Wall clock time and date at job start Fri Apr 10 2020 17:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47174 * 2 1 4 4 C 1.53003 * 109.47010 * 119.99796 * 2 1 3 5 5 N 1.46495 * 109.47384 * 174.99894 * 4 2 1 6 6 C 1.34771 * 120.00321 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00376 * 179.97438 * 6 5 4 9 9 C 1.51856 * 108.64696 * 55.90851 * 8 6 5 10 10 C 1.53069 * 110.74442 * 187.60916 * 9 8 6 11 11 C 1.51374 * 108.61519 * 274.26132 * 10 9 8 12 12 C 1.29526 * 120.35941 * 71.88232 * 11 10 9 13 13 C 1.51378 * 120.36176 * 0.02562 * 12 11 10 14 14 C 1.51846 * 108.65444 * 179.97438 * 8 6 5 15 15 N 1.46496 * 109.47255 * 239.99583 * 2 1 3 16 16 C 1.46500 * 120.00002 * 300.00683 * 15 2 1 17 17 C 1.36936 * 119.99947 * 119.99972 * 15 2 1 18 18 H 1.07995 * 120.00419 * 327.91948 * 17 15 2 19 19 C 1.38815 * 119.99925 * 147.92228 * 17 15 2 20 20 N 1.31612 * 120.00236 * 152.72006 * 19 17 15 21 21 Si 1.86800 * 119.99858 * 332.71660 * 19 17 15 22 22 H 1.48507 * 109.47067 * 95.38742 * 21 19 17 23 23 H 1.48502 * 109.47389 * 215.38748 * 21 19 17 24 24 H 1.48499 * 109.47639 * 335.39382 * 21 19 17 25 25 H 1.08997 * 109.47623 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47410 * 300.00697 * 1 2 3 27 27 H 1.08997 * 109.46848 * 60.00095 * 1 2 3 28 28 H 1.09002 * 109.47070 * 54.99721 * 4 2 1 29 29 H 1.09005 * 109.46870 * 295.00281 * 4 2 1 30 30 H 0.97006 * 119.99896 * 0.02562 * 5 4 2 31 31 H 1.09000 * 108.60461 * 298.02237 * 8 6 5 32 32 H 1.09001 * 109.21991 * 307.92532 * 9 8 6 33 33 H 1.08997 * 109.22321 * 67.27867 * 9 8 6 34 34 H 1.09002 * 109.62816 * 154.51807 * 10 9 8 35 35 H 1.09001 * 109.60122 * 33.98992 * 10 9 8 36 36 H 1.08003 * 119.82069 * 252.16576 * 11 10 9 37 37 H 1.08001 * 119.81925 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.60597 * 47.81621 * 13 12 11 39 39 H 1.08991 * 109.60983 * 168.16514 * 13 12 11 40 40 H 1.09002 * 109.21891 * 52.07147 * 14 8 6 41 41 H 1.08999 * 109.18810 * 292.70527 * 14 8 6 42 42 H 1.08993 * 109.47782 * 95.17424 * 16 15 2 43 43 H 1.09006 * 109.46797 * 215.17664 * 16 15 2 44 44 H 1.09005 * 109.46738 * 335.16947 * 16 15 2 45 45 H 0.97002 * 120.00542 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4283 2.1913 7 8 3.5699 -1.8824 3.1405 8 6 5.6748 -1.5370 2.1308 9 6 6.2562 -0.1441 1.9639 10 6 7.7638 -0.2128 1.7084 11 6 8.4776 -0.2731 3.0419 12 6 8.4286 -1.3481 3.7627 13 6 7.6572 -2.5581 3.2806 14 6 6.1606 -2.2534 3.3783 15 7 2.0184 -0.6907 -1.1961 16 6 1.6643 -2.0932 -1.4279 17 6 2.8056 -0.0252 -2.0975 18 1 2.6686 1.0343 -2.2554 19 6 3.7799 -0.7125 -2.8083 20 7 4.1571 -0.2815 -3.9933 21 14 4.5557 -2.2492 -2.0830 22 1 3.8489 -3.4502 -2.5963 23 1 5.9871 -2.3127 -2.4735 24 1 4.4479 -2.2067 -0.6025 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -1.7198 1.2953 29 1 1.7515 -0.1582 2.1370 30 1 3.9824 -0.4622 0.4320 31 1 5.9455 -2.1323 1.2587 32 1 5.7715 0.3484 1.1209 33 1 6.0716 0.4328 2.8701 34 1 8.0834 0.6746 1.1621 35 1 7.9960 -1.1060 1.1284 36 1 9.0271 0.5866 3.3963 37 1 8.9408 -1.3814 4.7130 38 1 7.9207 -2.7707 2.2445 39 1 7.8997 -3.4187 3.9039 40 1 5.6112 -3.1879 3.4923 41 1 5.9786 -1.6219 4.2479 42 1 0.7896 -2.1449 -2.0761 43 1 2.5005 -2.6050 -1.9045 44 1 1.4397 -2.5734 -0.4754 45 1 4.8382 -0.7616 -4.4899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725194451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:39 Heat of formation + Delta-G solvation = -25.547399 kcal Electronic energy + Delta-G solvation = -23493.008044 eV Core-core repulsion = 20317.377589 eV Total energy + Delta-G solvation = -3175.630455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.30326 -39.14918 -38.34347 -35.42216 -34.17013 -33.48614 -32.72830 -31.79743 -28.07167 -27.83322 -26.16075 -25.08492 -24.79762 -22.40390 -21.24338 -20.60618 -18.94550 -18.88602 -18.23927 -17.49906 -17.33395 -16.87714 -16.44352 -15.89144 -15.36638 -15.18292 -14.73840 -14.49155 -14.39100 -14.22116 -14.13276 -13.90949 -13.77293 -13.65326 -13.24086 -13.14755 -12.77355 -12.62469 -12.47865 -12.28573 -12.17007 -12.03700 -11.78812 -11.69268 -11.57963 -11.40034 -11.24510 -10.77255 -10.58634 -9.96267 -9.86366 -8.87613 -8.18913 -5.48320 1.33505 1.42546 1.44153 1.54158 1.65315 2.33904 2.44766 3.01724 3.35495 3.60704 3.69035 3.81086 4.00440 4.09414 4.20349 4.23785 4.31964 4.43298 4.48462 4.50364 4.54835 4.57495 4.65105 4.72611 4.77922 4.83622 4.85941 4.90078 5.00480 5.02990 5.04598 5.15603 5.18302 5.25186 5.26611 5.36916 5.41014 5.59391 5.80659 5.92181 6.06609 6.19211 6.62057 6.95155 7.25862 7.64950 8.06335 9.00439 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.006373 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.718950 B = 4392.349316 C = 5263.849693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.073 0.927 4 C 0.108 3.892 5 N -0.711 5.711 6 C 0.508 3.492 7 O -0.586 6.586 8 C -0.104 4.104 9 C -0.102 4.102 10 C -0.093 4.093 11 C -0.161 4.161 12 C -0.160 4.160 13 C -0.091 4.091 14 C -0.085 4.085 15 N -0.609 5.609 16 C 0.114 3.886 17 C -0.255 4.255 18 H 0.050 0.950 19 C -0.014 4.014 20 N -0.941 5.941 21 Si 0.931 3.069 22 H -0.299 1.299 23 H -0.314 1.314 24 H -0.234 1.234 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.409 0.591 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.057 0.943 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -1.495 14.582 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 H 0.091 0.909 4 C -0.018 4.018 5 N -0.362 5.362 6 C 0.295 3.705 7 O -0.468 6.468 8 C -0.125 4.125 9 C -0.140 4.140 10 C -0.130 4.130 11 C -0.179 4.179 12 C -0.178 4.178 13 C -0.129 4.129 14 C -0.123 4.123 15 N -0.333 5.333 16 C -0.031 4.031 17 C -0.384 4.384 18 H 0.068 0.932 19 C -0.211 4.211 20 N -0.585 5.585 21 Si 0.762 3.238 22 H -0.228 1.228 23 H -0.243 1.243 24 H -0.158 1.158 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.760 -1.805 15.108 15.942 hybrid contribution 0.531 -0.595 -0.824 1.147 sum 5.290 -2.400 14.283 15.420 Atomic orbital electron populations 1.22038 0.94606 1.02011 1.02039 1.20905 0.94471 0.95748 0.83835 0.90884 1.21907 0.79986 1.00741 0.99168 1.46214 1.08430 1.58313 1.23211 1.21129 0.91013 0.76772 0.81588 1.90606 1.71332 1.50002 1.34813 1.21116 0.90160 0.99697 1.01527 1.21258 0.96310 0.93937 1.02481 1.20833 0.92958 1.03077 0.96152 1.22662 1.00089 0.98853 0.96251 1.22695 0.99671 0.95199 1.00192 1.20844 0.92750 0.97310 1.01947 1.20999 0.95670 0.99960 0.95661 1.44169 1.57850 1.09162 1.22157 1.21268 0.97509 0.85415 0.98875 1.18668 1.10738 0.94140 1.14890 0.93245 1.25840 0.98400 1.00795 0.96089 1.70052 1.33121 1.43767 1.11536 0.86186 0.75858 0.80109 0.81644 1.22803 1.24324 1.15773 0.92737 0.90355 0.93128 0.92860 0.90847 0.75416 0.89418 0.91751 0.91005 0.90106 0.91230 0.86033 0.85924 0.91191 0.89760 0.92109 0.91846 0.96209 0.96212 0.92445 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.19 71.98 0.66 -3.57 16 2 C 0.16 5.39 2.87 44.99 0.13 5.51 16 3 H 0.07 2.58 7.89 -2.39 -0.02 2.56 16 4 C 0.11 3.53 4.93 86.38 0.43 3.96 16 5 N -0.71 -24.77 4.34 -463.06 -2.01 -26.78 16 6 C 0.51 17.57 7.14 87.66 0.63 18.20 16 7 O -0.59 -23.16 15.76 -3.04 -0.05 -23.20 16 8 C -0.10 -2.97 2.06 -12.30 -0.03 -3.00 16 9 C -0.10 -2.60 4.87 30.24 0.15 -2.45 16 10 C -0.09 -2.04 5.62 30.09 0.17 -1.87 16 11 C -0.16 -3.07 9.34 27.37 0.26 -2.82 16 12 C -0.16 -2.97 9.34 27.37 0.26 -2.71 16 13 C -0.09 -1.85 5.62 30.08 0.17 -1.68 16 14 C -0.08 -2.17 4.30 30.23 0.13 -2.04 16 15 N -0.61 -25.81 1.93 -702.78 -1.35 -27.16 16 16 C 0.11 4.63 8.77 127.77 1.12 5.75 16 17 C -0.26 -13.12 9.57 84.03 0.80 -12.32 16 18 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 19 C -0.01 -0.76 5.27 84.86 0.45 -0.32 16 20 N -0.94 -55.84 13.97 21.65 0.30 -55.54 16 21 Si 0.93 42.83 24.74 68.60 1.70 44.53 16 22 H -0.30 -14.13 6.62 99.48 0.66 -13.47 16 23 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 24 H -0.23 -9.62 5.40 99.48 0.54 -9.09 16 25 H 0.05 1.52 7.67 -2.39 -0.02 1.50 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.82 6.86 -2.39 -0.02 1.80 16 29 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.41 15.03 5.72 -92.70 -0.53 14.50 16 31 H 0.09 2.59 7.85 -2.39 -0.02 2.57 16 32 H 0.06 1.76 6.99 -2.39 -0.02 1.75 16 33 H 0.07 1.78 7.86 -2.39 -0.02 1.76 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.58 6.68 -2.39 -0.02 1.57 16 36 H 0.12 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.07 1.45 6.68 -2.39 -0.02 1.44 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.68 7.77 -2.39 -0.02 1.66 16 41 H 0.06 1.68 7.85 -2.39 -0.02 1.66 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.02 0.88 2.75 -2.38 -0.01 0.88 16 44 H 0.06 2.05 6.53 -2.38 -0.02 2.04 16 45 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -62.73 339.19 4.12 -58.61 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.22 Total: 28.92 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.32 Total: 0.63 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -3.06 Total: -109.49 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.70 Total: 44.53 kcal Total: -62.73 4.12 -58.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725194451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.065 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds