Wall clock time and date at job start Fri Apr 10 2020 17:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46640 * 2 1 4 4 C 1.36931 * 120.00384 * 275.23531 * 3 2 1 5 5 H 1.08007 * 119.99789 * 37.71234 * 4 3 2 6 6 C 1.38809 * 120.00420 * 217.71201 * 4 3 2 7 7 N 1.31619 * 119.99781 * 21.63737 * 6 4 3 8 8 Si 1.86799 * 120.00239 * 201.64254 * 6 4 3 9 9 H 1.48497 * 109.47180 * 59.99675 * 8 6 4 10 10 H 1.48499 * 109.47327 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46896 * 299.99911 * 8 6 4 12 12 C 1.46505 * 119.99562 * 95.24249 * 3 2 1 13 13 C 1.53002 * 109.46780 * 269.99447 * 12 3 2 14 14 C 1.53042 * 109.45755 * 175.00590 * 13 12 3 15 15 C 1.53191 * 109.31298 * 181.38541 * 14 13 12 16 16 N 1.46928 * 108.77519 * 305.36398 * 15 14 13 17 17 C 1.34774 * 120.62697 * 233.58519 * 16 15 14 18 18 O 1.21284 * 120.00372 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99709 * 179.97438 * 17 16 15 20 20 C 1.53000 * 117.51815 * 111.28323 * 19 17 16 21 21 C 1.52998 * 117.49780 * 179.91302 * 19 17 16 22 22 C 1.46919 * 118.73793 * 53.85964 * 16 15 14 23 23 C 1.53037 * 109.46065 * 295.06813 * 13 12 3 24 24 H 1.09004 * 109.47436 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47418 * 299.99819 * 1 2 3 26 26 H 1.08997 * 109.47366 * 59.99997 * 1 2 3 27 27 H 1.08998 * 109.46893 * 240.00211 * 2 1 3 28 28 H 1.08992 * 109.46946 * 120.00165 * 2 1 3 29 29 H 0.97004 * 120.00159 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46725 * 149.99831 * 12 3 2 31 31 H 1.08994 * 109.47437 * 29.99621 * 12 3 2 32 32 H 1.09001 * 109.45237 * 55.03817 * 13 12 3 33 33 H 1.08998 * 109.50555 * 61.43079 * 14 13 12 34 34 H 1.09006 * 109.49546 * 301.33370 * 14 13 12 35 35 H 1.09000 * 109.58741 * 185.56823 * 15 14 13 36 36 H 1.09003 * 109.58306 * 65.14903 * 15 14 13 37 37 H 1.08998 * 115.55194 * 325.58106 * 19 17 16 38 38 H 1.08997 * 117.50424 * 214.97087 * 20 19 17 39 39 H 1.09005 * 117.50139 * 359.97438 * 20 19 17 40 40 H 1.09002 * 117.49745 * 359.97438 * 21 19 17 41 41 H 1.08999 * 117.50244 * 145.00144 * 21 19 17 42 42 H 1.09000 * 109.59156 * 65.93067 * 22 16 15 43 43 H 1.09003 * 109.58603 * 186.35747 * 22 16 15 44 44 H 1.09005 * 109.50000 * 298.57042 * 23 13 12 45 45 H 1.09005 * 109.49765 * 58.66482 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.4116 1.9287 -1.9628 6 6 3.2141 2.9265 -1.3730 7 7 4.3069 2.7910 -0.6520 8 14 3.1026 4.2808 -2.6547 9 1 1.9690 5.1817 -2.3256 10 1 4.3669 5.0597 -2.6631 11 1 2.8832 3.6780 -3.9940 12 6 2.3716 2.0332 1.2635 13 6 1.1403 2.7390 1.8350 14 6 1.4759 3.3137 3.2131 15 6 0.2312 3.9894 3.7971 16 7 -0.2641 4.9820 2.8336 17 6 -0.4685 6.2603 3.2086 18 8 -0.2438 6.6006 4.3508 19 6 -0.9762 7.2668 2.2085 20 6 -2.3950 7.8047 2.4049 21 6 -1.1899 8.7012 2.6961 22 6 -0.5380 4.5531 1.4554 23 6 0.7206 3.8724 0.8963 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.0546 3.3942 -0.7865 30 1 3.1602 2.7646 1.0868 31 1 2.7231 1.2842 1.9730 32 1 0.3230 2.0239 1.9290 33 1 2.2764 4.0471 3.1165 34 1 1.7971 2.5090 3.8745 35 1 0.4896 4.4854 4.7327 36 1 -0.5397 3.2405 3.9790 37 1 -0.6271 7.1299 1.1851 38 1 -2.9794 8.0216 1.5108 39 1 -2.9617 7.4302 3.2575 40 1 -0.9636 8.9167 3.7404 41 1 -0.9814 9.5080 1.9935 42 1 -1.3703 3.8493 1.4502 43 1 -0.7871 5.4214 0.8452 44 1 1.5283 4.6006 0.8213 45 1 0.5043 3.4654 -0.0916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725024682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:12 Heat of formation + Delta-G solvation = -14.014460 kcal Electronic energy + Delta-G solvation = -23401.678481 eV Core-core repulsion = 20226.548132 eV Total energy + Delta-G solvation = -3175.130349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36678 -39.25639 -37.46687 -36.89307 -34.13037 -33.71376 -32.01475 -30.54240 -28.47540 -26.29673 -25.33120 -23.99984 -23.37001 -23.25352 -21.94055 -21.06193 -19.75512 -18.57627 -18.46365 -17.03738 -16.80403 -16.40184 -15.83840 -15.58357 -15.54803 -15.16529 -14.90882 -14.71251 -14.44117 -14.03371 -13.91739 -13.59227 -13.39885 -13.14077 -12.97130 -12.89780 -12.56639 -12.44715 -12.33126 -12.18222 -12.06567 -11.92062 -11.64184 -11.60629 -11.49536 -11.43631 -11.16025 -11.00441 -10.76129 -10.39018 -9.63795 -8.45715 -7.74069 -5.35853 1.44672 1.46886 1.49553 1.54283 2.00354 2.54419 2.89629 3.30102 3.47821 3.71337 3.77751 3.93729 3.98142 4.09739 4.16531 4.19265 4.23355 4.43111 4.50355 4.57509 4.66625 4.71432 4.79841 4.83928 4.86274 4.88824 4.93382 4.94009 5.02042 5.12487 5.16201 5.21173 5.24863 5.36114 5.39218 5.44646 5.52482 5.66415 5.72468 5.79993 5.95763 6.40764 6.54178 7.12324 7.26085 7.96580 8.50040 9.20173 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.005801 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.976832 B = 4825.436229 C = 5664.611860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.245 4.245 5 H 0.055 0.945 6 C -0.030 4.030 7 N -0.920 5.920 8 Si 0.937 3.063 9 H -0.268 1.268 10 H -0.303 1.303 11 H -0.278 1.278 12 C 0.156 3.844 13 C -0.088 4.088 14 C -0.120 4.120 15 C 0.117 3.883 16 N -0.603 5.603 17 C 0.535 3.465 18 O -0.592 6.592 19 C -0.214 4.214 20 C -0.130 4.130 21 C -0.150 4.150 22 C 0.112 3.888 23 C -0.107 4.107 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.026 0.974 28 H 0.039 0.961 29 H 0.247 0.753 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.026 0.974 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 4.797 4.723 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 N -0.319 5.319 4 C -0.375 4.375 5 H 0.073 0.927 6 C -0.227 4.227 7 N -0.565 5.565 8 Si 0.765 3.235 9 H -0.193 1.193 10 H -0.230 1.230 11 H -0.204 1.204 12 C 0.030 3.970 13 C -0.109 4.109 14 C -0.159 4.159 15 C -0.005 4.005 16 N -0.334 5.334 17 C 0.325 3.675 18 O -0.474 6.474 19 C -0.234 4.234 20 C -0.167 4.167 21 C -0.188 4.188 22 C -0.010 4.010 23 C -0.146 4.146 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.142 0.858 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.045 0.955 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.255 4.996 5.291 15.121 hybrid contribution 0.922 0.485 -0.725 1.269 sum -12.333 5.481 4.565 14.247 Atomic orbital electron populations 1.22153 0.97211 1.00558 1.00904 1.20960 0.93861 0.85951 0.98262 1.43973 1.76348 1.09306 1.02323 1.18984 1.03461 1.20541 0.94542 0.92726 1.25683 0.94091 1.03284 0.99621 1.70134 1.03710 1.38159 1.44450 0.85817 0.76670 0.80774 0.80205 1.19341 1.22982 1.20355 1.20821 0.95376 0.95481 0.85312 1.21583 0.99499 0.96666 0.93117 1.21856 0.96867 0.99742 0.97412 1.21589 0.96141 0.90766 0.91999 1.48194 1.64090 1.08635 1.12499 1.20226 0.76522 0.82712 0.88002 1.90617 1.54755 1.79689 1.22294 1.22291 1.04823 0.96251 1.00077 1.23026 0.88446 1.00657 1.04596 1.23009 1.01571 0.91301 1.02882 1.22073 0.97742 1.00591 0.80564 1.21791 0.95878 0.96698 1.00191 0.92054 0.93061 0.94241 0.95516 0.94212 0.94422 0.92707 0.96358 0.91318 0.94241 0.89930 0.90540 0.89753 0.84592 0.84946 0.88894 0.89376 0.85783 0.89670 0.88405 0.95491 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 10.21 71.98 0.73 -3.99 16 2 C 0.14 5.33 6.44 86.38 0.56 5.88 16 3 N -0.60 -27.58 2.31 -702.00 -1.62 -29.20 16 4 C -0.24 -12.40 7.35 84.03 0.62 -11.78 16 5 H 0.06 2.77 7.92 -2.91 -0.02 2.75 16 6 C -0.03 -1.57 4.95 84.86 0.42 -1.15 16 7 N -0.92 -52.70 11.50 21.65 0.25 -52.45 16 8 Si 0.94 42.64 29.61 68.60 2.03 44.67 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.16 6.90 4.84 86.38 0.42 7.32 16 13 C -0.09 -3.09 2.36 -10.77 -0.03 -3.12 16 14 C -0.12 -3.81 5.36 30.67 0.16 -3.64 16 15 C 0.12 3.37 6.43 86.36 0.56 3.92 16 16 N -0.60 -17.71 2.97 -818.06 -2.43 -20.14 16 17 C 0.54 16.59 7.48 87.66 0.66 17.25 16 18 O -0.59 -22.26 15.67 -3.04 -0.05 -22.30 16 19 C -0.21 -4.98 5.11 -11.54 -0.06 -5.04 16 20 C -0.13 -2.25 10.24 30.59 0.31 -1.93 16 21 C -0.15 -3.02 10.04 30.59 0.31 -2.71 16 22 C 0.11 3.02 6.37 86.51 0.55 3.57 16 23 C -0.11 -3.80 4.97 30.82 0.15 -3.65 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.55 6.47 -2.39 -0.02 1.54 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 28 H 0.04 1.48 7.83 -2.39 -0.02 1.47 16 29 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.05 2.89 5.54 -2.39 -0.01 2.87 16 31 H 0.02 0.79 7.86 -2.39 -0.02 0.77 16 32 H 0.07 2.26 6.47 -2.39 -0.02 2.25 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.08 2.35 7.01 -2.39 -0.02 2.34 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.14 2.88 6.58 -2.39 -0.02 2.86 16 38 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.09 2.11 7.67 -2.39 -0.02 2.09 16 41 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 2.28 5.52 -2.39 -0.01 2.26 16 44 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.08 3.14 6.26 -2.38 -0.01 3.12 16 Total: -1.00 -63.60 348.45 4.50 -59.10 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.95 Total: 19.40 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.36 Total: 0.93 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.80 Total: -101.79 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -63.60 4.50 -59.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725024682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.086 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds