Wall clock time and date at job start Fri Apr 10 2020 17:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47494 * 2 1 4 4 C 1.53005 * 109.46896 * 120.00338 * 2 1 3 5 5 N 1.46505 * 109.46904 * 294.99568 * 4 2 1 6 6 C 1.36931 * 119.99788 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99680 * 179.72358 * 6 5 4 9 9 N 1.31614 * 119.99888 * 0.27479 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 180.27671 * 8 6 5 11 11 H 1.48508 * 109.46872 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 119.99997 * 10 8 6 13 13 H 1.48498 * 109.47018 * 240.00044 * 10 8 6 14 14 C 1.53004 * 109.46954 * 239.99639 * 2 1 3 15 15 N 1.46503 * 109.46834 * 64.99929 * 14 2 1 16 16 C 1.34772 * 120.00149 * 179.97438 * 15 14 2 17 17 O 1.21290 * 119.99766 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00297 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.47323 * 179.97438 * 18 16 15 20 20 H 1.09007 * 109.35260 * 55.27913 * 19 18 16 21 21 C 1.50068 * 109.36117 * 295.69135 * 19 18 16 22 22 C 1.29437 * 124.07616 * 222.66056 * 21 19 18 23 23 C 1.50063 * 124.07519 * 0.46529 * 22 21 19 24 24 C 1.53023 * 110.15023 * 342.87282 * 23 22 21 25 25 C 1.53021 * 109.35749 * 174.99894 * 19 18 16 26 26 H 1.08996 * 109.46590 * 299.99871 * 1 2 3 27 27 H 1.08994 * 109.47208 * 60.00361 * 1 2 3 28 28 H 1.08998 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46946 * 175.00327 * 4 2 1 30 30 H 1.08993 * 109.47679 * 54.99869 * 4 2 1 31 31 H 0.97000 * 119.99792 * 0.02562 * 5 4 2 32 32 H 0.97005 * 119.99715 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46978 * 184.99915 * 14 2 1 34 34 H 1.08994 * 109.47113 * 305.00200 * 14 2 1 35 35 H 0.97005 * 119.99578 * 0.02562 * 15 14 2 36 36 H 1.08999 * 109.47051 * 299.99980 * 18 16 15 37 37 H 1.09007 * 109.47321 * 60.00284 * 18 16 15 38 38 H 1.08003 * 117.96042 * 42.63726 * 21 19 18 39 39 H 1.08000 * 117.96204 * 180.44306 * 22 21 19 40 40 H 1.08999 * 109.36211 * 222.66064 * 23 22 21 41 41 H 1.09008 * 109.36104 * 103.07755 * 23 22 21 42 42 H 1.09002 * 109.64229 * 289.74884 * 24 23 22 43 43 H 1.08997 * 109.81978 * 169.22472 * 24 23 22 44 44 H 1.09002 * 109.64487 * 289.32758 * 25 19 18 45 45 H 1.08999 * 109.64264 * 49.96638 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 1.6525 0.0353 2.4424 6 6 2.0019 -0.4204 3.6855 7 1 2.5636 -1.3373 3.7864 8 6 1.6397 0.2996 4.8158 9 7 0.9557 1.4173 4.6928 10 14 2.1231 -0.3179 6.5112 11 1 2.8817 -1.5876 6.3778 12 1 2.9715 0.6978 7.1846 13 1 0.8998 -0.5553 7.3189 14 6 2.0400 -0.7214 -1.2492 15 7 1.6524 0.0352 -2.4424 16 6 1.9963 -0.4132 -3.6659 17 8 2.6263 -1.4434 -3.7792 18 6 1.5981 0.3653 -4.8932 19 6 2.1090 -0.3553 -6.1424 20 1 1.7408 -1.3813 -6.1435 21 6 3.6096 -0.3682 -6.1306 22 6 4.3450 -0.1350 -7.1698 23 6 3.8001 0.1908 -8.5295 24 6 2.3240 -0.2038 -8.6142 25 6 1.5979 0.3683 -7.3901 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1264 -0.7995 1.2056 30 1 1.6054 -1.7198 1.2952 31 1 1.1483 0.8590 2.3518 32 1 0.7022 1.9202 5.4826 33 1 3.1263 -0.7996 -1.2056 34 1 1.6054 -1.7198 -1.2951 35 1 1.1488 0.8594 -2.3517 36 1 0.5118 0.4436 -4.9372 37 1 2.0328 1.3639 -4.8470 38 1 4.1068 -0.5853 -5.1967 39 1 5.4177 -0.1771 -7.0509 40 1 4.3641 -0.3557 -9.2854 41 1 3.8990 1.2610 -8.7116 42 1 2.2348 -1.2901 -8.6187 43 1 1.8843 0.2036 -9.5246 44 1 0.5246 0.2081 -7.4928 45 1 1.8060 1.4349 -7.3061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732347363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:14 Heat of formation + Delta-G solvation = -42.096245 kcal Electronic energy + Delta-G solvation = -21383.122345 eV Core-core repulsion = 18206.774278 eV Total energy + Delta-G solvation = -3176.348067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13528 -38.47512 -36.78120 -34.34906 -32.98154 -32.37207 -31.21106 -30.07688 -27.89662 -26.25995 -25.09180 -22.87788 -22.47899 -21.98890 -20.50030 -19.71437 -18.15961 -17.34085 -16.77492 -16.29346 -15.95525 -15.54558 -14.81946 -14.51329 -14.45526 -14.03791 -13.70216 -13.60467 -13.13415 -13.05863 -12.91431 -12.59600 -12.49498 -12.34447 -12.28515 -12.05372 -11.69160 -11.14230 -11.06776 -10.92629 -10.80098 -10.70103 -10.57116 -10.42386 -10.33958 -10.03164 -9.76415 -9.61876 -9.13581 -8.99044 -8.88678 -6.92779 -5.77792 -3.06027 2.19408 2.64629 3.20496 3.43154 3.49142 3.51229 4.41026 4.45208 4.53547 4.59118 4.74429 4.90140 5.00628 5.07077 5.18426 5.19750 5.22331 5.32035 5.38601 5.41133 5.43312 5.51248 5.57425 5.64026 5.67285 5.81540 5.81887 5.96593 5.99941 6.06993 6.10058 6.13086 6.24844 6.38956 6.49851 6.59199 6.64792 6.77058 6.83878 6.86701 7.51546 7.70609 8.23593 8.41412 9.52769 10.10098 10.44947 11.45305 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050936 B = 0.002348 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.580670 B =11923.505548 C =12155.098048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.541 6.541 18 C -0.135 4.135 19 C -0.043 4.043 20 H 0.087 0.913 21 C -0.133 4.133 22 C -0.172 4.172 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 0.269 -26.696 26.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.379 5.379 16 C 0.295 3.705 17 O -0.418 6.418 18 C -0.175 4.175 19 C -0.062 4.062 20 H 0.105 0.895 21 C -0.151 4.151 22 C -0.190 4.190 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.154 4.154 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.819 -0.595 -26.625 26.644 hybrid contribution -0.078 0.402 1.192 1.260 sum 0.741 -0.193 -25.433 25.445 Atomic orbital electron populations 1.21785 0.94684 1.01907 1.01458 1.21551 0.96695 1.00467 0.94240 0.90587 1.20580 0.96598 0.94214 0.85411 1.42350 1.66900 1.27700 1.00609 1.19289 1.28584 1.05333 0.83666 0.91096 1.24744 1.01102 0.97400 0.97894 1.69666 1.43706 1.16578 1.28380 0.86104 0.77612 0.77823 0.84595 1.20535 1.21879 1.21881 1.21397 1.00032 0.95265 0.83055 1.46131 1.57764 1.27891 1.06080 1.20667 0.79361 0.85811 0.84668 1.90700 1.39814 1.24609 1.86720 1.21722 1.02843 1.00345 0.92564 1.19832 0.93505 1.00103 0.92712 0.89451 1.22204 0.95057 0.98874 0.99008 1.22012 0.99368 1.02842 0.94768 1.20426 0.95738 1.01111 0.95357 1.21590 0.95230 1.01169 0.97776 1.21677 0.99634 1.00010 0.94056 0.91185 0.93904 0.92855 0.96156 0.96008 0.78217 0.93587 0.91496 0.91447 0.76572 0.88695 0.88819 0.87048 0.88224 0.91451 0.91218 0.91726 0.91739 0.91554 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.69 2.46 -90.61 -0.22 -1.91 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 5 N -0.73 -18.35 5.33 -59.90 -0.32 -18.67 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 15 N -0.73 -8.20 5.28 -60.29 -0.32 -8.52 16 16 C 0.51 6.07 7.46 -10.99 -0.08 5.98 16 17 O -0.54 -8.50 14.24 5.55 0.08 -8.42 16 18 C -0.13 -1.11 5.14 -27.89 -0.14 -1.26 16 19 C -0.04 -0.39 2.12 -92.07 -0.19 -0.58 16 20 H 0.09 0.92 7.96 -51.92 -0.41 0.50 16 21 C -0.13 -1.41 8.41 -35.90 -0.30 -1.71 16 22 C -0.17 -1.60 9.80 -35.90 -0.35 -1.95 16 23 C -0.09 -0.65 6.11 -28.18 -0.17 -0.83 16 24 C -0.12 -0.82 6.01 -26.51 -0.16 -0.98 16 25 C -0.12 -0.81 5.30 -26.52 -0.14 -0.95 16 26 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 27 H 0.04 0.50 7.18 -51.93 -0.37 0.12 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.38 9.99 6.85 -40.82 -0.28 9.72 16 32 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.58 7.66 -40.82 -0.31 3.27 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 38 H 0.11 1.42 6.47 -52.48 -0.34 1.08 16 39 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 42 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.44 8.10 -51.93 -0.42 0.01 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -32.20 358.18 -9.16 -41.36 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.98 Total: 7.21 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.73 Total: -8.40 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.09 Total: -54.62 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.20 -9.16 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732347363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.738 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds