Wall clock time and date at job start Fri Apr 10 2020 17:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46500 * 109.47520 * 64.99751 * 4 2 1 6 6 C 1.36929 * 120.00587 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99833 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00671 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99676 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00378 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47151 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46973 * 120.00201 * 10 8 6 13 13 H 1.48497 * 109.47483 * 240.00248 * 10 8 6 14 14 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 15 15 N 1.46505 * 109.47119 * 294.99950 * 14 2 1 16 16 C 1.34773 * 119.99820 * 180.02562 * 15 14 2 17 17 O 1.21279 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99583 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.46957 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.35731 * 55.27690 * 19 18 16 21 21 C 1.50067 * 109.35437 * 295.68841 * 19 18 16 22 22 C 1.29448 * 124.07166 * 222.66419 * 21 19 18 23 23 C 1.50064 * 124.07611 * 0.46468 * 22 21 19 24 24 C 1.53018 * 110.15057 * 342.87273 * 23 22 21 25 25 C 1.53018 * 109.35721 * 174.99905 * 19 18 16 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 30 30 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 31 31 H 0.97009 * 119.99712 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99910 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.47065 * 55.00225 * 14 2 1 34 34 H 1.09000 * 109.46818 * 175.00170 * 14 2 1 35 35 H 0.97003 * 119.99621 * 0.02562 * 15 14 2 36 36 H 1.09003 * 109.47404 * 299.99927 * 18 16 15 37 37 H 1.09000 * 109.47421 * 60.00184 * 18 16 15 38 38 H 1.08001 * 117.96503 * 42.64035 * 21 19 18 39 39 H 1.07999 * 117.95838 * 180.45007 * 22 21 19 40 40 H 1.09003 * 109.35778 * 222.66567 * 23 22 21 41 41 H 1.08997 * 109.35721 * 103.08372 * 23 22 21 42 42 H 1.09000 * 109.64520 * 289.75248 * 24 23 22 43 43 H 1.08995 * 109.81941 * 169.21803 * 24 23 22 44 44 H 1.09002 * 109.64306 * 289.32454 * 25 19 18 45 45 H 1.08998 * 109.64373 * 49.95797 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0011 -0.4206 -3.6856 7 1 2.5614 -1.3383 -3.7866 8 6 1.6334 0.2960 -4.8162 9 7 0.9500 1.4142 -4.6931 10 14 2.1095 -0.3257 -6.5120 11 1 2.8695 -1.5946 -6.3786 12 1 0.8827 -0.5660 -7.3136 13 1 2.9544 0.6886 -7.1920 14 6 2.0401 -0.7213 1.2492 15 7 1.6525 0.0353 2.4424 16 6 1.9965 -0.4132 3.6659 17 8 2.6273 -1.4428 3.7791 18 6 1.5973 0.3648 4.8932 19 6 2.1086 -0.3558 6.1424 20 1 3.1848 -0.5064 6.0577 21 6 1.4302 -1.6892 6.2601 22 6 0.9765 -2.1767 7.3701 23 6 1.0566 -1.4722 8.6927 24 6 2.0903 -0.3458 8.6282 25 6 1.8116 0.4974 7.3774 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2952 31 1 1.1482 0.8592 -2.3518 32 1 0.6934 1.9152 -5.4831 33 1 1.6055 -1.7198 1.2950 34 1 3.1264 -0.7994 1.2055 35 1 1.1483 0.8590 2.3518 36 1 2.0312 1.3637 4.8473 37 1 0.5110 0.4422 4.9370 38 1 1.3129 -2.2787 5.3627 39 1 0.5112 -3.1509 7.3426 40 1 1.3466 -2.1849 9.4647 41 1 0.0808 -1.0534 8.9386 42 1 3.0921 -0.7708 8.5677 43 1 2.0109 0.2800 9.5171 44 1 2.4547 1.3775 7.3781 45 1 0.7657 0.8042 7.3680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732347361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:08 Heat of formation + Delta-G solvation = -62.097757 kcal Electronic energy + Delta-G solvation = -21390.696529 eV Core-core repulsion = 18213.481131 eV Total energy + Delta-G solvation = -3177.215397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04874 -39.25360 -38.13765 -35.94383 -34.14733 -33.51833 -31.88179 -31.84655 -28.74094 -27.61867 -26.60906 -24.40044 -23.21620 -22.87947 -21.59177 -20.95493 -19.20251 -18.82248 -17.86060 -17.29020 -16.85314 -16.62535 -16.44606 -15.76099 -15.49122 -15.26096 -15.03241 -14.66495 -14.57481 -14.02828 -13.82515 -13.59014 -13.57324 -13.46657 -13.16917 -12.98402 -12.94317 -12.83559 -12.37088 -12.17213 -12.13448 -11.99877 -11.71561 -11.69474 -11.66219 -11.40435 -11.02715 -10.96718 -10.63782 -10.04172 -9.84927 -9.00788 -7.96866 -5.25138 1.44116 1.47061 1.47361 1.57733 1.72143 2.25293 2.56036 3.36815 3.71522 3.73747 3.83645 3.91376 3.96129 4.05375 4.08811 4.31867 4.32912 4.43512 4.53236 4.54306 4.56251 4.69631 4.73411 4.77817 4.84276 4.87699 4.92191 4.94394 5.04487 5.10122 5.11807 5.12751 5.25257 5.33922 5.42418 5.45438 5.48932 5.50341 5.53735 5.84070 6.11502 6.26157 6.62474 7.32644 7.33047 8.07690 8.32385 9.26749 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.057352 B = 0.002324 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.099610 B =12044.712361 C =12172.640366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.073 0.927 8 C -0.075 4.075 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.718 5.718 16 C 0.505 3.495 17 O -0.584 6.584 18 C -0.126 4.126 19 C -0.042 4.042 20 H 0.066 0.934 21 C -0.152 4.152 22 C -0.167 4.167 23 C -0.090 4.090 24 C -0.122 4.122 25 C -0.111 4.111 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 0.223 28.469 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.268 4.268 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.014 3.986 15 N -0.370 5.370 16 C 0.293 3.707 17 O -0.464 6.464 18 C -0.165 4.165 19 C -0.061 4.061 20 H 0.084 0.916 21 C -0.171 4.171 22 C -0.185 4.185 23 C -0.126 4.126 24 C -0.159 4.159 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.210 0.790 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.252 0.748 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.969 -0.647 28.426 28.450 hybrid contribution -0.105 -0.028 -1.638 1.642 sum -1.074 -0.675 26.788 26.818 Atomic orbital electron populations 1.21721 0.93865 1.01803 1.01816 1.21326 0.97152 1.00044 0.92719 0.90234 1.20732 0.96467 0.94115 0.85804 1.42513 1.66775 1.27829 1.01330 1.19657 1.27807 1.05259 0.85070 0.90931 1.25555 1.01717 0.97939 1.01541 1.69809 1.45094 1.17834 1.29070 0.85073 0.77115 0.77594 0.79971 1.19297 1.21911 1.21899 1.21066 0.99239 0.94951 0.83364 1.45998 1.57672 1.28167 1.05204 1.21379 0.78306 0.85433 0.85536 1.90687 1.41848 1.26608 1.87269 1.21768 1.04520 1.00371 0.89887 1.19820 0.99300 0.92600 0.94349 0.91560 1.22144 0.99469 0.97738 0.97718 1.22239 1.01051 1.00009 0.95229 1.20484 1.00264 0.97474 0.94425 1.21622 0.98654 0.97113 0.98534 1.21669 1.02827 0.97735 0.92612 0.93902 0.93204 0.90374 0.96368 0.96276 0.79035 0.93926 0.92328 0.92525 0.74845 0.85911 0.86775 0.89995 0.88434 0.90666 0.89876 0.92781 0.89882 0.90107 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.94 71.98 0.64 -3.16 16 2 C -0.09 -2.79 2.46 -10.79 -0.03 -2.82 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.16 6.24 5.65 86.38 0.49 6.73 16 5 N -0.74 -37.57 5.33 -343.45 -1.83 -39.40 16 6 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 9 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 10 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 14 C 0.14 3.72 5.06 86.38 0.44 4.16 16 15 N -0.72 -15.02 5.28 -463.07 -2.45 -17.47 16 16 C 0.51 11.54 7.46 87.66 0.65 12.19 16 17 O -0.58 -18.64 14.24 -3.03 -0.04 -18.69 16 18 C -0.13 -1.79 5.14 29.85 0.15 -1.63 16 19 C -0.04 -0.71 2.12 -11.73 -0.02 -0.73 16 20 H 0.07 1.39 7.96 -2.39 -0.02 1.37 16 21 C -0.15 -3.18 8.41 27.03 0.23 -2.95 16 22 C -0.17 -2.96 9.80 27.03 0.27 -2.69 16 23 C -0.09 -1.12 6.11 29.66 0.18 -0.94 16 24 C -0.12 -1.39 6.01 30.73 0.18 -1.20 16 25 C -0.11 -1.24 5.30 30.73 0.16 -1.08 16 26 H 0.04 1.46 7.18 -2.39 -0.02 1.44 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.64 7.18 -2.39 -0.02 1.62 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.38 19.93 6.85 -92.70 -0.63 19.30 16 32 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 6.26 7.65 -92.71 -0.71 5.55 16 36 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 2.17 6.47 -2.91 -0.02 2.15 16 39 H 0.10 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.72 8.10 -2.39 -0.02 0.71 16 Total: -1.00 -70.45 358.17 2.26 -68.19 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.38 Total: 28.58 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.65 Total: -11.06 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -3.99 Total: -115.48 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.04 Total: -18.69 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -70.45 2.26 -68.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732347361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.096 kcal (2) G-P(sol) polarization free energy of solvation -70.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds