Wall clock time and date at job start Fri Apr 10 2020 17:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47389 * 2 1 4 4 C 1.52995 * 109.47075 * 239.99074 * 2 1 3 5 5 N 1.46504 * 109.47197 * 185.00454 * 4 2 1 6 6 C 1.46507 * 119.99679 * 270.00631 * 5 4 2 7 7 C 1.36935 * 120.00126 * 90.00123 * 5 4 2 8 8 H 1.07999 * 119.99787 * 339.28853 * 7 5 4 9 9 C 1.38810 * 119.99783 * 159.29334 * 7 5 4 10 10 N 1.31619 * 120.00215 * 341.24725 * 9 7 5 11 11 Si 1.86800 * 119.99815 * 160.98045 * 9 7 5 12 12 H 1.48493 * 109.47584 * 84.98676 * 11 9 7 13 13 H 1.48506 * 109.47010 * 204.98887 * 11 9 7 14 14 H 1.48497 * 109.47153 * 324.98255 * 11 9 7 15 15 N 1.46504 * 109.46593 * 119.99686 * 2 1 3 16 16 C 1.34778 * 119.99699 * 274.99510 * 15 2 1 17 17 O 1.21281 * 120.00189 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99992 * 179.97438 * 16 15 2 19 19 H 1.09003 * 115.55420 * 11.81041 * 18 16 15 20 20 C 1.53084 * 117.51110 * 157.52326 * 18 16 15 21 21 C 1.52552 * 117.51463 * 226.02687 * 18 16 15 22 22 C 1.53872 * 120.82725 * 142.33735 * 21 18 16 23 23 C 1.54994 * 104.05974 * 192.35274 * 22 21 18 24 24 C 1.54916 * 102.82043 * 37.56947 * 23 22 21 25 25 C 1.53485 * 121.08841 * 2.96498 * 21 18 16 26 26 H 1.08992 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47297 * 300.00950 * 1 2 3 28 28 H 1.09002 * 109.46541 * 60.00329 * 1 2 3 29 29 H 1.09003 * 109.46674 * 65.00734 * 4 2 1 30 30 H 1.09003 * 109.47514 * 305.00442 * 4 2 1 31 31 H 1.09005 * 109.46504 * 265.68484 * 6 5 4 32 32 H 1.08993 * 109.47154 * 25.68367 * 6 5 4 33 33 H 1.08999 * 109.46858 * 145.68892 * 6 5 4 34 34 H 0.96994 * 120.00317 * 179.73460 * 10 9 7 35 35 H 0.97001 * 120.00365 * 95.00220 * 15 2 1 36 36 H 1.09000 * 117.51560 * 214.91508 * 20 18 16 37 37 H 1.09006 * 117.51120 * 359.97438 * 20 18 16 38 38 H 1.08998 * 110.51053 * 311.00056 * 22 21 18 39 39 H 1.08998 * 110.50909 * 73.70972 * 22 21 18 40 40 H 1.09004 * 110.74192 * 279.23459 * 23 22 21 41 41 H 1.09000 * 110.74140 * 155.90256 * 23 22 21 42 42 H 1.09003 * 110.48531 * 203.59330 * 24 23 22 43 43 H 1.09004 * 110.59561 * 81.01678 * 24 23 22 44 44 H 1.09005 * 110.06616 * 263.32005 * 25 21 18 45 45 H 1.08999 * 110.07249 * 24.84750 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8267 -1.1904 6 6 4.3344 0.2338 -1.7611 7 6 4.0849 -1.9161 -0.6020 8 1 3.5241 -2.5179 0.0977 9 6 5.3986 -2.2467 -0.9048 10 7 5.9621 -1.7719 -1.9954 11 14 6.3691 -3.3596 0.2393 12 1 6.0851 -4.7790 -0.0920 13 1 7.8209 -3.0938 0.0746 14 1 5.9731 -3.0906 1.6450 15 7 2.0183 -0.6906 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8582 1.1586 2.4116 18 6 2.6486 -0.7285 3.5879 19 1 3.0731 -1.7183 3.4193 20 6 3.2689 0.1275 4.6951 21 6 1.8916 -0.4985 4.8922 22 6 1.6843 -1.6458 5.8965 23 6 0.6273 -1.0933 6.8863 24 6 -0.3183 -0.2845 5.9634 25 6 0.6260 0.3689 4.9316 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.7517 -0.1585 -2.1369 30 1 1.6053 -1.7200 -1.2949 31 1 4.6061 -0.0285 -2.7837 32 1 3.7796 1.1719 -1.7618 33 1 5.2384 0.3466 -1.1626 34 1 6.8813 -1.9999 -2.2050 35 1 2.2490 -1.6318 1.1528 36 1 4.1008 -0.2993 5.2554 37 1 3.3145 1.2045 4.5331 38 1 1.3058 -2.5333 5.3895 39 1 2.6150 -1.8701 6.4175 40 1 1.0940 -0.4430 7.6262 41 1 0.0896 -1.9080 7.3713 42 1 -0.8469 0.4792 6.5340 43 1 -1.0272 -0.9465 5.4659 44 1 0.8770 1.3827 5.2437 45 1 0.1532 0.3856 3.9497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716502454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:03 Heat of formation + Delta-G solvation = -7.038301 kcal Electronic energy + Delta-G solvation = -23085.952372 eV Core-core repulsion = 19911.124531 eV Total energy + Delta-G solvation = -3174.827840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.05408 -38.15751 -36.26042 -34.14395 -33.82154 -31.34602 -30.10047 -28.75967 -26.21211 -25.70774 -25.61387 -24.00222 -21.68557 -20.87671 -20.13394 -19.72418 -18.64332 -16.94157 -16.33293 -15.82634 -15.48645 -15.01748 -14.96094 -14.19873 -13.90499 -13.73763 -13.31361 -13.14105 -12.93383 -12.70867 -12.49462 -12.10240 -11.93270 -11.89857 -11.61989 -11.18061 -11.08160 -11.06488 -10.93722 -10.89097 -10.79451 -10.63678 -10.42333 -10.32995 -10.10043 -10.03117 -9.87897 -9.69630 -9.17326 -8.55175 -8.34628 -6.78166 -5.76726 -3.18985 2.93682 3.33956 3.41380 3.42200 3.72873 4.07039 4.46065 4.48089 4.62347 4.87042 4.95097 5.12416 5.19027 5.30884 5.43150 5.45663 5.49563 5.57994 5.62618 5.71935 5.75144 5.82052 5.86496 5.90636 5.93019 5.95888 6.08067 6.13101 6.15952 6.20967 6.23839 6.29738 6.38646 6.48241 6.48566 6.75122 6.84289 7.20417 7.34795 7.65117 7.73364 8.22190 8.33847 8.86517 9.18344 9.83745 10.33514 11.28362 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.005434 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.272326 B = 5151.381628 C = 6235.633229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.162 3.838 7 C -0.252 4.252 8 H 0.064 0.936 9 C 0.004 3.996 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 N -0.692 5.692 16 C 0.545 3.455 17 O -0.559 6.559 18 C -0.178 4.178 19 H 0.117 0.883 20 C -0.135 4.135 21 C -0.099 4.099 22 C -0.090 4.090 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.084 4.084 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.029 0.971 32 H -0.001 1.001 33 H 0.039 0.961 34 H 0.253 0.747 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 1.041 13.019 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.382 4.382 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.545 5.545 11 Si 0.726 3.274 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.206 1.206 15 N -0.341 5.341 16 C 0.331 3.669 17 O -0.439 6.439 18 C -0.199 4.199 19 H 0.135 0.865 20 C -0.172 4.172 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.121 4.121 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.239 0.761 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.480 1.848 12.920 16.739 hybrid contribution 0.974 -1.137 0.371 1.542 sum -9.506 0.711 13.291 16.356 Atomic orbital electron populations 1.22119 0.96645 1.01358 1.01534 1.21841 0.92108 0.98242 0.86754 0.90609 1.21056 0.86080 0.98242 0.93325 1.43832 0.98897 1.20945 1.68311 1.20755 0.92994 0.86396 0.98108 1.18950 0.96041 1.05089 1.18091 0.91792 1.24904 0.98823 0.99183 0.96577 1.70095 1.13552 1.47910 1.22900 0.86425 0.79735 0.80353 0.80927 1.21401 1.21593 1.20630 1.45874 1.65280 1.14300 1.08693 1.19412 0.77192 0.86526 0.83767 1.90612 1.51891 1.15981 1.85400 1.22342 1.06395 1.01822 0.89322 0.86464 1.22995 0.95150 0.99906 0.99166 1.21710 0.93830 0.99125 0.95293 1.21935 0.99156 0.96349 0.95338 1.22459 0.96726 0.99288 0.97356 1.22380 0.97587 0.99134 0.97077 1.21586 0.92961 0.98006 0.99545 0.92939 0.92982 0.92183 0.93086 0.93032 0.95276 0.98235 0.94201 0.93728 0.76139 0.88299 0.87734 0.91030 0.91441 0.91455 0.91672 0.91808 0.91776 0.91364 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 2 C 0.12 2.14 2.88 -67.93 -0.20 1.94 16 3 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 4 C 0.14 2.77 5.30 -4.04 -0.02 2.75 16 5 N -0.60 -14.47 2.82 -181.11 -0.51 -14.98 16 6 C 0.16 4.01 9.00 59.85 0.54 4.55 16 7 C -0.25 -6.51 8.80 -15.06 -0.13 -6.64 16 8 H 0.06 1.55 6.30 -52.49 -0.33 1.22 16 9 C 0.00 0.11 4.97 -17.43 -0.09 0.02 16 10 N -0.90 -25.91 10.93 55.49 0.61 -25.31 16 11 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 N -0.69 -12.61 4.49 -53.80 -0.24 -12.85 16 16 C 0.54 10.01 6.82 -10.98 -0.07 9.93 16 17 O -0.56 -11.57 14.74 5.56 0.08 -11.49 16 18 C -0.18 -2.74 6.05 -91.96 -0.56 -3.30 16 19 H 0.12 1.74 8.14 -51.93 -0.42 1.31 16 20 C -0.13 -1.88 9.75 -26.91 -0.26 -2.14 16 21 C -0.10 -1.28 2.43 -154.25 -0.38 -1.66 16 22 C -0.09 -0.95 6.58 -25.22 -0.17 -1.12 16 23 C -0.12 -1.11 6.91 -24.67 -0.17 -1.28 16 24 C -0.12 -1.26 6.84 -25.00 -0.17 -1.43 16 25 C -0.08 -1.08 5.65 -25.76 -0.15 -1.23 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 31 H 0.03 0.77 7.43 -51.93 -0.39 0.38 16 32 H 0.00 -0.02 8.04 -51.93 -0.42 -0.44 16 33 H 0.04 1.07 7.29 -51.93 -0.38 0.69 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.40 7.24 6.53 -40.82 -0.27 6.98 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.58 7.85 -51.93 -0.41 1.18 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.05 6.82 -51.93 -0.35 0.70 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -30.02 355.29 -9.18 -39.20 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.98 Total: 5.52 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.47 Total: -1.61 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.15 Total: -53.13 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.02 -9.18 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716502454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.163 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds