Wall clock time and date at job start Fri Apr 10 2020 17:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46969 * 2 1 4 4 C 1.52997 * 109.47026 * 120.00456 * 2 1 3 5 5 N 1.46505 * 109.47048 * 174.99850 * 4 2 1 6 6 C 1.46505 * 119.99852 * 270.00298 * 5 4 2 7 7 C 1.36930 * 119.99999 * 89.99544 * 5 4 2 8 8 H 1.07998 * 120.00106 * 23.62130 * 7 5 4 9 9 C 1.38812 * 120.00061 * 203.61454 * 7 5 4 10 10 N 1.31614 * 120.00016 * 11.32630 * 9 7 5 11 11 Si 1.86802 * 120.00215 * 191.32292 * 9 7 5 12 12 H 1.48505 * 109.46921 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47331 * 119.99684 * 11 9 7 14 14 H 1.48498 * 109.47254 * 240.00361 * 11 9 7 15 15 N 1.46501 * 109.46688 * 240.00381 * 2 1 3 16 16 C 1.34777 * 120.00188 * 85.00309 * 15 2 1 17 17 O 1.21283 * 119.99824 * 359.97438 * 16 15 2 18 18 C 1.50697 * 120.00023 * 179.97438 * 16 15 2 19 19 C 1.53000 * 109.46922 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.24922 * 305.34291 * 19 18 16 21 21 C 1.50065 * 109.35917 * 65.00146 * 19 18 16 22 22 C 1.29441 * 124.07665 * 137.33472 * 21 19 18 23 23 C 1.50067 * 124.07628 * 359.55682 * 22 21 19 24 24 C 1.53021 * 110.03805 * 17.17714 * 23 22 21 25 25 C 1.53027 * 109.35983 * 185.69039 * 19 18 16 26 26 H 1.09002 * 109.46441 * 299.99639 * 1 2 3 27 27 H 1.09003 * 109.46872 * 59.99587 * 1 2 3 28 28 H 1.08995 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47012 * 294.99542 * 4 2 1 30 30 H 1.09000 * 109.47202 * 55.00103 * 4 2 1 31 31 H 1.08992 * 109.47300 * 94.52857 * 6 5 4 32 32 H 1.09002 * 109.46804 * 214.52871 * 6 5 4 33 33 H 1.08995 * 109.47061 * 334.52619 * 6 5 4 34 34 H 0.97000 * 119.99823 * 180.02562 * 10 9 7 35 35 H 0.97001 * 119.99924 * 265.00037 * 15 2 1 36 36 H 1.08998 * 109.47272 * 59.99971 * 18 16 15 37 37 H 1.08997 * 109.47337 * 299.99773 * 18 16 15 38 38 H 1.08003 * 117.96300 * 317.31973 * 21 19 18 39 39 H 1.08000 * 117.96263 * 179.53175 * 22 21 19 40 40 H 1.09002 * 109.35708 * 137.31891 * 23 22 21 41 41 H 1.09002 * 109.35604 * 257.03391 * 23 22 21 42 42 H 1.08999 * 109.64215 * 70.17404 * 24 23 22 43 43 H 1.08998 * 109.64391 * 190.81401 * 24 23 22 44 44 H 1.09007 * 109.63817 * 310.04517 * 25 19 18 45 45 H 1.09004 * 109.64279 * 70.45748 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9921 0.5609 7 6 4.2799 0.1647 1.7239 8 1 3.8835 0.8068 2.4964 9 6 5.5800 0.3440 1.2717 10 7 5.9918 -0.2795 0.1882 11 14 6.7451 1.4703 2.2009 12 1 6.0440 2.0468 3.3762 13 1 7.9238 0.6928 2.6607 14 1 7.1938 2.5663 1.3050 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1585 -2.4117 18 6 2.6498 -0.7284 -3.5875 19 6 2.7006 0.2547 -4.7589 20 1 1.7206 0.7151 -4.8844 21 6 3.7174 1.3200 -4.4705 22 6 4.5625 1.7707 -5.3412 23 6 4.6500 1.2842 -6.7581 24 6 3.3718 0.5315 -7.1339 25 6 3.0745 -0.4985 -6.0374 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7517 -0.1584 2.1369 30 1 1.6054 -1.7199 1.2950 31 1 4.3532 -1.7643 -0.4804 32 1 5.0472 -2.2389 1.0884 33 1 3.4427 -2.8401 0.6066 34 1 6.9004 -0.1544 -0.1275 35 1 2.2490 -1.6317 -1.1528 36 1 1.9776 -1.5506 -3.8327 37 1 3.6491 -1.1202 -3.3981 38 1 3.7456 1.7368 -3.4745 39 1 5.2470 2.5454 -5.0286 40 1 4.7768 2.1365 -7.4256 41 1 5.5055 0.6162 -6.8586 42 1 2.5425 1.2344 -7.2130 43 1 3.5143 0.0195 -8.0855 44 1 3.9586 -1.1102 -5.8570 45 1 2.2446 -1.1355 -6.3434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716484168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:46 Heat of formation + Delta-G solvation = -39.044571 kcal Electronic energy + Delta-G solvation = -23074.829649 eV Core-core repulsion = 19898.613912 eV Total energy + Delta-G solvation = -3176.215736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.97222 -39.27481 -37.92624 -35.70748 -33.71407 -33.00880 -31.86393 -31.69573 -28.10930 -27.91703 -27.39148 -23.96616 -23.21681 -22.95905 -21.67521 -21.08183 -18.85684 -18.76673 -17.92518 -17.16111 -16.84305 -16.66262 -16.18395 -15.53357 -15.30216 -15.06831 -14.93193 -14.58087 -14.26995 -13.77758 -13.74198 -13.53681 -13.47104 -13.17712 -13.06219 -12.98553 -12.83440 -12.68016 -12.52939 -12.33775 -12.27408 -12.03332 -11.82542 -11.72063 -11.68319 -11.38037 -11.01927 -10.66608 -10.51472 -9.89033 -9.80950 -8.71110 -7.82848 -5.28688 1.39931 1.41130 1.42637 1.50979 1.87412 2.46914 2.53822 3.31256 3.70881 3.77041 3.81887 3.94165 4.06734 4.21806 4.30764 4.40898 4.45056 4.51364 4.54536 4.57963 4.71956 4.76738 4.79856 4.85408 4.88063 4.92137 4.93152 5.01206 5.07472 5.10927 5.22131 5.24539 5.37046 5.39534 5.44419 5.52061 5.64735 5.76931 5.79492 5.84474 6.11336 6.34186 6.80353 7.17972 7.51486 7.90172 8.30549 9.19096 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.005609 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.269207 B = 4990.894488 C = 6192.327888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 H 0.030 0.970 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.175 3.825 7 C -0.260 4.260 8 H 0.064 0.936 9 C -0.048 4.048 10 N -0.926 5.926 11 Si 0.956 3.044 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.302 1.302 15 N -0.698 5.698 16 C 0.506 3.494 17 O -0.593 6.593 18 C -0.125 4.125 19 C -0.034 4.034 20 H 0.073 0.927 21 C -0.150 4.150 22 C -0.172 4.172 23 C -0.086 4.086 24 C -0.116 4.116 25 C -0.110 4.110 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.013 0.987 32 H 0.010 0.990 33 H 0.037 0.963 34 H 0.243 0.757 35 H 0.403 0.597 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -5.447 -11.900 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.049 0.951 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.030 3.970 7 C -0.390 4.390 8 H 0.082 0.918 9 C -0.243 4.243 10 N -0.573 5.573 11 Si 0.785 3.215 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.230 1.230 15 N -0.347 5.347 16 C 0.294 3.706 17 O -0.475 6.475 18 C -0.165 4.165 19 C -0.053 4.053 20 H 0.091 0.909 21 C -0.168 4.168 22 C -0.190 4.190 23 C -0.122 4.122 24 C -0.154 4.154 25 C -0.147 4.147 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.238 0.762 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.672 -4.645 -11.944 15.473 hybrid contribution 1.362 0.907 0.967 1.900 sum -7.310 -3.738 -10.977 13.708 Atomic orbital electron populations 1.21999 0.93780 1.02790 1.01680 1.21598 0.93956 0.96181 0.86809 0.95145 1.21357 0.83279 0.99201 0.94567 1.44084 1.00854 1.20461 1.67989 1.20629 0.94226 0.86058 0.96089 1.19470 0.95068 1.10640 1.13843 0.91815 1.25648 1.00414 1.00859 0.97408 1.70181 1.16764 1.47077 1.23243 0.85369 0.79451 0.78434 0.78219 1.19248 1.21434 1.22972 1.45829 1.65915 1.13960 1.09032 1.21191 0.76492 0.87024 0.85907 1.90608 1.52798 1.17893 1.86151 1.21712 1.03465 0.99734 0.91566 1.19784 0.97619 0.93402 0.94481 0.90856 1.22114 0.97720 0.98907 0.98098 1.22224 0.98945 1.00676 0.97127 1.20486 0.99202 1.00479 0.92069 1.21598 0.97037 0.97895 0.98843 1.21674 1.02536 0.97642 0.92872 0.90841 0.94274 0.90444 0.92196 0.90516 0.96851 0.97161 0.94449 0.94745 0.76154 0.85504 0.89406 0.91986 0.89474 0.90063 0.90198 0.92171 0.89146 0.91380 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.48 71.98 0.68 -3.47 16 2 C 0.12 4.61 2.88 44.99 0.13 4.74 16 3 H 0.03 1.47 7.58 -2.39 -0.02 1.45 16 4 C 0.14 5.34 5.33 86.38 0.46 5.81 16 5 N -0.61 -29.18 2.78 -726.95 -2.02 -31.20 16 6 C 0.17 7.95 7.61 127.77 0.97 8.92 16 7 C -0.26 -14.29 9.66 84.03 0.81 -13.48 16 8 H 0.06 3.48 7.85 -2.91 -0.02 3.46 16 9 C -0.05 -2.71 5.13 84.86 0.44 -2.27 16 10 N -0.93 -54.56 10.66 21.65 0.23 -54.33 16 11 Si 0.96 46.61 29.57 68.60 2.03 48.64 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 15 N -0.70 -25.07 4.41 -442.53 -1.95 -27.03 16 16 C 0.51 19.33 7.43 87.66 0.65 19.98 16 17 O -0.59 -27.47 13.95 -3.04 -0.04 -27.51 16 18 C -0.13 -3.63 5.13 29.85 0.15 -3.47 16 19 C -0.03 -0.98 2.11 -11.73 -0.02 -1.01 16 20 H 0.07 2.23 7.94 -2.39 -0.02 2.21 16 21 C -0.15 -5.35 8.42 27.04 0.23 -5.12 16 22 C -0.17 -5.28 9.80 27.04 0.27 -5.02 16 23 C -0.09 -1.87 6.12 29.66 0.18 -1.69 16 24 C -0.12 -2.18 6.00 30.72 0.18 -1.99 16 25 C -0.11 -2.23 5.31 30.72 0.16 -2.07 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.21 8.03 -2.39 -0.02 2.19 16 30 H 0.08 2.35 7.86 -2.39 -0.02 2.33 16 31 H 0.01 0.65 6.90 -2.39 -0.02 0.64 16 32 H 0.01 0.50 7.30 -2.39 -0.02 0.48 16 33 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 34 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.40 12.79 7.17 -92.71 -0.66 12.12 16 36 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.06 2.84 6.53 -2.91 -0.02 2.82 16 39 H 0.09 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.39 8.10 -2.38 -0.02 1.37 16 45 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.13 353.96 3.82 -67.31 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.28 Total: 24.26 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.29 Total: -0.14 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -3.74 Total: -112.56 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.04 Total: -27.51 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -71.13 3.82 -67.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716484168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.265 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds