Wall clock time and date at job start Fri Apr 10 2020 17:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47443 * 2 1 4 4 C 1.52996 * 109.47551 * 239.99494 * 2 1 3 5 5 N 1.46502 * 109.47313 * 185.00250 * 4 2 1 6 6 C 1.46499 * 119.99989 * 269.99672 * 5 4 2 7 7 C 1.36942 * 119.99902 * 90.00245 * 5 4 2 8 8 H 1.07998 * 119.99952 * 22.02440 * 7 5 4 9 9 C 1.38807 * 119.99682 * 202.02904 * 7 5 4 10 10 N 1.31619 * 120.00447 * 11.44094 * 9 7 5 11 11 Si 1.86804 * 119.99747 * 191.44245 * 9 7 5 12 12 H 1.48498 * 109.47135 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46978 * 119.99861 * 11 9 7 14 14 H 1.48500 * 109.46826 * 239.99976 * 11 9 7 15 15 N 1.46503 * 109.46655 * 119.99742 * 2 1 3 16 16 C 1.34783 * 119.99996 * 274.99872 * 15 2 1 17 17 O 1.21286 * 119.99756 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00153 * 180.02562 * 16 15 2 19 19 C 1.52996 * 109.47383 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.24372 * 305.34975 * 19 18 16 21 21 C 1.50067 * 109.35579 * 64.99763 * 19 18 16 22 22 C 1.29448 * 124.07250 * 137.34190 * 21 19 18 23 23 C 1.50064 * 124.07779 * 359.55124 * 22 21 19 24 24 C 1.53022 * 110.03432 * 17.18042 * 23 22 21 25 25 C 1.53020 * 109.36227 * 185.69055 * 19 18 16 26 26 H 1.08999 * 109.47261 * 300.00600 * 1 2 3 27 27 H 1.09005 * 109.46834 * 60.00793 * 1 2 3 28 28 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47124 * 305.00591 * 4 2 1 30 30 H 1.08998 * 109.47090 * 65.00104 * 4 2 1 31 31 H 1.09004 * 109.46599 * 94.04554 * 6 5 4 32 32 H 1.08996 * 109.47041 * 214.03873 * 6 5 4 33 33 H 1.08993 * 109.47128 * 334.04526 * 6 5 4 34 34 H 0.96995 * 120.00257 * 179.97438 * 10 9 7 35 35 H 0.96994 * 120.00218 * 95.00414 * 15 2 1 36 36 H 1.09000 * 109.47224 * 60.00062 * 18 16 15 37 37 H 1.08996 * 109.46802 * 300.00490 * 18 16 15 38 38 H 1.08003 * 117.96620 * 317.32180 * 21 19 18 39 39 H 1.08005 * 117.95800 * 179.53512 * 22 21 19 40 40 H 1.08992 * 109.35589 * 137.31610 * 23 22 21 41 41 H 1.09003 * 109.35980 * 257.04426 * 23 22 21 42 42 H 1.09001 * 109.64376 * 70.17752 * 24 23 22 43 43 H 1.08998 * 109.64676 * 190.81203 * 24 23 22 44 44 H 1.09005 * 109.63833 * 310.04431 * 25 19 18 45 45 H 1.09000 * 109.63983 * 70.45523 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1903 6 6 4.3345 0.2339 -1.7611 7 6 4.0850 -1.9160 -0.6020 8 1 3.5321 -2.8385 -0.5038 9 6 5.3885 -1.8346 -0.1318 10 7 5.9843 -0.6643 -0.0430 11 14 6.2971 -3.3861 0.3750 12 1 5.4128 -4.5632 0.1816 13 1 7.5165 -3.5401 -0.4584 14 1 6.6841 -3.2881 1.8054 15 7 2.0182 -0.6906 1.1963 16 6 2.1469 -0.0182 2.3573 17 8 1.8581 1.1586 2.4117 18 6 2.6497 -0.7283 3.5876 19 6 2.7004 0.2546 4.7590 20 1 3.2968 1.1216 4.4748 21 6 1.3072 0.6984 5.0965 22 6 0.8557 0.8148 6.3041 23 6 1.6593 0.5130 7.5350 24 6 3.1499 0.4743 7.1914 25 6 3.3431 -0.4292 5.9676 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6054 -1.7199 -1.2950 30 1 1.7518 -0.1585 -2.1369 31 1 4.5997 0.9472 -0.9807 32 1 5.2420 -0.2027 -2.1780 33 1 3.7824 0.7460 -2.5491 34 1 6.8950 -0.6074 0.2860 35 1 2.2489 -1.6317 1.1528 36 1 3.6490 -1.1202 3.3982 37 1 1.9775 -1.5506 3.8326 38 1 0.6397 0.9358 4.2813 39 1 -0.1627 1.1503 6.4338 40 1 1.4806 1.2865 8.2818 41 1 1.3559 -0.4539 7.9365 42 1 3.4998 1.4814 6.9643 43 1 3.7100 0.0701 8.0346 44 1 2.8635 -1.3925 6.1415 45 1 4.4068 -0.5778 5.7817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716484166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:38 Heat of formation + Delta-G solvation = -38.140579 kcal Electronic energy + Delta-G solvation = -23070.146390 eV Core-core repulsion = 19893.969854 eV Total energy + Delta-G solvation = -3176.176536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94223 -39.26428 -37.90937 -35.66051 -33.70620 -33.04374 -31.87305 -31.55983 -28.09490 -27.97281 -27.36016 -23.94920 -23.24107 -22.99977 -21.59084 -21.04564 -18.81957 -18.73489 -17.81570 -17.15561 -16.81899 -16.71886 -16.04810 -15.57482 -15.19260 -15.03437 -15.00019 -14.48039 -14.29118 -13.90549 -13.75986 -13.54544 -13.29915 -13.20421 -13.08905 -12.98379 -12.81464 -12.70139 -12.52473 -12.36575 -12.14933 -11.93668 -11.90017 -11.73580 -11.65766 -11.41410 -11.01311 -10.60239 -10.49288 -9.85856 -9.73216 -8.75651 -7.75760 -5.23292 1.44448 1.47828 1.51962 1.59890 1.89110 2.52821 2.58255 3.40003 3.70879 3.76388 3.83940 3.92747 4.08183 4.20216 4.29030 4.40149 4.47225 4.49730 4.53939 4.58398 4.71074 4.75852 4.78517 4.84565 4.85950 4.91512 4.93951 5.01497 5.07340 5.08782 5.20214 5.21678 5.33440 5.41082 5.44193 5.48069 5.67209 5.73891 5.81846 5.88218 6.10971 6.36589 6.87045 7.18841 7.53985 7.91094 8.37698 9.28339 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.005637 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.971860 B = 4966.004598 C = 6236.034434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.121 3.879 3 H 0.035 0.965 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.245 4.245 8 H 0.081 0.919 9 C -0.048 4.048 10 N -0.938 5.938 11 Si 0.956 3.044 12 H -0.259 1.259 13 H -0.303 1.303 14 H -0.295 1.295 15 N -0.691 5.691 16 C 0.508 3.492 17 O -0.595 6.595 18 C -0.126 4.126 19 C -0.038 4.038 20 H 0.051 0.949 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.070 0.930 31 H -0.010 1.010 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.242 0.758 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -2.472 10.343 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.053 0.947 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.375 4.375 8 H 0.099 0.901 9 C -0.243 4.243 10 N -0.585 5.585 11 Si 0.785 3.215 12 H -0.183 1.183 13 H -0.230 1.230 14 H -0.222 1.222 15 N -0.340 5.340 16 C 0.296 3.704 17 O -0.477 6.477 18 C -0.166 4.166 19 C -0.057 4.057 20 H 0.069 0.931 21 C -0.167 4.167 22 C -0.179 4.179 23 C -0.123 4.123 24 C -0.157 4.157 25 C -0.151 4.151 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.008 0.992 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.241 0.759 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.273 -1.642 10.364 14.684 hybrid contribution 1.185 -0.503 -0.166 1.298 sum -9.088 -2.146 10.197 13.827 Atomic orbital electron populations 1.22007 0.93951 1.02567 1.01809 1.21648 0.93971 0.96009 0.87030 0.94659 1.21370 0.83284 0.99340 0.94494 1.44136 1.00830 1.22049 1.66436 1.20478 0.92800 0.89992 0.93286 1.19490 0.96832 0.90285 1.30910 0.90089 1.25671 0.99736 0.98331 1.00568 1.70284 1.12863 1.23652 1.51720 0.85363 0.78614 0.80637 0.76837 1.18291 1.23021 1.22186 1.45818 1.65067 1.14334 1.08743 1.21012 0.76648 0.86972 0.85779 1.90582 1.53264 1.17707 1.86172 1.21667 1.03210 0.99738 0.91979 1.19728 0.94874 0.96817 0.94249 0.93059 1.22013 0.96640 1.00822 0.97184 1.22261 1.00322 1.01036 0.94320 1.20490 0.93665 1.02803 0.95341 1.21602 0.96799 0.99483 0.97768 1.21662 1.00407 0.99311 0.93681 0.94362 0.90334 0.91029 0.91343 0.91152 0.99186 0.96124 0.95617 0.94857 0.75894 0.89387 0.86947 0.89802 0.87357 0.89886 0.89466 0.93000 0.89676 0.90249 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.48 71.98 0.68 -3.49 16 2 C 0.12 4.50 2.88 44.99 0.13 4.63 16 3 H 0.04 1.59 7.58 -2.39 -0.02 1.57 16 4 C 0.14 5.21 5.36 86.38 0.46 5.67 16 5 N -0.61 -28.74 2.82 -726.95 -2.05 -30.79 16 6 C 0.18 8.95 9.01 127.77 1.15 10.10 16 7 C -0.25 -12.11 8.02 84.03 0.67 -11.44 16 8 H 0.08 3.74 7.84 -2.91 -0.02 3.71 16 9 C -0.05 -2.53 5.13 84.86 0.44 -2.10 16 10 N -0.94 -54.43 10.57 21.65 0.23 -54.20 16 11 Si 0.96 42.54 29.57 68.60 2.03 44.57 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 15 N -0.69 -26.35 4.49 -442.53 -1.99 -28.34 16 16 C 0.51 20.28 7.43 87.66 0.65 20.93 16 17 O -0.59 -27.56 13.95 -3.05 -0.04 -27.61 16 18 C -0.13 -4.09 5.13 29.85 0.15 -3.94 16 19 C -0.04 -1.18 2.11 -11.73 -0.02 -1.20 16 20 H 0.05 1.92 7.94 -2.39 -0.02 1.91 16 21 C -0.15 -4.45 8.42 27.03 0.23 -4.23 16 22 C -0.16 -3.88 9.80 27.03 0.26 -3.61 16 23 C -0.09 -1.60 6.12 29.66 0.18 -1.42 16 24 C -0.12 -2.43 6.00 30.72 0.18 -2.25 16 25 C -0.11 -2.72 5.31 30.72 0.16 -2.55 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.27 8.03 -2.38 -0.02 2.25 16 30 H 0.07 2.32 7.86 -2.39 -0.02 2.30 16 31 H -0.01 -0.58 7.44 -2.39 -0.02 -0.60 16 32 H 0.02 1.09 7.15 -2.39 -0.02 1.07 16 33 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 34 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.41 14.83 7.40 -92.71 -0.69 14.14 16 36 H 0.09 3.01 8.14 -2.39 -0.02 3.00 16 37 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.08 2.94 6.54 -2.91 -0.02 2.92 16 39 H 0.11 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 1.18 8.12 -2.39 -0.02 1.17 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.67 8.10 -2.38 -0.02 1.65 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -65.76 354.41 3.77 -61.98 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.26 Total: 29.27 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.34 Total: 5.12 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -3.81 Total: -113.33 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.04 Total: -27.61 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -65.76 3.77 -61.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716484166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.844 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds