Wall clock time and date at job start Fri Apr 10 2020 17:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47174 * 2 1 4 4 C 1.53003 * 109.47010 * 119.99796 * 2 1 3 5 5 N 1.46495 * 109.47384 * 174.99894 * 4 2 1 6 6 C 1.34771 * 120.00321 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00376 * 179.97438 * 6 5 4 9 9 C 1.51856 * 108.64696 * 55.90851 * 8 6 5 10 10 C 1.53069 * 110.74442 * 187.60916 * 9 8 6 11 11 C 1.51374 * 108.61519 * 274.26132 * 10 9 8 12 12 C 1.29526 * 120.35941 * 71.88232 * 11 10 9 13 13 C 1.51378 * 120.36176 * 0.02562 * 12 11 10 14 14 C 1.51846 * 108.65444 * 179.97438 * 8 6 5 15 15 N 1.46496 * 109.47255 * 239.99583 * 2 1 3 16 16 C 1.46500 * 120.00002 * 300.00683 * 15 2 1 17 17 C 1.36936 * 119.99947 * 119.99972 * 15 2 1 18 18 H 1.07995 * 120.00419 * 327.91948 * 17 15 2 19 19 C 1.38815 * 119.99925 * 147.92228 * 17 15 2 20 20 N 1.31612 * 120.00236 * 152.72006 * 19 17 15 21 21 Si 1.86800 * 119.99858 * 332.71660 * 19 17 15 22 22 H 1.48507 * 109.47067 * 95.38742 * 21 19 17 23 23 H 1.48502 * 109.47389 * 215.38748 * 21 19 17 24 24 H 1.48499 * 109.47639 * 335.39382 * 21 19 17 25 25 H 1.08997 * 109.47623 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47410 * 300.00697 * 1 2 3 27 27 H 1.08997 * 109.46848 * 60.00095 * 1 2 3 28 28 H 1.09002 * 109.47070 * 54.99721 * 4 2 1 29 29 H 1.09005 * 109.46870 * 295.00281 * 4 2 1 30 30 H 0.97006 * 119.99896 * 0.02562 * 5 4 2 31 31 H 1.09000 * 108.60461 * 298.02237 * 8 6 5 32 32 H 1.09001 * 109.21991 * 307.92532 * 9 8 6 33 33 H 1.08997 * 109.22321 * 67.27867 * 9 8 6 34 34 H 1.09002 * 109.62816 * 154.51807 * 10 9 8 35 35 H 1.09001 * 109.60122 * 33.98992 * 10 9 8 36 36 H 1.08003 * 119.82069 * 252.16576 * 11 10 9 37 37 H 1.08001 * 119.81925 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.60597 * 47.81621 * 13 12 11 39 39 H 1.08991 * 109.60983 * 168.16514 * 13 12 11 40 40 H 1.09002 * 109.21891 * 52.07147 * 14 8 6 41 41 H 1.08999 * 109.18810 * 292.70527 * 14 8 6 42 42 H 1.08993 * 109.47782 * 95.17424 * 16 15 2 43 43 H 1.09006 * 109.46797 * 215.17664 * 16 15 2 44 44 H 1.09005 * 109.46738 * 335.16947 * 16 15 2 45 45 H 0.97002 * 120.00542 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4283 2.1913 7 8 3.5699 -1.8824 3.1405 8 6 5.6748 -1.5370 2.1308 9 6 6.2562 -0.1441 1.9639 10 6 7.7638 -0.2128 1.7084 11 6 8.4776 -0.2731 3.0419 12 6 8.4286 -1.3481 3.7627 13 6 7.6572 -2.5581 3.2806 14 6 6.1606 -2.2534 3.3783 15 7 2.0184 -0.6907 -1.1961 16 6 1.6643 -2.0932 -1.4279 17 6 2.8056 -0.0252 -2.0975 18 1 2.6686 1.0343 -2.2554 19 6 3.7799 -0.7125 -2.8083 20 7 4.1571 -0.2815 -3.9933 21 14 4.5557 -2.2492 -2.0830 22 1 3.8489 -3.4502 -2.5963 23 1 5.9871 -2.3127 -2.4735 24 1 4.4479 -2.2067 -0.6025 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -1.7198 1.2953 29 1 1.7515 -0.1582 2.1370 30 1 3.9824 -0.4622 0.4320 31 1 5.9455 -2.1323 1.2587 32 1 5.7715 0.3484 1.1209 33 1 6.0716 0.4328 2.8701 34 1 8.0834 0.6746 1.1621 35 1 7.9960 -1.1060 1.1284 36 1 9.0271 0.5866 3.3963 37 1 8.9408 -1.3814 4.7130 38 1 7.9207 -2.7707 2.2445 39 1 7.8997 -3.4187 3.9039 40 1 5.6112 -3.1879 3.4923 41 1 5.9786 -1.6219 4.2479 42 1 0.7896 -2.1449 -2.0761 43 1 2.5005 -2.6050 -1.9045 44 1 1.4397 -2.5734 -0.4754 45 1 4.8382 -0.7616 -4.4899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725194451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:41 Heat of formation + Delta-G solvation = -8.867787 kcal Electronic energy + Delta-G solvation = -23492.284762 eV Core-core repulsion = 20317.377589 eV Total energy + Delta-G solvation = -3174.907173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.98599 -37.92512 -36.83460 -33.80609 -32.76821 -32.05928 -31.66930 -30.16179 -26.63603 -26.24071 -24.99531 -23.86529 -23.21286 -21.21489 -19.74912 -19.21770 -18.03225 -17.04817 -16.92042 -16.19626 -15.68298 -15.48974 -15.02330 -14.54354 -14.05690 -13.80058 -13.37263 -13.17070 -12.95971 -12.87925 -12.58350 -12.37807 -12.23559 -12.22514 -12.03138 -11.82850 -11.69625 -11.26955 -11.19010 -10.85024 -10.73825 -10.57730 -10.47047 -10.31227 -10.15887 -10.04055 -9.60169 -9.41497 -8.99023 -8.56863 -8.43347 -7.01269 -6.10796 -3.44078 2.26600 3.06206 3.24720 3.37768 3.42441 3.71863 4.43106 4.61598 4.82576 4.86691 4.94779 5.06113 5.10862 5.18867 5.21028 5.42913 5.45411 5.53050 5.57275 5.72105 5.76999 5.79875 5.85284 5.95888 5.98327 6.03342 6.10488 6.17735 6.19971 6.24514 6.25533 6.32508 6.40489 6.51219 6.63905 6.66800 6.71595 6.77685 6.88337 7.02691 7.90701 8.08864 8.25499 8.70411 8.87197 9.61914 10.01841 11.04580 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.006373 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.718950 B = 4392.349316 C = 5263.849693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.077 0.923 4 C 0.102 3.898 5 N -0.706 5.706 6 C 0.511 3.489 7 O -0.561 6.561 8 C -0.107 4.107 9 C -0.106 4.106 10 C -0.092 4.092 11 C -0.156 4.156 12 C -0.159 4.159 13 C -0.093 4.093 14 C -0.091 4.091 15 N -0.603 5.603 16 C 0.113 3.887 17 C -0.276 4.276 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.891 5.891 21 Si 0.868 3.132 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.258 1.258 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.413 0.587 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.017 0.983 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -0.975 12.486 13.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.095 0.905 4 C -0.024 4.024 5 N -0.358 5.358 6 C 0.297 3.703 7 O -0.441 6.441 8 C -0.128 4.128 9 C -0.144 4.144 10 C -0.130 4.130 11 C -0.174 4.174 12 C -0.177 4.177 13 C -0.131 4.131 14 C -0.129 4.129 15 N -0.327 5.327 16 C -0.031 4.031 17 C -0.403 4.403 18 H 0.098 0.902 19 C -0.165 4.165 20 N -0.531 5.531 21 Si 0.699 3.301 22 H -0.219 1.219 23 H -0.233 1.233 24 H -0.183 1.183 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.251 0.749 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.486 -1.286 12.966 13.780 hybrid contribution 0.742 -0.827 -0.184 1.126 sum 5.228 -2.112 12.782 13.970 Atomic orbital electron populations 1.22138 0.96979 1.01384 1.01045 1.20772 0.92838 0.96370 0.85086 0.90456 1.21955 0.80297 1.00969 0.99192 1.46101 1.08066 1.58321 1.23308 1.20613 0.89837 0.77608 0.82250 1.90622 1.70535 1.48967 1.33968 1.21048 0.92199 0.98659 1.00921 1.21292 0.95204 0.95084 1.02809 1.20837 0.94105 1.02834 0.95190 1.22568 0.99921 0.98059 0.96870 1.22546 0.99882 0.95715 0.99518 1.20857 0.94466 0.96210 1.01537 1.21053 0.94126 1.00943 0.96747 1.44117 1.58317 1.08869 1.21366 1.21268 0.98218 0.85934 0.97705 1.18797 1.11129 0.95275 1.15144 0.90204 1.25340 0.97535 0.97613 0.95988 1.69938 1.31756 1.41518 1.09931 0.87182 0.77717 0.83978 0.81228 1.21872 1.23299 1.18284 0.93200 0.93322 0.92103 0.92469 0.92407 0.74927 0.89048 0.90712 0.91270 0.90888 0.90834 0.87628 0.87722 0.91023 0.91379 0.90950 0.91302 0.96479 0.94434 0.94824 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.19 37.16 0.34 -2.09 16 2 C 0.16 2.83 2.87 -67.93 -0.19 2.64 16 3 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 4 C 0.10 1.79 4.93 -4.04 -0.02 1.77 16 5 N -0.71 -12.86 4.34 -60.29 -0.26 -13.12 16 6 C 0.51 9.21 7.14 -10.99 -0.08 9.14 16 7 O -0.56 -11.50 15.76 5.56 0.09 -11.41 16 8 C -0.11 -1.61 2.06 -92.94 -0.19 -1.80 16 9 C -0.11 -1.42 4.87 -27.28 -0.13 -1.56 16 10 C -0.09 -1.10 5.62 -27.52 -0.15 -1.25 16 11 C -0.16 -1.69 9.34 -35.28 -0.33 -2.02 16 12 C -0.16 -1.69 9.34 -35.28 -0.33 -2.02 16 13 C -0.09 -1.05 5.62 -27.53 -0.15 -1.21 16 14 C -0.09 -1.23 4.30 -27.30 -0.12 -1.35 16 15 N -0.60 -13.08 1.93 -173.49 -0.33 -13.42 16 16 C 0.11 2.40 8.77 59.85 0.52 2.93 16 17 C -0.28 -7.04 9.57 -15.06 -0.14 -7.19 16 18 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 19 C 0.04 0.97 5.27 -17.43 -0.09 0.88 16 20 N -0.89 -25.80 13.97 55.49 0.78 -25.02 16 21 Si 0.87 20.42 24.74 -169.99 -4.21 16.22 16 22 H -0.29 -7.05 6.62 56.52 0.37 -6.68 16 23 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.26 -5.57 5.40 56.52 0.31 -5.26 16 25 H 0.05 0.77 7.67 -51.93 -0.40 0.37 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.05 6.86 -51.93 -0.36 0.70 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.41 7.84 5.72 -40.82 -0.23 7.60 16 31 H 0.09 1.42 7.85 -51.93 -0.41 1.01 16 32 H 0.07 1.06 6.99 -51.93 -0.36 0.69 16 33 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.90 6.68 -51.93 -0.35 0.55 16 36 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.07 0.82 6.68 -51.93 -0.35 0.47 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.05 7.77 -51.93 -0.40 0.64 16 41 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.87 2.75 -51.93 -0.14 0.72 16 44 H 0.03 0.64 6.53 -51.93 -0.34 0.30 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -29.31 339.19 -7.53 -36.83 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.63 Total: 7.94 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.07 Total: -3.14 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.18 Total: -51.56 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.21 Total: 16.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.31 -7.53 -36.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725194451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.967 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds