Wall clock time and date at job start Fri Apr 10 2020 17:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47389 * 2 1 4 4 C 1.52995 * 109.47075 * 239.99074 * 2 1 3 5 5 N 1.46504 * 109.47197 * 185.00454 * 4 2 1 6 6 C 1.46507 * 119.99679 * 270.00631 * 5 4 2 7 7 C 1.36935 * 120.00126 * 90.00123 * 5 4 2 8 8 H 1.07999 * 119.99787 * 339.28853 * 7 5 4 9 9 C 1.38810 * 119.99783 * 159.29334 * 7 5 4 10 10 N 1.31619 * 120.00215 * 341.24725 * 9 7 5 11 11 Si 1.86800 * 119.99815 * 160.98045 * 9 7 5 12 12 H 1.48493 * 109.47584 * 84.98676 * 11 9 7 13 13 H 1.48506 * 109.47010 * 204.98887 * 11 9 7 14 14 H 1.48497 * 109.47153 * 324.98255 * 11 9 7 15 15 N 1.46504 * 109.46593 * 119.99686 * 2 1 3 16 16 C 1.34778 * 119.99699 * 274.99510 * 15 2 1 17 17 O 1.21281 * 120.00189 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99992 * 179.97438 * 16 15 2 19 19 H 1.09003 * 115.55420 * 11.81041 * 18 16 15 20 20 C 1.53084 * 117.51110 * 157.52326 * 18 16 15 21 21 C 1.52552 * 117.51463 * 226.02687 * 18 16 15 22 22 C 1.53872 * 120.82725 * 142.33735 * 21 18 16 23 23 C 1.54994 * 104.05974 * 192.35274 * 22 21 18 24 24 C 1.54916 * 102.82043 * 37.56947 * 23 22 21 25 25 C 1.53485 * 121.08841 * 2.96498 * 21 18 16 26 26 H 1.08992 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47297 * 300.00950 * 1 2 3 28 28 H 1.09002 * 109.46541 * 60.00329 * 1 2 3 29 29 H 1.09003 * 109.46674 * 65.00734 * 4 2 1 30 30 H 1.09003 * 109.47514 * 305.00442 * 4 2 1 31 31 H 1.09005 * 109.46504 * 265.68484 * 6 5 4 32 32 H 1.08993 * 109.47154 * 25.68367 * 6 5 4 33 33 H 1.08999 * 109.46858 * 145.68892 * 6 5 4 34 34 H 0.96994 * 120.00317 * 179.73460 * 10 9 7 35 35 H 0.97001 * 120.00365 * 95.00220 * 15 2 1 36 36 H 1.09000 * 117.51560 * 214.91508 * 20 18 16 37 37 H 1.09006 * 117.51120 * 359.97438 * 20 18 16 38 38 H 1.08998 * 110.51053 * 311.00056 * 22 21 18 39 39 H 1.08998 * 110.50909 * 73.70972 * 22 21 18 40 40 H 1.09004 * 110.74192 * 279.23459 * 23 22 21 41 41 H 1.09000 * 110.74140 * 155.90256 * 23 22 21 42 42 H 1.09003 * 110.48531 * 203.59330 * 24 23 22 43 43 H 1.09004 * 110.59561 * 81.01678 * 24 23 22 44 44 H 1.09005 * 110.06616 * 263.32005 * 25 21 18 45 45 H 1.08999 * 110.07249 * 24.84750 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8267 -1.1904 6 6 4.3344 0.2338 -1.7611 7 6 4.0849 -1.9161 -0.6020 8 1 3.5241 -2.5179 0.0977 9 6 5.3986 -2.2467 -0.9048 10 7 5.9621 -1.7719 -1.9954 11 14 6.3691 -3.3596 0.2393 12 1 6.0851 -4.7790 -0.0920 13 1 7.8209 -3.0938 0.0746 14 1 5.9731 -3.0906 1.6450 15 7 2.0183 -0.6906 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8582 1.1586 2.4116 18 6 2.6486 -0.7285 3.5879 19 1 3.0731 -1.7183 3.4193 20 6 3.2689 0.1275 4.6951 21 6 1.8916 -0.4985 4.8922 22 6 1.6843 -1.6458 5.8965 23 6 0.6273 -1.0933 6.8863 24 6 -0.3183 -0.2845 5.9634 25 6 0.6260 0.3689 4.9316 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.7517 -0.1585 -2.1369 30 1 1.6053 -1.7200 -1.2949 31 1 4.6061 -0.0285 -2.7837 32 1 3.7796 1.1719 -1.7618 33 1 5.2384 0.3466 -1.1626 34 1 6.8813 -1.9999 -2.2050 35 1 2.2490 -1.6318 1.1528 36 1 4.1008 -0.2993 5.2554 37 1 3.3145 1.2045 4.5331 38 1 1.3058 -2.5333 5.3895 39 1 2.6150 -1.8701 6.4175 40 1 1.0940 -0.4430 7.6262 41 1 0.0896 -1.9080 7.3713 42 1 -0.8469 0.4792 6.5340 43 1 -1.0272 -0.9465 5.4659 44 1 0.8770 1.3827 5.2437 45 1 0.1532 0.3856 3.9497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716502454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:02 Heat of formation + Delta-G solvation = -23.469832 kcal Electronic energy + Delta-G solvation = -23086.664896 eV Core-core repulsion = 19911.124531 eV Total energy + Delta-G solvation = -3175.540365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31904 -39.40435 -37.90042 -35.73590 -34.97676 -33.16707 -31.67719 -29.63737 -28.08712 -27.40715 -26.68002 -25.26598 -23.45024 -21.82903 -21.52620 -21.11222 -19.78018 -18.70572 -17.83597 -17.12415 -16.92910 -16.44676 -16.06817 -15.74581 -15.41989 -15.24617 -14.92654 -14.57472 -14.21861 -13.87098 -13.75564 -13.51322 -13.29954 -13.13151 -13.06135 -12.83828 -12.67340 -12.56355 -12.24271 -12.06077 -12.02437 -11.95249 -11.88903 -11.81929 -11.79512 -11.41722 -11.20276 -10.89021 -10.57818 -10.51413 -9.83725 -8.77774 -7.81022 -5.24870 1.46498 1.49874 1.56492 1.59204 2.37913 2.52757 2.90145 3.32829 3.47952 3.67044 3.69774 3.84010 3.92311 4.03519 4.17860 4.28611 4.32494 4.40403 4.50211 4.56607 4.73433 4.73777 4.76475 4.80855 4.86078 4.87110 4.89548 4.97420 5.02155 5.07921 5.11859 5.15996 5.22684 5.25359 5.28015 5.39495 5.42163 5.49496 5.59931 5.65848 5.77012 6.31783 6.76529 7.14055 7.43114 7.87393 8.33905 9.23448 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.005434 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.272326 B = 5151.381628 C = 6235.633229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.125 3.875 3 H 0.048 0.952 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.177 3.823 7 C -0.246 4.246 8 H 0.081 0.919 9 C -0.056 4.056 10 N -0.938 5.938 11 Si 0.956 3.044 12 H -0.281 1.281 13 H -0.303 1.303 14 H -0.267 1.267 15 N -0.694 5.694 16 C 0.539 3.461 17 O -0.590 6.590 18 C -0.197 4.197 19 H 0.126 0.874 20 C -0.136 4.136 21 C -0.084 4.084 22 C -0.089 4.089 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.087 4.087 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.022 0.978 33 H 0.009 0.991 34 H 0.245 0.755 35 H 0.404 0.596 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 -0.319 15.130 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.066 0.934 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.032 3.968 7 C -0.376 4.376 8 H 0.099 0.901 9 C -0.251 4.251 10 N -0.585 5.585 11 Si 0.785 3.215 12 H -0.208 1.208 13 H -0.230 1.230 14 H -0.191 1.191 15 N -0.343 5.343 16 C 0.327 3.673 17 O -0.472 6.472 18 C -0.218 4.218 19 H 0.144 0.856 20 C -0.174 4.174 21 C -0.085 4.085 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.124 4.124 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.054 0.946 35 H 0.240 0.760 36 H 0.139 0.861 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.008 0.476 15.050 19.259 hybrid contribution 1.355 -0.636 -0.323 1.531 sum -10.653 -0.160 14.727 18.176 Atomic orbital electron populations 1.21997 0.93798 1.02558 1.02049 1.21648 0.94187 0.96282 0.86082 0.93401 1.21228 0.83395 0.99276 0.94568 1.44071 1.00821 1.20385 1.68202 1.20471 0.92419 0.87730 0.96203 1.19398 0.96109 1.04702 1.17408 0.90129 1.25665 1.00114 1.01359 0.97929 1.70256 1.13297 1.50210 1.24784 0.85456 0.77471 0.78823 0.79780 1.20792 1.23025 1.19144 1.45920 1.65319 1.14301 1.08800 1.19924 0.76554 0.86289 0.84549 1.90590 1.53278 1.17361 1.85944 1.22364 1.08440 1.02107 0.88913 0.85643 1.23060 0.96826 0.98821 0.98670 1.21880 0.93099 0.99663 0.93858 1.22006 1.00368 0.95333 0.94907 1.22466 0.96078 0.99764 0.96900 1.22372 0.97310 0.99508 0.96555 1.21593 0.93679 0.97994 0.99141 0.91338 0.93897 0.90243 0.91685 0.91939 0.97507 0.95909 0.97218 0.94601 0.75960 0.86051 0.89612 0.90493 0.90136 0.90807 0.89656 0.90648 0.91402 0.92393 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.48 71.98 0.68 -3.38 16 2 C 0.13 4.43 2.88 44.99 0.13 4.56 16 3 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 4 C 0.14 5.37 5.30 86.38 0.46 5.83 16 5 N -0.61 -29.46 2.82 -726.92 -2.05 -31.51 16 6 C 0.18 8.92 9.00 127.77 1.15 10.07 16 7 C -0.25 -12.56 8.80 84.03 0.74 -11.82 16 8 H 0.08 3.77 6.30 -2.91 -0.02 3.75 16 9 C -0.06 -3.03 4.97 84.86 0.42 -2.61 16 10 N -0.94 -55.23 10.93 21.65 0.24 -54.99 16 11 Si 0.96 43.54 29.59 68.60 2.03 45.57 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 15 N -0.69 -24.82 4.49 -442.53 -1.99 -26.81 16 16 C 0.54 19.78 6.82 87.66 0.60 20.38 16 17 O -0.59 -24.92 14.74 -3.03 -0.04 -24.97 16 18 C -0.20 -5.90 6.05 -11.66 -0.07 -5.97 16 19 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 20 C -0.14 -3.67 9.75 30.48 0.30 -3.38 16 21 C -0.08 -2.06 2.43 -52.02 -0.13 -2.19 16 22 C -0.09 -1.59 6.58 31.57 0.21 -1.38 16 23 C -0.11 -1.72 6.91 31.93 0.22 -1.49 16 24 C -0.12 -2.16 6.84 31.72 0.22 -1.94 16 25 C -0.09 -2.18 5.65 31.23 0.18 -2.00 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 2.28 8.07 -2.39 -0.02 2.27 16 30 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 31 H 0.01 0.36 7.43 -2.38 -0.02 0.35 16 32 H 0.02 1.00 8.04 -2.39 -0.02 0.98 16 33 H 0.01 0.51 7.29 -2.39 -0.02 0.49 16 34 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.40 14.02 6.53 -92.71 -0.61 13.42 16 36 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.09 2.63 7.85 -2.38 -0.02 2.61 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.27 8.11 -2.39 -0.02 1.25 16 40 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.04 1.34 6.82 -2.39 -0.02 1.32 16 Total: -1.00 -65.60 355.29 3.64 -61.96 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.35 Total: 26.06 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.10 Total: 4.68 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -3.80 Total: -113.31 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -65.60 3.64 -61.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716502454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.495 kcal (2) G-P(sol) polarization free energy of solvation -65.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds