Wall clock time and date at job start Fri Apr 10 2020 17:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46640 * 2 1 4 4 C 1.36931 * 120.00384 * 275.23531 * 3 2 1 5 5 H 1.08007 * 119.99789 * 37.71234 * 4 3 2 6 6 C 1.38809 * 120.00420 * 217.71201 * 4 3 2 7 7 N 1.31619 * 119.99781 * 21.63737 * 6 4 3 8 8 Si 1.86799 * 120.00239 * 201.64254 * 6 4 3 9 9 H 1.48497 * 109.47180 * 59.99675 * 8 6 4 10 10 H 1.48499 * 109.47327 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46896 * 299.99911 * 8 6 4 12 12 C 1.46505 * 119.99562 * 95.24249 * 3 2 1 13 13 C 1.53002 * 109.46780 * 269.99447 * 12 3 2 14 14 C 1.53042 * 109.45755 * 175.00590 * 13 12 3 15 15 C 1.53191 * 109.31298 * 181.38541 * 14 13 12 16 16 N 1.46928 * 108.77519 * 305.36398 * 15 14 13 17 17 C 1.34774 * 120.62697 * 233.58519 * 16 15 14 18 18 O 1.21284 * 120.00372 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99709 * 179.97438 * 17 16 15 20 20 C 1.53000 * 117.51815 * 111.28323 * 19 17 16 21 21 C 1.52998 * 117.49780 * 179.91302 * 19 17 16 22 22 C 1.46919 * 118.73793 * 53.85964 * 16 15 14 23 23 C 1.53037 * 109.46065 * 295.06813 * 13 12 3 24 24 H 1.09004 * 109.47436 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47418 * 299.99819 * 1 2 3 26 26 H 1.08997 * 109.47366 * 59.99997 * 1 2 3 27 27 H 1.08998 * 109.46893 * 240.00211 * 2 1 3 28 28 H 1.08992 * 109.46946 * 120.00165 * 2 1 3 29 29 H 0.97004 * 120.00159 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46725 * 149.99831 * 12 3 2 31 31 H 1.08994 * 109.47437 * 29.99621 * 12 3 2 32 32 H 1.09001 * 109.45237 * 55.03817 * 13 12 3 33 33 H 1.08998 * 109.50555 * 61.43079 * 14 13 12 34 34 H 1.09006 * 109.49546 * 301.33370 * 14 13 12 35 35 H 1.09000 * 109.58741 * 185.56823 * 15 14 13 36 36 H 1.09003 * 109.58306 * 65.14903 * 15 14 13 37 37 H 1.08998 * 115.55194 * 325.58106 * 19 17 16 38 38 H 1.08997 * 117.50424 * 214.97087 * 20 19 17 39 39 H 1.09005 * 117.50139 * 359.97438 * 20 19 17 40 40 H 1.09002 * 117.49745 * 359.97438 * 21 19 17 41 41 H 1.08999 * 117.50244 * 145.00144 * 21 19 17 42 42 H 1.09000 * 109.59156 * 65.93067 * 22 16 15 43 43 H 1.09003 * 109.58603 * 186.35747 * 22 16 15 44 44 H 1.09005 * 109.50000 * 298.57042 * 23 13 12 45 45 H 1.09005 * 109.49765 * 58.66482 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.4116 1.9287 -1.9628 6 6 3.2141 2.9265 -1.3730 7 7 4.3069 2.7910 -0.6520 8 14 3.1026 4.2808 -2.6547 9 1 1.9690 5.1817 -2.3256 10 1 4.3669 5.0597 -2.6631 11 1 2.8832 3.6780 -3.9940 12 6 2.3716 2.0332 1.2635 13 6 1.1403 2.7390 1.8350 14 6 1.4759 3.3137 3.2131 15 6 0.2312 3.9894 3.7971 16 7 -0.2641 4.9820 2.8336 17 6 -0.4685 6.2603 3.2086 18 8 -0.2438 6.6006 4.3508 19 6 -0.9762 7.2668 2.2085 20 6 -2.3950 7.8047 2.4049 21 6 -1.1899 8.7012 2.6961 22 6 -0.5380 4.5531 1.4554 23 6 0.7206 3.8724 0.8963 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.0546 3.3942 -0.7865 30 1 3.1602 2.7646 1.0868 31 1 2.7231 1.2842 1.9730 32 1 0.3230 2.0239 1.9290 33 1 2.2764 4.0471 3.1165 34 1 1.7971 2.5090 3.8745 35 1 0.4896 4.4854 4.7327 36 1 -0.5397 3.2405 3.9790 37 1 -0.6271 7.1299 1.1851 38 1 -2.9794 8.0216 1.5108 39 1 -2.9617 7.4302 3.2575 40 1 -0.9636 8.9167 3.7404 41 1 -0.9814 9.5080 1.9935 42 1 -1.3703 3.8493 1.4502 43 1 -0.7871 5.4214 0.8452 44 1 1.5283 4.6006 0.8213 45 1 0.5043 3.4654 -0.0916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725024682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:13 Heat of formation + Delta-G solvation = 0.475718 kcal Electronic energy + Delta-G solvation = -23401.050140 eV Core-core repulsion = 20226.548132 eV Total energy + Delta-G solvation = -3174.502008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14849 -37.86635 -36.16368 -35.55750 -32.66921 -31.86984 -30.69637 -28.91952 -26.89003 -24.80125 -23.90891 -22.62227 -22.49000 -21.96243 -20.26887 -19.63464 -18.54196 -17.38285 -16.62314 -15.82445 -15.30778 -14.92326 -14.49304 -14.18658 -13.95236 -13.84365 -13.45787 -13.28698 -13.05292 -12.61191 -12.43900 -12.24223 -12.15054 -11.68683 -11.62922 -11.33879 -11.13398 -10.90546 -10.77752 -10.65055 -10.57262 -10.52299 -10.42422 -10.25250 -10.05332 -9.90801 -9.62559 -9.49291 -9.38432 -8.44715 -8.36189 -6.53771 -5.78580 -3.36474 2.60814 3.16076 3.32454 3.39637 3.40812 3.81437 4.45301 4.53314 4.70871 4.82188 5.01292 5.19157 5.28101 5.35206 5.42949 5.46775 5.55946 5.57471 5.68365 5.77404 5.80126 5.87543 5.96133 6.02273 6.03044 6.10915 6.29398 6.34874 6.38884 6.42513 6.52586 6.64231 6.73232 6.86463 6.91869 6.98112 7.01997 7.16265 7.26900 7.62570 7.73147 7.81138 8.34312 8.52291 9.20389 9.83132 10.42960 11.20381 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.005801 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.976832 B = 4825.436229 C = 5664.611860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.255 4.255 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.153 3.847 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.114 3.886 16 N -0.600 5.600 17 C 0.543 3.457 18 O -0.555 6.555 19 C -0.194 4.194 20 C -0.153 4.153 21 C -0.150 4.150 22 C 0.103 3.897 23 C -0.115 4.115 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.254 0.746 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 4.592 5.016 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.527 5.527 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.027 3.973 13 C -0.122 4.122 14 C -0.167 4.167 15 C -0.008 4.008 16 N -0.332 5.332 17 C 0.331 3.669 18 O -0.435 6.435 19 C -0.215 4.215 20 C -0.190 4.190 21 C -0.187 4.187 22 C -0.020 4.020 23 C -0.153 4.153 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.452 4.812 5.595 12.795 hybrid contribution 0.029 0.641 -0.843 1.059 sum -10.423 5.453 4.752 12.687 Atomic orbital electron populations 1.22367 1.00209 0.98791 1.01080 1.20822 0.91636 0.87563 0.98538 1.43751 1.76078 1.08068 1.02555 1.18843 1.04369 1.21129 0.94127 0.92492 1.25128 0.94242 1.01294 0.97760 1.69996 1.03041 1.37297 1.42378 0.86627 0.77029 0.82779 0.81946 1.20700 1.21717 1.20778 1.20937 0.94585 0.96266 0.85559 1.21805 1.01194 0.96727 0.92497 1.21953 0.96834 0.99869 0.98054 1.21611 0.96249 0.90469 0.92466 1.48087 1.64386 1.08497 1.12244 1.19605 0.77168 0.82275 0.87812 1.90639 1.53129 1.79135 1.20550 1.22261 1.02407 0.96206 1.00631 1.22896 0.89556 1.02899 1.03682 1.22928 1.00949 0.91477 1.03338 1.22114 0.99298 0.99596 0.80968 1.21966 0.95125 0.97346 1.00879 0.94795 0.93750 0.93319 0.94070 0.95033 0.93560 0.89017 0.96089 0.92642 0.91823 0.91427 0.89753 0.92031 0.85578 0.87903 0.88457 0.87568 0.88063 0.91774 0.90359 0.92405 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.21 37.16 0.38 -2.46 16 2 C 0.14 2.85 6.44 -4.04 -0.03 2.83 16 3 N -0.58 -13.48 2.31 -173.24 -0.40 -13.88 16 4 C -0.25 -6.43 7.35 -15.06 -0.11 -6.54 16 5 H 0.06 1.45 7.92 -52.48 -0.42 1.04 16 6 C 0.02 0.43 4.95 -17.43 -0.09 0.34 16 7 N -0.89 -24.53 11.50 55.49 0.64 -23.90 16 8 Si 0.89 20.55 29.61 -169.99 -5.03 15.52 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.15 3.34 4.84 -4.04 -0.02 3.32 16 13 C -0.10 -1.82 2.36 -90.58 -0.21 -2.04 16 14 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 15 C 0.11 1.73 6.43 -3.71 -0.02 1.70 16 16 N -0.60 -9.30 2.97 -172.50 -0.51 -9.81 16 17 C 0.54 8.72 7.48 -10.99 -0.08 8.64 16 18 O -0.56 -10.49 15.67 5.55 0.09 -10.40 16 19 C -0.19 -2.47 5.11 -91.77 -0.47 -2.94 16 20 C -0.15 -1.56 10.24 -26.73 -0.27 -1.84 16 21 C -0.15 -1.66 10.04 -26.73 -0.27 -1.93 16 22 C 0.10 1.50 6.37 -3.49 -0.02 1.48 16 23 C -0.12 -2.08 4.97 -26.39 -0.13 -2.21 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.75 6.47 -51.93 -0.34 0.41 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.03 0.61 7.83 -51.93 -0.41 0.20 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.09 2.32 5.54 -51.93 -0.29 2.03 16 31 H 0.02 0.45 7.86 -51.93 -0.41 0.04 16 32 H 0.06 0.98 6.47 -51.93 -0.34 0.65 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.33 7.01 -51.93 -0.36 0.96 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.13 1.50 6.58 -51.93 -0.34 1.16 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.11 1.31 7.67 -51.93 -0.40 0.91 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 1.03 5.52 -51.93 -0.29 0.74 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.10 1.98 6.26 -51.93 -0.32 1.66 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -28.70 348.45 -9.15 -37.85 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.69 Total: 3.23 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.49 Total: -3.86 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.27 Total: -47.58 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.70 -9.15 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725024682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.324 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds