Wall clock time and date at job start Fri Apr 10 2020 17:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46969 * 2 1 4 4 C 1.52997 * 109.47026 * 120.00456 * 2 1 3 5 5 N 1.46505 * 109.47048 * 174.99850 * 4 2 1 6 6 C 1.46505 * 119.99852 * 270.00298 * 5 4 2 7 7 C 1.36930 * 119.99999 * 89.99544 * 5 4 2 8 8 H 1.07998 * 120.00106 * 23.62130 * 7 5 4 9 9 C 1.38812 * 120.00061 * 203.61454 * 7 5 4 10 10 N 1.31614 * 120.00016 * 11.32630 * 9 7 5 11 11 Si 1.86802 * 120.00215 * 191.32292 * 9 7 5 12 12 H 1.48505 * 109.46921 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47331 * 119.99684 * 11 9 7 14 14 H 1.48498 * 109.47254 * 240.00361 * 11 9 7 15 15 N 1.46501 * 109.46688 * 240.00381 * 2 1 3 16 16 C 1.34777 * 120.00188 * 85.00309 * 15 2 1 17 17 O 1.21283 * 119.99824 * 359.97438 * 16 15 2 18 18 C 1.50697 * 120.00023 * 179.97438 * 16 15 2 19 19 C 1.53000 * 109.46922 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.24922 * 305.34291 * 19 18 16 21 21 C 1.50065 * 109.35917 * 65.00146 * 19 18 16 22 22 C 1.29441 * 124.07665 * 137.33472 * 21 19 18 23 23 C 1.50067 * 124.07628 * 359.55682 * 22 21 19 24 24 C 1.53021 * 110.03805 * 17.17714 * 23 22 21 25 25 C 1.53027 * 109.35983 * 185.69039 * 19 18 16 26 26 H 1.09002 * 109.46441 * 299.99639 * 1 2 3 27 27 H 1.09003 * 109.46872 * 59.99587 * 1 2 3 28 28 H 1.08995 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47012 * 294.99542 * 4 2 1 30 30 H 1.09000 * 109.47202 * 55.00103 * 4 2 1 31 31 H 1.08992 * 109.47300 * 94.52857 * 6 5 4 32 32 H 1.09002 * 109.46804 * 214.52871 * 6 5 4 33 33 H 1.08995 * 109.47061 * 334.52619 * 6 5 4 34 34 H 0.97000 * 119.99823 * 180.02562 * 10 9 7 35 35 H 0.97001 * 119.99924 * 265.00037 * 15 2 1 36 36 H 1.08998 * 109.47272 * 59.99971 * 18 16 15 37 37 H 1.08997 * 109.47337 * 299.99773 * 18 16 15 38 38 H 1.08003 * 117.96300 * 317.31973 * 21 19 18 39 39 H 1.08000 * 117.96263 * 179.53175 * 22 21 19 40 40 H 1.09002 * 109.35708 * 137.31891 * 23 22 21 41 41 H 1.09002 * 109.35604 * 257.03391 * 23 22 21 42 42 H 1.08999 * 109.64215 * 70.17404 * 24 23 22 43 43 H 1.08998 * 109.64391 * 190.81401 * 24 23 22 44 44 H 1.09007 * 109.63817 * 310.04517 * 25 19 18 45 45 H 1.09004 * 109.64279 * 70.45748 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9921 0.5609 7 6 4.2799 0.1647 1.7239 8 1 3.8835 0.8068 2.4964 9 6 5.5800 0.3440 1.2717 10 7 5.9918 -0.2795 0.1882 11 14 6.7451 1.4703 2.2009 12 1 6.0440 2.0468 3.3762 13 1 7.9238 0.6928 2.6607 14 1 7.1938 2.5663 1.3050 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1585 -2.4117 18 6 2.6498 -0.7284 -3.5875 19 6 2.7006 0.2547 -4.7589 20 1 1.7206 0.7151 -4.8844 21 6 3.7174 1.3200 -4.4705 22 6 4.5625 1.7707 -5.3412 23 6 4.6500 1.2842 -6.7581 24 6 3.3718 0.5315 -7.1339 25 6 3.0745 -0.4985 -6.0374 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7517 -0.1584 2.1369 30 1 1.6054 -1.7199 1.2950 31 1 4.3532 -1.7643 -0.4804 32 1 5.0472 -2.2389 1.0884 33 1 3.4427 -2.8401 0.6066 34 1 6.9004 -0.1544 -0.1275 35 1 2.2490 -1.6317 -1.1528 36 1 1.9776 -1.5506 -3.8327 37 1 3.6491 -1.1202 -3.3981 38 1 3.7456 1.7368 -3.4745 39 1 5.2470 2.5454 -5.0286 40 1 4.7768 2.1365 -7.4256 41 1 5.5055 0.6162 -6.8586 42 1 2.5425 1.2344 -7.2130 43 1 3.5143 0.0195 -8.0855 44 1 3.9586 -1.1102 -5.8570 45 1 2.2446 -1.1355 -6.3434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716484168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:48 Heat of formation + Delta-G solvation = -21.093617 kcal Electronic energy + Delta-G solvation = -23074.051237 eV Core-core repulsion = 19898.613912 eV Total energy + Delta-G solvation = -3175.437324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57593 -38.05628 -36.24298 -33.95618 -32.48062 -31.17678 -30.78341 -30.14346 -26.90324 -26.16168 -25.56619 -22.62173 -22.07253 -21.47216 -20.13153 -19.60445 -17.73084 -16.77624 -16.50701 -15.80141 -15.37539 -14.89657 -14.71519 -14.12501 -13.76815 -13.68546 -13.28470 -13.18423 -12.74914 -12.63470 -12.47862 -12.27469 -12.09222 -11.88696 -11.74902 -11.43448 -11.27568 -11.00666 -10.84475 -10.76756 -10.74137 -10.54068 -10.36573 -10.17753 -9.94171 -9.88861 -9.83466 -9.06392 -8.66584 -8.57402 -8.26164 -6.72756 -5.71827 -3.17610 2.68083 3.34053 3.38861 3.46576 3.47995 3.90359 4.51864 4.84275 4.86896 4.94176 5.24707 5.34363 5.37806 5.47331 5.51063 5.60842 5.64699 5.70993 5.73635 5.84616 5.87785 5.91162 5.97978 5.99063 6.01467 6.04548 6.13504 6.20881 6.28515 6.47574 6.50406 6.56578 6.58971 6.66536 6.93507 7.07818 7.26176 7.32335 7.35877 7.66972 7.81957 8.24660 8.40495 8.95911 9.24414 9.86719 10.35133 11.33279 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.005609 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.269207 B = 4990.894488 C = 6192.327888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.902 3.098 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.701 5.701 16 C 0.517 3.483 17 O -0.552 6.552 18 C -0.134 4.134 19 C -0.040 4.040 20 H 0.084 0.916 21 C -0.123 4.123 22 C -0.181 4.181 23 C -0.086 4.086 24 C -0.118 4.118 25 C -0.116 4.116 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.042 0.958 33 H -0.006 1.006 34 H 0.250 0.750 35 H 0.394 0.606 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -3.618 -10.700 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.732 3.268 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.350 5.350 16 C 0.304 3.696 17 O -0.431 6.431 18 C -0.174 4.174 19 C -0.058 4.058 20 H 0.102 0.898 21 C -0.141 4.141 22 C -0.199 4.199 23 C -0.123 4.123 24 C -0.156 4.156 25 C -0.154 4.154 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.012 0.988 34 H 0.060 0.940 35 H 0.227 0.773 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.410 -2.791 -10.767 13.365 hybrid contribution 1.001 0.281 0.536 1.169 sum -6.409 -2.510 -10.231 12.331 Atomic orbital electron populations 1.22148 0.97094 1.00927 1.01552 1.21809 0.91494 0.99125 0.86623 0.89828 1.21188 0.85801 0.97131 0.94416 1.43880 0.99054 1.20850 1.68146 1.20837 0.94500 0.85040 0.97878 1.19203 0.94554 1.10518 1.14176 0.91482 1.25004 0.98874 0.99048 0.96360 1.70036 1.17059 1.45665 1.22059 0.86227 0.81083 0.80286 0.79200 1.20360 1.21711 1.21794 1.45817 1.66184 1.13600 1.09366 1.20415 0.77205 0.87298 0.84712 1.90629 1.51065 1.15996 1.85421 1.21689 1.03370 0.98998 0.93380 1.19795 0.99091 0.94014 0.92911 0.89842 1.22236 0.95128 0.96689 0.99998 1.21942 1.00670 1.01997 0.95299 1.20401 0.97857 0.99423 0.94650 1.21568 0.98025 0.98085 0.97879 1.21674 1.01474 0.97579 0.94640 0.92271 0.93044 0.93318 0.92479 0.94136 0.95015 0.93943 0.98758 0.93960 0.77258 0.89553 0.88618 0.86756 0.88382 0.91763 0.91387 0.91874 0.92057 0.91537 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.21 2.88 -67.93 -0.20 2.02 16 3 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 4 C 0.14 2.78 5.33 -4.04 -0.02 2.76 16 5 N -0.60 -14.32 2.78 -181.12 -0.50 -14.83 16 6 C 0.16 3.73 7.61 59.85 0.46 4.19 16 7 C -0.25 -6.92 9.66 -15.06 -0.15 -7.07 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -25.83 10.66 55.49 0.59 -25.24 16 11 Si 0.90 22.15 29.57 -169.99 -5.03 17.13 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 N -0.70 -12.68 4.41 -53.81 -0.24 -12.91 16 16 C 0.52 9.66 7.43 -10.99 -0.08 9.58 16 17 O -0.55 -12.10 13.95 5.55 0.08 -12.02 16 18 C -0.13 -1.99 5.13 -27.88 -0.14 -2.13 16 19 C -0.04 -0.57 2.11 -92.06 -0.19 -0.77 16 20 H 0.08 1.27 7.94 -51.93 -0.41 0.86 16 21 C -0.12 -2.08 8.42 -35.90 -0.30 -2.38 16 22 C -0.18 -2.73 9.80 -35.90 -0.35 -3.08 16 23 C -0.09 -1.03 6.12 -28.18 -0.17 -1.20 16 24 C -0.12 -1.28 6.00 -26.54 -0.16 -1.44 16 25 C -0.12 -1.34 5.31 -26.54 -0.14 -1.48 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 30 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 31 H 0.03 0.77 6.90 -51.93 -0.36 0.41 16 32 H 0.04 1.08 7.30 -51.93 -0.38 0.70 16 33 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 34 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.39 6.54 7.17 -40.82 -0.29 6.25 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.11 2.37 6.53 -52.48 -0.34 2.03 16 39 H 0.10 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -30.84 353.96 -8.98 -39.82 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.03 Total: 5.72 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.19 Total: -3.00 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.15 Total: -52.98 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.84 -8.98 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716484168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.727 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds