Wall clock time and date at job start Fri Apr 10 2020 17:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47518 * 2 1 4 4 C 1.53002 * 109.46846 * 119.99738 * 2 1 3 5 5 N 1.46501 * 109.47295 * 174.99981 * 4 2 1 6 6 C 1.34775 * 120.00476 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99535 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00225 * 180.02562 * 6 5 4 9 9 C 1.52991 * 109.47440 * 59.99981 * 8 6 5 10 10 C 1.53003 * 117.49874 * 248.74920 * 9 8 6 11 11 C 1.52995 * 117.50273 * 180.08800 * 9 8 6 12 12 C 1.53002 * 109.47044 * 180.02562 * 8 6 5 13 13 C 1.53003 * 117.49972 * 128.74561 * 12 8 6 14 14 C 1.53002 * 117.49734 * 60.08670 * 12 8 6 15 15 N 1.46497 * 109.47085 * 239.99545 * 2 1 3 16 16 C 1.46496 * 120.00058 * 300.00134 * 15 2 1 17 17 C 1.36939 * 119.99985 * 120.00511 * 15 2 1 18 18 H 1.07995 * 119.99733 * 339.59495 * 17 15 2 19 19 C 1.38807 * 119.99782 * 159.32227 * 17 15 2 20 20 N 1.31617 * 120.00198 * 345.41104 * 19 17 15 21 21 Si 1.86804 * 119.99906 * 165.41577 * 19 17 15 22 22 H 1.48496 * 109.47101 * 94.69588 * 21 19 17 23 23 H 1.48502 * 109.47051 * 214.70207 * 21 19 17 24 24 H 1.48504 * 109.46954 * 334.69634 * 21 19 17 25 25 H 1.08998 * 109.46813 * 300.00677 * 1 2 3 26 26 H 1.08999 * 109.46762 * 60.00264 * 1 2 3 27 27 H 1.08993 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47434 * 294.99856 * 4 2 1 29 29 H 1.08997 * 109.47404 * 54.99877 * 4 2 1 30 30 H 0.97006 * 120.00058 * 359.97438 * 5 4 2 31 31 H 1.09003 * 109.47180 * 299.99873 * 8 6 5 32 32 H 1.09006 * 115.54789 * 34.41299 * 9 8 6 33 33 H 1.08995 * 117.50086 * 359.97438 * 10 9 8 34 34 H 1.09004 * 117.49615 * 145.01707 * 10 9 8 35 35 H 1.09002 * 117.50287 * 214.97919 * 11 9 8 36 36 H 1.09000 * 117.49792 * 359.97438 * 11 9 8 37 37 H 1.09000 * 115.55126 * 274.41126 * 12 8 6 38 38 H 1.09004 * 117.49887 * 359.97438 * 13 12 8 39 39 H 1.08994 * 117.50007 * 145.01751 * 13 12 8 40 40 H 1.09000 * 117.49376 * 214.97809 * 14 12 8 41 41 H 1.08991 * 117.50312 * 359.97438 * 14 12 8 42 42 H 1.09006 * 109.47443 * 264.89222 * 16 15 2 43 43 H 1.09000 * 109.47175 * 24.88980 * 16 15 2 44 44 H 1.08997 * 109.47213 * 144.89009 * 16 15 2 45 45 H 0.97008 * 119.99939 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4282 2.1914 7 8 3.5699 -1.8823 3.1405 8 6 5.6750 -1.5359 2.1313 9 6 6.2846 -0.1342 2.0666 10 6 6.9638 0.2812 0.7600 11 6 7.8094 -0.0294 1.9976 12 6 6.1849 -2.2572 3.3806 13 6 7.1316 -3.4416 3.1755 14 6 5.6884 -3.6837 3.6248 15 7 2.0183 -0.6907 -1.1961 16 6 1.6644 -2.0932 -1.4278 17 6 2.8057 -0.0253 -2.0975 18 1 2.8035 1.0544 -2.1227 19 6 3.6108 -0.7384 -2.9750 20 7 3.8435 -2.0165 -2.7638 21 14 4.3642 0.1159 -4.4555 22 1 5.7358 0.5740 -4.1178 23 1 4.4259 -0.8330 -5.5962 24 1 3.5296 1.2859 -4.8296 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.7516 -0.1582 2.1370 29 1 1.6053 -1.7197 1.2953 30 1 3.9824 -0.4629 0.4317 31 1 5.9637 -2.0990 1.2438 32 1 5.7519 0.6363 2.6240 33 1 6.9767 -0.4443 -0.0533 34 1 6.8782 1.3250 0.4581 35 1 8.2799 0.8102 2.5093 36 1 8.3783 -0.9592 1.9987 37 1 6.3507 -1.6257 4.2533 38 1 7.3908 -3.7072 2.1506 39 1 7.9199 -3.5894 3.9136 40 1 5.5279 -3.9907 4.6583 41 1 4.9982 -4.1081 2.8958 42 1 2.4603 -2.7359 -1.0514 43 1 0.7346 -2.3240 -0.9079 44 1 1.5349 -2.2635 -2.4966 45 1 4.4059 -2.5150 -3.3772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725189173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:28 Heat of formation + Delta-G solvation = 13.726248 kcal Electronic energy + Delta-G solvation = -23344.025287 eV Core-core repulsion = 20170.097866 eV Total energy + Delta-G solvation = -3173.927422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12261 -38.92565 -38.07310 -37.06167 -35.24030 -33.70027 -31.24955 -30.31929 -27.99773 -26.83315 -24.89467 -23.46740 -23.10147 -22.30313 -22.08712 -21.04149 -20.41015 -18.82834 -18.08319 -17.20621 -16.92802 -16.69372 -16.19918 -15.80021 -15.51767 -15.11892 -14.76793 -14.66326 -14.40827 -14.15955 -13.79790 -13.56594 -13.21052 -12.84494 -12.66536 -12.58866 -12.51414 -12.42938 -12.36308 -12.30931 -12.24806 -12.08934 -11.71679 -11.51684 -11.47706 -11.26350 -11.17925 -10.71556 -10.58623 -10.41942 -9.82118 -8.76913 -7.75292 -5.21298 1.48604 1.52949 1.59585 1.76417 2.37013 2.54822 2.86687 3.06373 3.38477 3.62866 3.66359 3.78087 3.90076 4.08212 4.08803 4.14418 4.18785 4.35504 4.39199 4.45267 4.51039 4.62490 4.71310 4.80008 4.80973 4.84446 4.86103 4.90004 5.04199 5.08672 5.08933 5.21745 5.27662 5.27956 5.30945 5.32142 5.36197 5.49732 5.66930 5.74142 5.76185 6.36622 6.77966 7.20347 7.40640 7.92250 8.37552 9.26429 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.006429 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.064772 B = 4354.513133 C = 5359.677697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.072 0.928 4 C 0.114 3.886 5 N -0.702 5.702 6 C 0.512 3.488 7 O -0.582 6.582 8 C -0.038 4.038 9 C -0.150 4.150 10 C -0.183 4.183 11 C -0.146 4.146 12 C -0.129 4.129 13 C -0.161 4.161 14 C -0.173 4.173 15 N -0.600 5.600 16 C 0.183 3.817 17 C -0.256 4.256 18 H 0.073 0.927 19 C -0.041 4.041 20 N -0.928 5.928 21 Si 0.955 3.045 22 H -0.285 1.285 23 H -0.303 1.303 24 H -0.275 1.275 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.409 0.591 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.064 0.936 42 H -0.001 1.001 43 H 0.022 0.978 44 H 0.014 0.986 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 3.439 10.059 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.091 0.909 4 C -0.012 4.012 5 N -0.352 5.352 6 C 0.299 3.701 7 O -0.463 6.463 8 C -0.060 4.060 9 C -0.169 4.169 10 C -0.220 4.220 11 C -0.182 4.182 12 C -0.148 4.148 13 C -0.198 4.198 14 C -0.210 4.210 15 N -0.323 5.323 16 C 0.038 3.962 17 C -0.386 4.386 18 H 0.091 0.909 19 C -0.237 4.237 20 N -0.575 5.575 21 Si 0.785 3.215 22 H -0.212 1.212 23 H -0.230 1.230 24 H -0.200 1.200 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.245 0.755 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.017 0.983 43 H 0.040 0.960 44 H 0.032 0.968 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.940 3.027 10.599 12.079 hybrid contribution 0.327 0.051 -1.613 1.647 sum 5.267 3.078 8.986 10.861 Atomic orbital electron populations 1.22060 0.95158 1.01577 1.02005 1.20828 0.94213 0.95510 0.84509 0.90935 1.21828 0.80422 0.99843 0.99135 1.45944 1.07986 1.58167 1.23087 1.20906 0.90596 0.76857 0.81762 1.90599 1.71133 1.49640 1.34938 1.20398 0.89982 0.96778 0.98802 1.21928 0.96769 0.95246 1.02934 1.23063 1.04905 1.02597 0.91472 1.23010 0.91231 1.04027 0.99979 1.21824 1.04415 0.90627 0.97922 1.23159 0.93073 1.00597 1.02935 1.22731 0.97072 0.99171 1.02042 1.44062 1.57543 1.09253 1.21486 1.20393 0.94029 0.84813 0.96965 1.19474 1.16777 0.91079 1.11273 0.90931 1.25512 0.99118 0.96602 1.02428 1.70257 1.40964 1.08760 1.37501 0.85451 0.78499 0.77529 0.80067 1.21160 1.22983 1.19974 0.90535 0.92719 0.93425 0.91512 0.94438 0.75470 0.90046 0.87742 0.90165 0.88014 0.86792 0.87974 0.86894 0.89178 0.86292 0.88155 0.91733 0.98283 0.96003 0.96760 0.94663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 9.18 71.98 0.66 -3.97 16 2 C 0.16 5.82 2.87 44.99 0.13 5.94 16 3 H 0.07 2.63 7.85 -2.39 -0.02 2.61 16 4 C 0.11 4.24 4.97 86.38 0.43 4.67 16 5 N -0.70 -27.20 5.29 -463.06 -2.45 -29.65 16 6 C 0.51 19.40 7.01 87.66 0.61 20.01 16 7 O -0.58 -24.74 15.09 -3.03 -0.05 -24.78 16 8 C -0.04 -1.19 2.50 -11.54 -0.03 -1.22 16 9 C -0.15 -3.96 4.93 -10.80 -0.05 -4.01 16 10 C -0.18 -4.82 10.18 30.62 0.31 -4.50 16 11 C -0.15 -3.05 9.88 30.62 0.30 -2.75 16 12 C -0.13 -3.52 4.38 -10.79 -0.05 -3.57 16 13 C -0.16 -3.67 10.18 30.62 0.31 -3.36 16 14 C -0.17 -4.93 8.98 30.62 0.27 -4.66 16 15 N -0.60 -27.45 2.29 -702.80 -1.61 -29.06 16 16 C 0.18 8.84 8.10 127.77 1.04 9.88 16 17 C -0.26 -12.77 9.34 84.03 0.78 -11.99 16 18 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 19 C -0.04 -2.12 5.07 84.86 0.43 -1.69 16 20 N -0.93 -51.54 10.66 21.65 0.23 -51.31 16 21 Si 0.95 42.71 29.58 68.60 2.03 44.74 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.52 6.66 -2.39 -0.02 1.50 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 30 H 0.41 16.86 7.79 -92.70 -0.72 16.14 16 31 H 0.08 2.77 7.66 -2.39 -0.02 2.75 16 32 H 0.10 2.75 8.11 -2.38 -0.02 2.73 16 33 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 34 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.11 2.87 8.11 -2.39 -0.02 2.85 16 38 H 0.09 2.11 8.05 -2.38 -0.02 2.09 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 42 H 0.00 -0.06 7.39 -2.38 -0.02 -0.08 16 43 H 0.02 0.93 6.44 -2.39 -0.02 0.91 16 44 H 0.01 0.73 7.22 -2.39 -0.02 0.71 16 45 H 0.24 13.45 8.31 -92.70 -0.77 12.68 16 Total: -1.00 -59.70 362.35 3.54 -56.16 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.23 Total: 35.12 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.16 Total: -1.22 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -3.83 Total: -110.02 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -59.70 3.54 -56.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725189173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.885 kcal (2) G-P(sol) polarization free energy of solvation -59.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds