Wall clock time and date at job start Fri Apr 10 2020 17:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.46888 * 2 1 4 4 C 1.52994 * 109.47106 * 120.00447 * 2 1 3 5 5 N 1.46505 * 109.47204 * 174.99905 * 4 2 1 6 6 C 1.46498 * 120.00086 * 269.99959 * 5 4 2 7 7 C 1.36936 * 119.99567 * 89.99689 * 5 4 2 8 8 H 1.07998 * 120.00022 * 20.38830 * 7 5 4 9 9 C 1.38815 * 119.99494 * 200.37818 * 7 5 4 10 10 N 1.31616 * 120.00064 * 15.01195 * 9 7 5 11 11 Si 1.86806 * 119.99862 * 195.00573 * 9 7 5 12 12 H 1.48504 * 109.46714 * 85.00800 * 11 9 7 13 13 H 1.48496 * 109.46951 * 205.00873 * 11 9 7 14 14 H 1.48496 * 109.47133 * 325.00665 * 11 9 7 15 15 N 1.46494 * 109.46919 * 240.00402 * 2 1 3 16 16 C 1.34782 * 120.00289 * 84.99928 * 15 2 1 17 17 O 1.21273 * 119.99494 * 0.02562 * 16 15 2 18 18 C 1.50701 * 120.00064 * 179.97438 * 16 15 2 19 19 C 1.53004 * 109.46935 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.35552 * 54.72261 * 19 18 16 21 21 C 1.50063 * 109.35719 * 295.00282 * 19 18 16 22 22 C 1.29444 * 124.07336 * 222.64342 * 21 19 18 23 23 C 1.50069 * 124.07368 * 0.48520 * 22 21 19 24 24 C 1.53021 * 110.14747 * 342.86959 * 23 22 21 25 25 C 1.53024 * 109.35880 * 174.30933 * 19 18 16 26 26 H 1.09000 * 109.46983 * 59.99612 * 1 2 3 27 27 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46869 * 299.99869 * 1 2 3 29 29 H 1.09005 * 109.47034 * 295.00003 * 4 2 1 30 30 H 1.09005 * 109.47427 * 54.99718 * 4 2 1 31 31 H 1.08997 * 109.47088 * 95.12301 * 6 5 4 32 32 H 1.08994 * 109.47317 * 215.12472 * 6 5 4 33 33 H 1.09002 * 109.46978 * 335.12598 * 6 5 4 34 34 H 0.97001 * 120.00363 * 179.97438 * 10 9 7 35 35 H 0.97000 * 119.99982 * 265.00072 * 15 2 1 36 36 H 1.08995 * 109.46911 * 299.99714 * 18 16 15 37 37 H 1.08992 * 109.46982 * 60.00269 * 18 16 15 38 38 H 1.08001 * 117.96967 * 42.65541 * 21 19 18 39 39 H 1.07995 * 117.96496 * 180.51220 * 22 21 19 40 40 H 1.08992 * 109.36003 * 103.08101 * 23 22 21 41 41 H 1.09007 * 109.35375 * 222.79969 * 23 22 21 42 42 H 1.09008 * 109.63900 * 169.12210 * 24 23 22 43 43 H 1.08996 * 109.64318 * 289.53801 * 24 23 22 44 44 H 1.09004 * 109.63959 * 289.32770 * 25 19 18 45 45 H 1.09003 * 109.63854 * 49.95400 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5002 -0.8265 1.1905 6 6 4.1259 -1.9920 0.5610 7 6 4.2799 0.1648 1.7239 8 1 3.8671 0.8400 2.4588 9 6 5.6010 0.3015 1.3203 10 7 6.0234 -0.3084 0.2331 11 14 6.7792 1.3513 2.3200 12 1 7.3499 0.5394 3.4247 13 1 7.8760 1.8355 1.4437 14 1 6.0483 2.5133 2.8861 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3572 17 8 1.8591 1.1587 -2.4114 18 6 2.6499 -0.7283 -3.5876 19 6 2.7018 0.2550 -4.7586 20 1 3.2995 1.1217 -4.4763 21 6 1.3091 0.6999 -5.0966 22 6 0.8583 0.8173 -6.3044 23 6 1.6622 0.5148 -7.5350 24 6 3.1532 0.4724 -7.1933 25 6 3.3447 -0.4290 -5.9672 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -0.1584 2.1369 30 1 1.6054 -1.7199 1.2950 31 1 4.3629 -1.7606 -0.4774 32 1 5.0418 -2.2453 1.0949 33 1 3.4386 -2.8372 0.5972 34 1 6.9465 -0.2126 -0.0492 35 1 2.2490 -1.6317 -1.1527 36 1 3.6492 -1.1201 -3.3980 37 1 1.9777 -1.5506 -3.8326 38 1 0.6413 0.9371 -4.2817 39 1 -0.1594 1.1542 -6.4345 40 1 1.3563 -0.4505 -7.9382 41 1 1.4864 1.2900 -8.2809 42 1 3.7111 0.0664 -8.0372 43 1 3.5068 1.4790 -6.9705 44 1 4.4090 -0.5749 -5.7823 45 1 2.8645 -1.3919 -6.1415 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716484167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:44 Heat of formation + Delta-G solvation = -20.712878 kcal Electronic energy + Delta-G solvation = -22900.200570 eV Core-core repulsion = 19724.779755 eV Total energy + Delta-G solvation = -3175.420814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.60643 -38.10952 -36.26143 -33.97217 -32.51956 -31.19035 -30.90008 -30.15462 -26.94245 -26.17305 -25.57683 -22.68431 -22.11761 -21.49617 -20.14526 -19.62102 -17.80044 -16.78686 -16.53000 -15.89652 -15.44208 -14.90019 -14.62882 -14.20452 -13.91102 -13.69714 -13.23864 -13.11189 -12.96420 -12.67971 -12.55976 -12.17607 -12.07308 -11.98752 -11.87133 -11.43181 -11.23987 -11.06126 -10.82781 -10.78802 -10.76503 -10.52532 -10.42071 -10.19334 -9.99425 -9.95777 -9.82489 -9.07597 -8.82227 -8.57115 -8.27173 -6.77226 -5.72573 -3.14986 2.49431 3.33371 3.40113 3.46556 3.47413 3.88936 4.52173 4.77902 4.82409 4.91006 5.21210 5.28053 5.36343 5.43064 5.48600 5.54827 5.57787 5.66431 5.70676 5.77824 5.81175 5.90414 5.92877 5.98450 6.03086 6.04573 6.12396 6.16913 6.27679 6.44141 6.48649 6.49393 6.56329 6.64888 6.87359 6.93080 7.13028 7.26908 7.33624 7.64790 7.81409 8.23608 8.38304 8.94877 9.23446 9.86730 10.33739 11.33089 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.004677 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.075098 B = 5985.405314 C = 6850.775622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.255 4.255 8 H 0.069 0.931 9 C 0.004 3.996 10 N -0.905 5.905 11 Si 0.902 3.098 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.701 5.701 16 C 0.517 3.483 17 O -0.552 6.552 18 C -0.133 4.133 19 C -0.043 4.043 20 H 0.089 0.911 21 C -0.122 4.122 22 C -0.182 4.182 23 C -0.086 4.086 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.042 0.958 33 H -0.005 1.005 34 H 0.251 0.749 35 H 0.394 0.606 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 -3.966 -11.187 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.550 5.550 11 Si 0.733 3.267 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.350 5.350 16 C 0.304 3.696 17 O -0.431 6.431 18 C -0.173 4.173 19 C -0.061 4.061 20 H 0.107 0.893 21 C -0.140 4.140 22 C -0.200 4.200 23 C -0.123 4.123 24 C -0.158 4.158 25 C -0.153 4.153 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.228 0.772 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.923 -3.138 -11.262 14.707 hybrid contribution 0.823 0.219 0.536 1.007 sum -8.099 -2.919 -10.726 13.754 Atomic orbital electron populations 1.22148 0.97083 1.00940 1.01542 1.21816 0.91514 0.99135 0.86631 0.89806 1.21182 0.85713 0.97192 0.94442 1.43912 0.99090 1.20864 1.68083 1.20837 0.94504 0.85078 0.97847 1.19191 0.92935 1.09678 1.16654 0.91353 1.24915 0.98566 0.99422 0.96501 1.70055 1.15895 1.46894 1.22180 0.86299 0.80948 0.80046 0.79417 1.21549 1.21823 1.20603 1.45818 1.66214 1.13612 1.09360 1.20420 0.77272 0.87286 0.84660 1.90626 1.51095 1.16029 1.85343 1.21669 1.03350 0.99119 0.93165 1.19818 0.94854 0.98114 0.93363 0.89321 1.22244 0.97009 0.97764 0.97003 1.21953 0.99711 1.03996 0.94301 1.20398 0.94597 1.01149 0.96189 1.21591 0.95966 1.00436 0.97768 1.21666 1.00728 0.98611 0.94300 0.93068 0.93305 0.92263 0.92436 0.94085 0.95076 0.93881 0.98661 0.93891 0.77248 0.88474 0.89667 0.87178 0.88516 0.91463 0.91727 0.91948 0.91731 0.91438 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 37.16 0.35 -2.06 16 2 C 0.12 2.20 2.88 -67.93 -0.20 2.00 16 3 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 4 C 0.14 2.78 5.33 -4.04 -0.02 2.75 16 5 N -0.60 -14.32 2.78 -181.12 -0.50 -14.82 16 6 C 0.16 3.72 7.60 59.85 0.45 4.18 16 7 C -0.26 -6.93 9.68 -15.06 -0.15 -7.08 16 8 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 9 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 10 N -0.91 -25.90 10.67 55.49 0.59 -25.30 16 11 Si 0.90 22.09 29.58 -169.99 -5.03 17.06 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 N -0.70 -12.64 4.42 -53.81 -0.24 -12.88 16 16 C 0.52 9.62 7.43 -10.98 -0.08 9.54 16 17 O -0.55 -12.06 13.96 5.56 0.08 -11.98 16 18 C -0.13 -1.95 5.13 -27.88 -0.14 -2.10 16 19 C -0.04 -0.62 2.11 -92.07 -0.19 -0.81 16 20 H 0.09 1.50 7.94 -51.93 -0.41 1.09 16 21 C -0.12 -1.76 8.42 -35.90 -0.30 -2.06 16 22 C -0.18 -2.25 9.80 -35.90 -0.35 -2.60 16 23 C -0.09 -0.89 6.12 -28.18 -0.17 -1.07 16 24 C -0.12 -1.28 6.01 -26.53 -0.16 -1.44 16 25 C -0.12 -1.35 5.30 -26.52 -0.14 -1.49 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 30 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 31 H 0.03 0.76 6.97 -51.93 -0.36 0.39 16 32 H 0.04 1.09 7.22 -51.93 -0.37 0.72 16 33 H -0.01 -0.10 7.83 -51.93 -0.41 -0.51 16 34 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.39 6.51 7.18 -40.82 -0.29 6.22 16 36 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.11 1.80 6.54 -52.49 -0.34 1.46 16 39 H 0.10 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -30.80 353.96 -8.98 -39.79 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.03 Total: 5.00 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.19 Total: -2.20 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.15 Total: -53.00 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.80 -8.98 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716484167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.075 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds