Wall clock time and date at job start Fri Apr 10 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.46964 * 2 1 4 4 C 1.53003 * 109.47223 * 119.99829 * 2 1 3 5 5 N 1.46496 * 109.46856 * 174.99892 * 4 2 1 6 6 C 1.34777 * 119.99649 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00303 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00298 * 180.02562 * 6 5 4 9 9 H 1.09007 * 110.09658 * 23.06849 * 8 6 5 10 10 C 1.54379 * 110.07492 * 144.58192 * 8 6 5 11 11 C 1.54922 * 104.33872 * 142.85542 * 10 8 6 12 12 C 1.54987 * 102.82364 * 322.20932 * 11 10 8 13 13 C 1.53824 * 110.18309 * 261.41467 * 8 6 5 14 14 C 1.52555 * 121.06335 * 24.88681 * 13 8 6 15 15 C 1.52577 * 121.01303 * 96.57405 * 13 8 6 16 16 N 1.46499 * 109.47061 * 239.99893 * 2 1 3 17 17 C 1.46497 * 120.00538 * 299.99993 * 16 2 1 18 18 C 1.36943 * 120.00034 * 119.99971 * 16 2 1 19 19 H 1.08009 * 119.99571 * 21.83393 * 18 16 2 20 20 C 1.38809 * 120.00029 * 201.83078 * 18 16 2 21 21 N 1.31615 * 120.00275 * 11.77830 * 20 18 16 22 22 Si 1.86804 * 119.99841 * 191.77304 * 20 18 16 23 23 H 1.48499 * 109.47015 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47106 * 120.00033 * 22 20 18 25 25 H 1.48504 * 109.47276 * 240.00468 * 22 20 18 26 26 H 1.09005 * 109.47458 * 300.00178 * 1 2 3 27 27 H 1.09004 * 109.47345 * 60.00221 * 1 2 3 28 28 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46568 * 54.99880 * 4 2 1 30 30 H 1.08997 * 109.47436 * 295.00065 * 4 2 1 31 31 H 0.96997 * 120.00610 * 0.02562 * 5 4 2 32 32 H 1.08997 * 110.48060 * 24.10510 * 10 8 6 33 33 H 1.09000 * 110.48290 * 261.60447 * 10 8 6 34 34 H 1.09000 * 110.74583 * 80.54898 * 11 10 8 35 35 H 1.09000 * 110.74287 * 203.87880 * 11 10 8 36 36 H 1.08998 * 110.51504 * 156.21510 * 12 11 10 37 37 H 1.08992 * 110.51524 * 278.93364 * 12 11 10 38 38 H 1.09000 * 117.51057 * 217.84000 * 14 13 8 39 39 H 1.08993 * 117.51127 * 2.93090 * 14 13 8 40 40 H 1.08999 * 117.50964 * 356.98455 * 15 13 8 41 41 H 1.08996 * 117.50758 * 142.07133 * 15 13 8 42 42 H 1.08999 * 109.47253 * 95.16616 * 17 16 2 43 43 H 1.08995 * 109.47454 * 215.17441 * 17 16 2 44 44 H 1.09003 * 109.46669 * 335.17511 * 17 16 2 45 45 H 0.96997 * 120.00284 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1905 6 6 4.1729 -1.4291 2.1906 7 8 3.5699 -1.8841 3.1395 8 6 5.6748 -1.5368 2.1306 9 1 6.0799 -0.7642 1.4769 10 6 6.2730 -1.3992 3.5472 11 6 7.4620 -2.3923 3.5597 12 6 6.9197 -3.5885 2.7367 13 6 6.0872 -2.9291 1.6231 14 6 5.1490 -3.7594 0.7527 15 6 6.4249 -3.1620 0.1536 16 7 2.0182 -0.6906 -1.1961 17 6 1.6644 -2.0932 -1.4281 18 6 2.8055 -0.0251 -2.0976 19 1 3.3540 0.8532 -1.7905 20 6 2.8986 -0.4793 -3.4060 21 7 2.0644 -1.3979 -3.8447 22 14 4.2080 0.2133 -4.5441 23 1 5.0135 1.2250 -3.8142 24 1 5.0943 -0.8853 -5.0054 25 1 3.5575 0.8503 -5.7173 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 3.9824 -0.4622 0.4319 32 1 5.5362 -1.6768 4.3009 33 1 6.6246 -0.3813 3.7155 34 1 8.3354 -1.9551 3.0759 35 1 7.6973 -2.6999 4.5786 36 1 7.7421 -4.1625 2.3097 37 1 6.2902 -4.2255 3.3579 38 1 5.1279 -4.8362 0.9202 39 1 4.1990 -3.3092 0.4649 40 1 6.3141 -2.3188 -0.5282 41 1 7.2430 -3.8457 -0.0728 42 1 0.7895 -2.1448 -2.0761 43 1 2.5004 -2.6048 -1.9048 44 1 1.4398 -2.5734 -0.4756 45 1 2.1292 -1.7150 -4.7590 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725173574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:18 Heat of formation + Delta-G solvation = -20.357181 kcal Electronic energy + Delta-G solvation = -23484.983287 eV Core-core repulsion = 20309.577896 eV Total energy + Delta-G solvation = -3175.405390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41047 -39.24212 -38.21350 -35.46563 -34.95155 -33.71601 -31.26788 -30.29272 -28.03218 -27.32148 -26.27422 -24.90424 -23.43036 -22.23285 -21.33135 -21.02919 -19.64404 -18.84119 -17.89334 -17.22588 -16.95211 -16.68075 -16.03871 -15.86950 -15.54560 -15.21921 -14.64393 -14.58403 -14.35287 -13.99529 -13.71546 -13.47969 -13.40170 -13.08051 -12.87565 -12.70313 -12.62257 -12.45142 -12.40284 -12.27424 -12.06876 -11.94867 -11.80432 -11.77201 -11.52385 -11.49315 -11.15034 -11.06015 -10.63018 -10.40099 -9.92458 -8.78369 -7.78092 -5.25722 1.48108 1.50752 1.59125 1.69544 2.31860 2.52820 2.87715 3.37423 3.41608 3.63357 3.66725 3.88471 3.90710 4.04044 4.10911 4.28204 4.34139 4.38128 4.49139 4.58693 4.70048 4.71604 4.73394 4.76559 4.79913 4.91954 4.92864 5.01341 5.02394 5.08015 5.16883 5.19167 5.21685 5.23038 5.28812 5.36930 5.41156 5.48717 5.62675 5.68981 5.75016 6.35203 6.69801 7.18034 7.34173 7.89354 8.35226 9.25581 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.006044 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.130397 B = 4631.913820 C = 5604.777075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.707 5.707 6 C 0.517 3.483 7 O -0.587 6.587 8 C -0.079 4.079 9 H 0.101 0.899 10 C -0.109 4.109 11 C -0.110 4.110 12 C -0.085 4.085 13 C -0.114 4.114 14 C -0.188 4.188 15 C -0.152 4.152 16 N -0.600 5.600 17 C 0.191 3.809 18 C -0.252 4.252 19 H 0.080 0.920 20 C -0.050 4.050 21 N -0.939 5.939 22 Si 0.961 3.039 23 H -0.260 1.260 24 H -0.296 1.296 25 H -0.300 1.300 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.408 0.592 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.116 0.884 42 H -0.001 1.001 43 H 0.015 0.985 44 H 0.012 0.988 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.100 -0.294 12.366 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.093 0.907 4 C -0.009 4.009 5 N -0.356 5.356 6 C 0.305 3.695 7 O -0.469 6.469 8 C -0.100 4.100 9 H 0.119 0.881 10 C -0.147 4.147 11 C -0.148 4.148 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.225 4.225 15 C -0.189 4.189 16 N -0.323 5.323 17 C 0.045 3.955 18 C -0.382 4.382 19 H 0.098 0.902 20 C -0.245 4.245 21 N -0.587 5.587 22 Si 0.791 3.209 23 H -0.184 1.184 24 H -0.224 1.224 25 H -0.228 1.228 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.244 0.756 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.134 0.866 42 H 0.017 0.983 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.649 -0.656 12.875 16.103 hybrid contribution -0.021 0.179 -1.711 1.721 sum 9.628 -0.477 11.164 14.750 Atomic orbital electron populations 1.22074 0.96218 1.01129 1.01379 1.20773 0.93525 0.95512 0.85217 0.90721 1.21734 0.80388 1.00055 0.98747 1.46035 1.07969 1.58426 1.23191 1.20942 0.90841 0.76305 0.81404 1.90599 1.71213 1.49830 1.35234 1.21577 0.90015 0.97785 1.00656 0.88080 1.22342 0.97953 1.01142 0.93251 1.22443 0.97032 0.94518 1.00758 1.21899 0.98035 0.97638 0.94615 1.21695 1.02227 0.94619 0.92903 1.22909 0.94703 0.99757 1.05121 1.23069 0.98616 1.03256 0.93951 1.44089 1.58305 1.07835 1.22117 1.20316 0.97348 0.84121 0.93679 1.19597 1.18773 1.10071 0.89783 0.90228 1.25697 1.00514 1.00105 0.98223 1.70251 1.38406 1.34286 1.15731 0.85284 0.79089 0.77608 0.78954 1.18418 1.22377 1.22792 0.90561 0.93898 0.93976 0.94027 0.91158 0.75603 0.91886 0.89726 0.89701 0.89796 0.89686 0.91980 0.88222 0.91401 0.89339 0.86575 0.98255 0.96637 0.96909 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.19 71.98 0.66 -4.44 16 2 C 0.16 5.86 2.87 44.99 0.13 5.99 16 3 H 0.07 2.70 7.86 -2.39 -0.02 2.68 16 4 C 0.12 4.09 4.93 86.38 0.43 4.51 16 5 N -0.71 -24.14 5.26 -463.06 -2.44 -26.58 16 6 C 0.52 17.46 5.53 87.66 0.48 17.94 16 7 O -0.59 -23.52 15.85 -3.05 -0.05 -23.56 16 8 C -0.08 -2.10 3.18 -10.79 -0.03 -2.13 16 9 H 0.10 2.42 8.11 -2.38 -0.02 2.40 16 10 C -0.11 -2.43 6.32 31.72 0.20 -2.23 16 11 C -0.11 -1.90 6.91 31.93 0.22 -1.68 16 12 C -0.08 -1.73 6.58 31.57 0.21 -1.52 16 13 C -0.11 -2.92 2.27 -51.90 -0.12 -3.03 16 14 C -0.19 -5.68 9.64 30.48 0.29 -5.38 16 15 C -0.15 -3.89 10.24 30.49 0.31 -3.58 16 16 N -0.60 -27.57 2.29 -702.79 -1.61 -29.18 16 17 C 0.19 9.31 7.99 127.77 1.02 10.33 16 18 C -0.25 -12.59 9.34 84.03 0.78 -11.81 16 19 H 0.08 3.75 7.81 -2.91 -0.02 3.73 16 20 C -0.05 -2.68 5.13 84.86 0.44 -2.24 16 21 N -0.94 -54.11 10.57 21.65 0.23 -53.89 16 22 Si 0.96 43.00 29.57 68.60 2.03 45.02 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 26 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.04 1.60 8.14 -2.38 -0.02 1.59 16 28 H 0.04 1.50 7.67 -2.39 -0.02 1.48 16 29 H 0.04 1.61 6.86 -2.39 -0.02 1.59 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.41 14.10 7.87 -92.71 -0.73 13.37 16 32 H 0.06 1.69 6.97 -2.39 -0.02 1.68 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.52 7.21 -2.39 -0.02 2.50 16 40 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.00 -0.05 7.37 -2.39 -0.02 -0.06 16 43 H 0.01 0.81 7.23 -2.39 -0.02 0.79 16 44 H 0.01 0.56 6.54 -2.39 -0.02 0.55 16 45 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -62.74 354.30 3.42 -59.32 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.23 Total: 28.12 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.03 Total: 0.74 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.82 Total: -109.64 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -62.74 3.42 -59.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725173574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.965 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds