 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds