Wall clock time and date at job start Fri Apr 10 2020 17:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.46964 * 2 1 4 4 C 1.53003 * 109.47223 * 119.99829 * 2 1 3 5 5 N 1.46496 * 109.46856 * 174.99892 * 4 2 1 6 6 C 1.34777 * 119.99649 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00303 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00298 * 180.02562 * 6 5 4 9 9 H 1.09007 * 110.09658 * 23.06849 * 8 6 5 10 10 C 1.54379 * 110.07492 * 144.58192 * 8 6 5 11 11 C 1.54922 * 104.33872 * 142.85542 * 10 8 6 12 12 C 1.54987 * 102.82364 * 322.20932 * 11 10 8 13 13 C 1.53824 * 110.18309 * 261.41467 * 8 6 5 14 14 C 1.52555 * 121.06335 * 24.88681 * 13 8 6 15 15 C 1.52577 * 121.01303 * 96.57405 * 13 8 6 16 16 N 1.46499 * 109.47061 * 239.99893 * 2 1 3 17 17 C 1.46497 * 120.00538 * 299.99993 * 16 2 1 18 18 C 1.36943 * 120.00034 * 119.99971 * 16 2 1 19 19 H 1.08009 * 119.99571 * 21.83393 * 18 16 2 20 20 C 1.38809 * 120.00029 * 201.83078 * 18 16 2 21 21 N 1.31615 * 120.00275 * 11.77830 * 20 18 16 22 22 Si 1.86804 * 119.99841 * 191.77304 * 20 18 16 23 23 H 1.48499 * 109.47015 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47106 * 120.00033 * 22 20 18 25 25 H 1.48504 * 109.47276 * 240.00468 * 22 20 18 26 26 H 1.09005 * 109.47458 * 300.00178 * 1 2 3 27 27 H 1.09004 * 109.47345 * 60.00221 * 1 2 3 28 28 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46568 * 54.99880 * 4 2 1 30 30 H 1.08997 * 109.47436 * 295.00065 * 4 2 1 31 31 H 0.96997 * 120.00610 * 0.02562 * 5 4 2 32 32 H 1.08997 * 110.48060 * 24.10510 * 10 8 6 33 33 H 1.09000 * 110.48290 * 261.60447 * 10 8 6 34 34 H 1.09000 * 110.74583 * 80.54898 * 11 10 8 35 35 H 1.09000 * 110.74287 * 203.87880 * 11 10 8 36 36 H 1.08998 * 110.51504 * 156.21510 * 12 11 10 37 37 H 1.08992 * 110.51524 * 278.93364 * 12 11 10 38 38 H 1.09000 * 117.51057 * 217.84000 * 14 13 8 39 39 H 1.08993 * 117.51127 * 2.93090 * 14 13 8 40 40 H 1.08999 * 117.50964 * 356.98455 * 15 13 8 41 41 H 1.08996 * 117.50758 * 142.07133 * 15 13 8 42 42 H 1.08999 * 109.47253 * 95.16616 * 17 16 2 43 43 H 1.08995 * 109.47454 * 215.17441 * 17 16 2 44 44 H 1.09003 * 109.46669 * 335.17511 * 17 16 2 45 45 H 0.96997 * 120.00284 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1905 6 6 4.1729 -1.4291 2.1906 7 8 3.5699 -1.8841 3.1395 8 6 5.6748 -1.5368 2.1306 9 1 6.0799 -0.7642 1.4769 10 6 6.2730 -1.3992 3.5472 11 6 7.4620 -2.3923 3.5597 12 6 6.9197 -3.5885 2.7367 13 6 6.0872 -2.9291 1.6231 14 6 5.1490 -3.7594 0.7527 15 6 6.4249 -3.1620 0.1536 16 7 2.0182 -0.6906 -1.1961 17 6 1.6644 -2.0932 -1.4281 18 6 2.8055 -0.0251 -2.0976 19 1 3.3540 0.8532 -1.7905 20 6 2.8986 -0.4793 -3.4060 21 7 2.0644 -1.3979 -3.8447 22 14 4.2080 0.2133 -4.5441 23 1 5.0135 1.2250 -3.8142 24 1 5.0943 -0.8853 -5.0054 25 1 3.5575 0.8503 -5.7173 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 3.9824 -0.4622 0.4319 32 1 5.5362 -1.6768 4.3009 33 1 6.6246 -0.3813 3.7155 34 1 8.3354 -1.9551 3.0759 35 1 7.6973 -2.6999 4.5786 36 1 7.7421 -4.1625 2.3097 37 1 6.2902 -4.2255 3.3579 38 1 5.1279 -4.8362 0.9202 39 1 4.1990 -3.3092 0.4649 40 1 6.3141 -2.3188 -0.5282 41 1 7.2430 -3.8457 -0.0728 42 1 0.7895 -2.1448 -2.0761 43 1 2.5004 -2.6048 -1.9048 44 1 1.4398 -2.5734 -0.4756 45 1 2.1292 -1.7150 -4.7590 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725173574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:19 Heat of formation + Delta-G solvation = -4.791875 kcal Electronic energy + Delta-G solvation = -23484.308324 eV Core-core repulsion = 20309.577896 eV Total energy + Delta-G solvation = -3174.730428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16617 -37.92722 -36.58231 -34.11296 -33.61864 -32.00192 -29.61608 -29.03891 -26.12687 -26.03901 -25.05923 -23.04449 -22.28300 -21.11388 -20.18026 -19.44040 -18.36612 -16.94945 -16.61586 -15.77429 -15.52812 -15.23049 -14.79154 -14.46955 -14.06892 -13.74814 -13.38115 -12.79946 -12.77416 -12.68370 -12.41366 -12.24000 -11.96814 -11.56338 -11.43175 -11.26157 -11.07228 -11.05027 -10.85229 -10.80106 -10.75127 -10.57763 -10.41473 -10.27642 -10.06821 -9.90544 -9.84728 -9.79011 -9.13460 -8.61503 -8.45424 -6.82559 -5.76849 -3.23615 3.05076 3.32476 3.39513 3.41591 3.61224 4.05080 4.42950 4.44475 4.67191 4.94800 5.00064 5.18808 5.28001 5.35781 5.37610 5.42262 5.51062 5.61160 5.63224 5.81041 5.84566 5.87997 5.93336 5.94106 6.02362 6.10488 6.14331 6.18019 6.19482 6.25905 6.34213 6.36716 6.42203 6.43865 6.76265 6.84680 6.90549 7.08519 7.38975 7.69551 7.78254 8.11182 8.33784 8.73310 9.18628 9.81781 10.31076 11.27267 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.006044 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.130397 B = 4631.913820 C = 5604.777075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.106 3.894 5 N -0.706 5.706 6 C 0.518 3.482 7 O -0.556 6.556 8 C -0.077 4.077 9 H 0.089 0.911 10 C -0.110 4.110 11 C -0.119 4.119 12 C -0.085 4.085 13 C -0.119 4.119 14 C -0.165 4.165 15 C -0.163 4.163 16 N -0.593 5.593 17 C 0.167 3.833 18 C -0.259 4.259 19 H 0.068 0.932 20 C 0.006 3.994 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.409 0.591 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.028 0.972 43 H 0.042 0.958 44 H -0.003 1.003 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 -1.295 11.036 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.085 0.915 4 C -0.020 4.020 5 N -0.357 5.357 6 C 0.304 3.696 7 O -0.435 6.435 8 C -0.098 4.098 9 H 0.107 0.893 10 C -0.148 4.148 11 C -0.156 4.156 12 C -0.122 4.122 13 C -0.120 4.120 14 C -0.202 4.202 15 C -0.200 4.200 16 N -0.316 5.316 17 C 0.022 3.978 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.245 0.755 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.015 0.985 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.523 -1.688 11.513 13.857 hybrid contribution 0.702 0.474 -1.366 1.608 sum 8.225 -1.215 10.147 13.119 Atomic orbital electron populations 1.22186 0.97564 1.01331 1.00512 1.20613 0.92541 0.95483 0.86485 0.91476 1.21918 0.79938 1.01101 0.99006 1.46005 1.08210 1.58340 1.23096 1.20386 0.89493 0.77446 0.82305 1.90617 1.70209 1.48598 1.34067 1.21444 0.92465 0.97015 0.98903 0.89322 1.22328 0.97715 0.99388 0.95365 1.22435 0.97560 0.95866 0.99785 1.21846 0.97926 0.97095 0.95347 1.21549 1.03088 0.95083 0.92246 1.22989 0.95364 0.99184 1.02652 1.23042 0.99205 1.03606 0.94173 1.43973 1.58178 1.08059 1.21406 1.20717 0.99787 0.83339 0.93912 1.19230 1.19358 1.10518 0.89716 0.91378 1.24995 0.98494 0.99246 0.96581 1.70081 1.36461 1.32392 1.15879 0.86252 0.81343 0.78266 0.81053 1.20361 1.21664 1.21799 0.94020 0.92266 0.93200 0.92286 0.92694 0.75513 0.89773 0.91520 0.91443 0.91434 0.91655 0.91118 0.88992 0.87998 0.88206 0.88864 0.95414 0.93946 0.98501 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.19 37.15 0.34 -2.43 16 2 C 0.16 3.02 2.87 -67.93 -0.19 2.82 16 3 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 4 C 0.11 1.90 4.93 -4.04 -0.02 1.88 16 5 N -0.71 -12.25 5.26 -60.30 -0.32 -12.57 16 6 C 0.52 8.87 5.53 -10.99 -0.06 8.81 16 7 O -0.56 -11.15 15.85 5.55 0.09 -11.06 16 8 C -0.08 -1.08 3.18 -90.62 -0.29 -1.37 16 9 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 10 C -0.11 -1.35 6.32 -24.99 -0.16 -1.51 16 11 C -0.12 -1.23 6.91 -24.67 -0.17 -1.40 16 12 C -0.08 -0.98 6.58 -25.23 -0.17 -1.14 16 13 C -0.12 -1.62 2.27 -154.07 -0.35 -1.97 16 14 C -0.16 -2.49 9.64 -26.91 -0.26 -2.75 16 15 C -0.16 -2.21 10.24 -26.90 -0.28 -2.49 16 16 N -0.59 -13.57 2.29 -173.49 -0.40 -13.97 16 17 C 0.17 3.96 7.99 59.85 0.48 4.44 16 18 C -0.26 -6.51 9.34 -15.06 -0.14 -6.65 16 19 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 20 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 21 N -0.90 -25.33 10.57 55.49 0.59 -24.75 16 22 Si 0.90 20.86 29.57 -169.99 -5.03 15.83 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 29 H 0.06 1.14 6.86 -51.93 -0.36 0.79 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.41 7.21 7.87 -40.82 -0.32 6.89 16 32 H 0.08 1.18 6.97 -51.93 -0.36 0.82 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.82 7.21 -51.93 -0.37 1.45 16 40 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.03 0.72 7.37 -51.93 -0.38 0.34 16 43 H 0.04 1.09 7.23 -51.93 -0.38 0.71 16 44 H 0.00 -0.08 6.54 -51.93 -0.34 -0.42 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -28.76 354.30 -9.01 -37.77 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.93 Total: 7.10 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.35 Total: -3.69 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.13 Total: -51.29 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.76 -9.01 -37.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725173574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.983 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds