Wall clock time and date at job start Fri Apr 10 2020 17:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46500 * 109.47520 * 64.99751 * 4 2 1 6 6 C 1.36929 * 120.00587 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99833 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00671 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99676 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00378 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47151 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46973 * 120.00201 * 10 8 6 13 13 H 1.48497 * 109.47483 * 240.00248 * 10 8 6 14 14 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 15 15 N 1.46505 * 109.47119 * 294.99950 * 14 2 1 16 16 C 1.34773 * 119.99820 * 180.02562 * 15 14 2 17 17 O 1.21279 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99583 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.46957 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.35731 * 55.27690 * 19 18 16 21 21 C 1.50067 * 109.35437 * 295.68841 * 19 18 16 22 22 C 1.29448 * 124.07166 * 222.66419 * 21 19 18 23 23 C 1.50064 * 124.07611 * 0.46468 * 22 21 19 24 24 C 1.53018 * 110.15057 * 342.87273 * 23 22 21 25 25 C 1.53018 * 109.35721 * 174.99905 * 19 18 16 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 30 30 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 31 31 H 0.97009 * 119.99712 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99910 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.47065 * 55.00225 * 14 2 1 34 34 H 1.09000 * 109.46818 * 175.00170 * 14 2 1 35 35 H 0.97003 * 119.99621 * 0.02562 * 15 14 2 36 36 H 1.09003 * 109.47404 * 299.99927 * 18 16 15 37 37 H 1.09000 * 109.47421 * 60.00184 * 18 16 15 38 38 H 1.08001 * 117.96503 * 42.64035 * 21 19 18 39 39 H 1.07999 * 117.95838 * 180.45007 * 22 21 19 40 40 H 1.09003 * 109.35778 * 222.66567 * 23 22 21 41 41 H 1.08997 * 109.35721 * 103.08372 * 23 22 21 42 42 H 1.09000 * 109.64520 * 289.75248 * 24 23 22 43 43 H 1.08995 * 109.81941 * 169.21803 * 24 23 22 44 44 H 1.09002 * 109.64306 * 289.32454 * 25 19 18 45 45 H 1.08998 * 109.64373 * 49.95797 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0011 -0.4206 -3.6856 7 1 2.5614 -1.3383 -3.7866 8 6 1.6334 0.2960 -4.8162 9 7 0.9500 1.4142 -4.6931 10 14 2.1095 -0.3257 -6.5120 11 1 2.8695 -1.5946 -6.3786 12 1 0.8827 -0.5660 -7.3136 13 1 2.9544 0.6886 -7.1920 14 6 2.0401 -0.7213 1.2492 15 7 1.6525 0.0353 2.4424 16 6 1.9965 -0.4132 3.6659 17 8 2.6273 -1.4428 3.7791 18 6 1.5973 0.3648 4.8932 19 6 2.1086 -0.3558 6.1424 20 1 3.1848 -0.5064 6.0577 21 6 1.4302 -1.6892 6.2601 22 6 0.9765 -2.1767 7.3701 23 6 1.0566 -1.4722 8.6927 24 6 2.0903 -0.3458 8.6282 25 6 1.8116 0.4974 7.3774 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2952 31 1 1.1482 0.8592 -2.3518 32 1 0.6934 1.9152 -5.4831 33 1 1.6055 -1.7198 1.2950 34 1 3.1264 -0.7994 1.2055 35 1 1.1483 0.8590 2.3518 36 1 2.0312 1.3637 4.8473 37 1 0.5110 0.4422 4.9370 38 1 1.3129 -2.2787 5.3627 39 1 0.5112 -3.1509 7.3426 40 1 1.3466 -2.1849 9.4647 41 1 0.0808 -1.0534 8.9386 42 1 3.0921 -0.7708 8.5677 43 1 2.0109 0.2800 9.5171 44 1 2.4547 1.3775 7.3781 45 1 0.7657 0.8042 7.3680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732347361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:09 Heat of formation + Delta-G solvation = -42.102222 kcal Electronic energy + Delta-G solvation = -21389.829457 eV Core-core repulsion = 18213.481131 eV Total energy + Delta-G solvation = -3176.348326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13689 -38.47655 -36.78228 -34.34962 -32.98265 -32.37219 -31.21306 -30.07674 -27.89661 -26.26106 -25.09206 -22.87769 -22.48152 -21.98988 -20.49950 -19.71583 -18.16447 -17.33919 -16.77467 -16.28276 -15.92172 -15.63606 -14.70931 -14.56143 -14.45676 -14.06147 -13.78642 -13.49228 -13.20060 -13.00214 -12.90185 -12.67031 -12.47437 -12.33002 -12.28087 -12.04320 -11.71006 -11.14107 -11.06529 -10.92350 -10.79843 -10.70958 -10.56752 -10.42938 -10.33591 -10.03405 -9.76435 -9.61824 -9.13912 -8.99062 -8.88668 -6.92757 -5.77786 -3.06048 2.18933 2.64652 3.20488 3.43141 3.49144 3.51226 4.40895 4.45078 4.53515 4.59125 4.74328 4.90024 5.00422 5.07229 5.18519 5.18718 5.22890 5.31734 5.38851 5.40789 5.43164 5.51188 5.57424 5.63819 5.67251 5.81130 5.82215 5.96454 6.00346 6.06916 6.09481 6.13081 6.24914 6.38969 6.49774 6.58800 6.64771 6.77070 6.83395 6.86608 7.51554 7.70581 8.23588 8.41441 9.52743 10.10083 10.44895 11.45316 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.057352 B = 0.002324 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.099610 B =12044.712361 C =12172.640366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.541 6.541 18 C -0.135 4.135 19 C -0.043 4.043 20 H 0.088 0.912 21 C -0.133 4.133 22 C -0.172 4.172 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -0.587 26.781 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.212 4.212 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.379 5.379 16 C 0.295 3.705 17 O -0.418 6.418 18 C -0.175 4.175 19 C -0.062 4.062 20 H 0.106 0.894 21 C -0.151 4.151 22 C -0.190 4.190 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.154 4.154 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.596 -1.455 26.710 26.756 hybrid contribution -0.231 0.309 -1.183 1.245 sum -0.827 -1.146 25.527 25.566 Atomic orbital electron populations 1.21788 0.94693 1.01901 1.01458 1.21549 0.96684 1.00473 0.94240 0.90575 1.20579 0.96606 0.94206 0.85411 1.42350 1.66909 1.27691 1.00608 1.19288 1.28536 1.05389 0.83648 0.91098 1.24745 1.01071 0.97446 0.97892 1.69668 1.43681 1.16623 1.28368 0.86101 0.77587 0.77835 0.84591 1.20538 1.21884 1.21880 1.21396 1.00050 0.95248 0.83056 1.46132 1.57738 1.27921 1.06079 1.20664 0.79340 0.85843 0.84655 1.90697 1.39882 1.24559 1.86697 1.21724 1.03177 1.00046 0.92529 1.19834 1.00789 0.92792 0.92751 0.89436 1.22206 0.97760 0.96749 0.98398 1.22014 1.02396 1.00103 0.94497 1.20423 0.99321 0.97176 0.95702 1.21589 0.99441 0.97040 0.97700 1.21677 1.01877 0.97818 0.94005 0.91182 0.92868 0.93907 0.96141 0.96025 0.78217 0.93588 0.91483 0.91461 0.76572 0.88682 0.88831 0.87056 0.88237 0.91454 0.91226 0.91719 0.91736 0.91542 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 5 N -0.73 -18.35 5.33 -59.91 -0.32 -18.66 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.13 1.73 5.06 -4.04 -0.02 1.71 16 15 N -0.73 -8.20 5.28 -60.30 -0.32 -8.52 16 16 C 0.51 6.06 7.46 -10.99 -0.08 5.98 16 17 O -0.54 -8.49 14.24 5.56 0.08 -8.42 16 18 C -0.13 -1.11 5.14 -27.88 -0.14 -1.26 16 19 C -0.04 -0.39 2.12 -92.06 -0.19 -0.59 16 20 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 21 C -0.13 -1.39 8.41 -35.90 -0.30 -1.70 16 22 C -0.17 -1.58 9.80 -35.90 -0.35 -1.94 16 23 C -0.09 -0.65 6.11 -28.18 -0.17 -0.82 16 24 C -0.12 -0.82 6.01 -26.52 -0.16 -0.98 16 25 C -0.12 -0.81 5.30 -26.52 -0.14 -0.95 16 26 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 32 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.58 7.65 -40.82 -0.31 3.27 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 1.40 6.47 -52.49 -0.34 1.06 16 39 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -32.19 358.17 -9.16 -41.35 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.97 Total: 7.18 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.73 Total: -8.38 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.09 Total: -54.62 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.19 -9.16 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732347361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.752 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds