Wall clock time and date at job start Fri Apr 10 2020 17:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.46888 * 2 1 4 4 C 1.52994 * 109.47106 * 120.00447 * 2 1 3 5 5 N 1.46505 * 109.47204 * 174.99905 * 4 2 1 6 6 C 1.46498 * 120.00086 * 269.99959 * 5 4 2 7 7 C 1.36936 * 119.99567 * 89.99689 * 5 4 2 8 8 H 1.07998 * 120.00022 * 20.38830 * 7 5 4 9 9 C 1.38815 * 119.99494 * 200.37818 * 7 5 4 10 10 N 1.31616 * 120.00064 * 15.01195 * 9 7 5 11 11 Si 1.86806 * 119.99862 * 195.00573 * 9 7 5 12 12 H 1.48504 * 109.46714 * 85.00800 * 11 9 7 13 13 H 1.48496 * 109.46951 * 205.00873 * 11 9 7 14 14 H 1.48496 * 109.47133 * 325.00665 * 11 9 7 15 15 N 1.46494 * 109.46919 * 240.00402 * 2 1 3 16 16 C 1.34782 * 120.00289 * 84.99928 * 15 2 1 17 17 O 1.21273 * 119.99494 * 0.02562 * 16 15 2 18 18 C 1.50701 * 120.00064 * 179.97438 * 16 15 2 19 19 C 1.53004 * 109.46935 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.35552 * 54.72261 * 19 18 16 21 21 C 1.50063 * 109.35719 * 295.00282 * 19 18 16 22 22 C 1.29444 * 124.07336 * 222.64342 * 21 19 18 23 23 C 1.50069 * 124.07368 * 0.48520 * 22 21 19 24 24 C 1.53021 * 110.14747 * 342.86959 * 23 22 21 25 25 C 1.53024 * 109.35880 * 174.30933 * 19 18 16 26 26 H 1.09000 * 109.46983 * 59.99612 * 1 2 3 27 27 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46869 * 299.99869 * 1 2 3 29 29 H 1.09005 * 109.47034 * 295.00003 * 4 2 1 30 30 H 1.09005 * 109.47427 * 54.99718 * 4 2 1 31 31 H 1.08997 * 109.47088 * 95.12301 * 6 5 4 32 32 H 1.08994 * 109.47317 * 215.12472 * 6 5 4 33 33 H 1.09002 * 109.46978 * 335.12598 * 6 5 4 34 34 H 0.97001 * 120.00363 * 179.97438 * 10 9 7 35 35 H 0.97000 * 119.99982 * 265.00072 * 15 2 1 36 36 H 1.08995 * 109.46911 * 299.99714 * 18 16 15 37 37 H 1.08992 * 109.46982 * 60.00269 * 18 16 15 38 38 H 1.08001 * 117.96967 * 42.65541 * 21 19 18 39 39 H 1.07995 * 117.96496 * 180.51220 * 22 21 19 40 40 H 1.08992 * 109.36003 * 103.08101 * 23 22 21 41 41 H 1.09007 * 109.35375 * 222.79969 * 23 22 21 42 42 H 1.09008 * 109.63900 * 169.12210 * 24 23 22 43 43 H 1.08996 * 109.64318 * 289.53801 * 24 23 22 44 44 H 1.09004 * 109.63959 * 289.32770 * 25 19 18 45 45 H 1.09003 * 109.63854 * 49.95400 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5002 -0.8265 1.1905 6 6 4.1259 -1.9920 0.5610 7 6 4.2799 0.1648 1.7239 8 1 3.8671 0.8400 2.4588 9 6 5.6010 0.3015 1.3203 10 7 6.0234 -0.3084 0.2331 11 14 6.7792 1.3513 2.3200 12 1 7.3499 0.5394 3.4247 13 1 7.8760 1.8355 1.4437 14 1 6.0483 2.5133 2.8861 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3572 17 8 1.8591 1.1587 -2.4114 18 6 2.6499 -0.7283 -3.5876 19 6 2.7018 0.2550 -4.7586 20 1 3.2995 1.1217 -4.4763 21 6 1.3091 0.6999 -5.0966 22 6 0.8583 0.8173 -6.3044 23 6 1.6622 0.5148 -7.5350 24 6 3.1532 0.4724 -7.1933 25 6 3.3447 -0.4290 -5.9672 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -0.1584 2.1369 30 1 1.6054 -1.7199 1.2950 31 1 4.3629 -1.7606 -0.4774 32 1 5.0418 -2.2453 1.0949 33 1 3.4386 -2.8372 0.5972 34 1 6.9465 -0.2126 -0.0492 35 1 2.2490 -1.6317 -1.1527 36 1 3.6492 -1.1201 -3.3980 37 1 1.9777 -1.5506 -3.8326 38 1 0.6413 0.9371 -4.2817 39 1 -0.1594 1.1542 -6.4345 40 1 1.3563 -0.4505 -7.9382 41 1 1.4864 1.2900 -8.2809 42 1 3.7111 0.0664 -8.0372 43 1 3.5068 1.4790 -6.9705 44 1 4.4090 -0.5749 -5.7823 45 1 2.8645 -1.3919 -6.1415 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716484167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:42 Heat of formation + Delta-G solvation = -38.341367 kcal Electronic energy + Delta-G solvation = -22900.964998 eV Core-core repulsion = 19724.779755 eV Total energy + Delta-G solvation = -3176.185243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.98161 -39.27000 -37.93124 -35.71480 -33.71079 -33.00335 -31.86562 -31.70000 -28.10545 -27.91525 -27.39353 -23.97823 -23.20625 -22.96227 -21.67772 -21.09566 -18.81159 -18.76941 -17.93096 -17.16976 -16.82597 -16.70374 -16.06586 -15.53269 -15.37159 -15.05067 -14.98151 -14.50782 -14.32311 -13.82320 -13.72147 -13.53498 -13.37939 -13.20468 -13.10205 -12.97827 -12.79414 -12.64047 -12.54391 -12.40147 -12.24075 -12.03685 -11.82117 -11.72289 -11.69988 -11.40243 -11.00891 -10.64200 -10.50673 -9.86627 -9.81722 -8.74493 -7.82259 -5.24911 1.44070 1.44392 1.44687 1.51979 1.86803 2.47472 2.53847 3.31230 3.70734 3.75565 3.84396 3.92590 4.07011 4.21517 4.30113 4.39708 4.45424 4.50186 4.53803 4.57665 4.72063 4.76457 4.80875 4.84928 4.85618 4.92255 4.93569 5.00642 5.08630 5.10174 5.21452 5.23340 5.37779 5.39397 5.45163 5.49789 5.64805 5.76905 5.81252 5.85969 6.11152 6.33708 6.79307 7.18247 7.50294 7.91110 8.30500 9.20400 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.004677 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.075098 B = 5985.405314 C = 6850.775622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 H 0.032 0.968 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.174 3.826 7 C -0.262 4.262 8 H 0.065 0.935 9 C -0.048 4.048 10 N -0.929 5.929 11 Si 0.957 3.043 12 H -0.282 1.282 13 H -0.299 1.299 14 H -0.276 1.276 15 N -0.698 5.698 16 C 0.507 3.493 17 O -0.592 6.592 18 C -0.124 4.124 19 C -0.039 4.039 20 H 0.049 0.951 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.111 4.111 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.037 0.963 34 H 0.245 0.755 35 H 0.403 0.597 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 -5.530 -12.199 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.030 3.970 7 C -0.392 4.392 8 H 0.083 0.917 9 C -0.244 4.244 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.209 1.209 13 H -0.226 1.226 14 H -0.202 1.202 15 N -0.348 5.348 16 C 0.295 3.705 17 O -0.474 6.474 18 C -0.163 4.163 19 C -0.058 4.058 20 H 0.068 0.932 21 C -0.168 4.168 22 C -0.180 4.180 23 C -0.123 4.123 24 C -0.158 4.158 25 C -0.148 4.148 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.239 0.761 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.190 -4.725 -12.254 16.623 hybrid contribution 1.116 0.729 0.860 1.586 sum -9.074 -3.996 -11.394 15.105 Atomic orbital electron populations 1.22002 0.93888 1.02730 1.01657 1.21606 0.93891 0.96271 0.86794 0.94961 1.21352 0.83240 0.99226 0.94583 1.44115 1.00867 1.20456 1.67945 1.20635 0.94265 0.86062 0.96086 1.19474 0.93548 1.09881 1.16328 0.91689 1.25566 1.00043 1.01146 0.97601 1.70196 1.15583 1.48391 1.23378 0.85427 0.78930 0.78851 0.78106 1.20913 1.22569 1.20170 1.45831 1.65929 1.13974 1.09023 1.21160 0.76561 0.87026 0.85786 1.90603 1.52799 1.17929 1.86049 1.21682 1.03597 0.99639 0.91427 1.19739 0.94664 0.96910 0.94497 0.93239 1.22031 0.96808 1.00856 0.97115 1.22257 1.00295 1.01030 0.94394 1.20489 0.93786 1.02790 0.95263 1.21619 0.96661 0.99545 0.98000 1.21654 1.00572 0.99265 0.93338 0.94369 0.90546 0.90779 0.92117 0.90541 0.96848 0.97062 0.94415 0.94610 0.76150 0.88589 0.86528 0.89960 0.87537 0.89338 0.90119 0.89597 0.93227 0.91426 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.48 71.99 0.68 -3.50 16 2 C 0.12 4.58 2.88 44.99 0.13 4.71 16 3 H 0.03 1.54 7.58 -2.39 -0.02 1.52 16 4 C 0.14 5.33 5.33 86.38 0.46 5.79 16 5 N -0.61 -29.06 2.78 -726.93 -2.02 -31.08 16 6 C 0.17 7.89 7.60 127.77 0.97 8.86 16 7 C -0.26 -14.36 9.68 84.03 0.81 -13.55 16 8 H 0.07 3.53 7.86 -2.91 -0.02 3.51 16 9 C -0.05 -2.71 5.06 84.86 0.43 -2.28 16 10 N -0.93 -54.34 10.67 21.65 0.23 -54.11 16 11 Si 0.96 46.15 29.58 68.60 2.03 48.18 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 N -0.70 -25.05 4.42 -442.55 -1.96 -27.01 16 16 C 0.51 19.37 7.43 87.66 0.65 20.02 16 17 O -0.59 -27.34 13.96 -3.01 -0.04 -27.39 16 18 C -0.12 -3.63 5.13 29.85 0.15 -3.48 16 19 C -0.04 -1.15 2.11 -11.73 -0.02 -1.18 16 20 H 0.05 1.80 7.94 -2.39 -0.02 1.78 16 21 C -0.15 -4.36 8.42 27.04 0.23 -4.13 16 22 C -0.16 -3.77 9.80 27.04 0.27 -3.51 16 23 C -0.09 -1.54 6.12 29.66 0.18 -1.36 16 24 C -0.12 -2.33 6.01 30.73 0.18 -2.14 16 25 C -0.11 -2.42 5.30 30.73 0.16 -2.26 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 2.23 8.03 -2.38 -0.02 2.21 16 30 H 0.08 2.34 7.86 -2.38 -0.02 2.32 16 31 H 0.01 0.65 6.97 -2.39 -0.02 0.63 16 32 H 0.01 0.55 7.22 -2.39 -0.02 0.53 16 33 H 0.04 1.36 7.83 -2.39 -0.02 1.34 16 34 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.40 12.79 7.18 -92.71 -0.67 12.12 16 36 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.08 2.83 6.54 -2.91 -0.02 2.81 16 39 H 0.11 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -69.47 353.96 3.80 -65.67 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.28 Total: 23.73 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.29 Total: 2.00 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.75 Total: -112.20 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.04 Total: -27.39 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -69.47 3.80 -65.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716484167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.327 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds