Wall clock time and date at job start Fri Apr 10 2020 17:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 H 1.08999 * 115.55504 * 34.28113 * 18 16 15 20 20 C 1.53084 * 117.50969 * 248.50183 * 18 16 15 21 21 C 1.52552 * 117.51112 * 179.97438 * 18 16 15 22 22 C 1.53877 * 120.82429 * 357.25591 * 21 18 16 23 23 C 1.54994 * 104.06104 * 192.35800 * 22 21 18 24 24 C 1.54921 * 102.82144 * 37.56824 * 23 22 21 25 25 C 1.53483 * 121.09416 * 217.88504 * 21 18 16 26 26 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 30 30 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 34 34 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 35 35 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 36 36 H 1.08994 * 117.51276 * 359.97438 * 20 18 16 37 37 H 1.09006 * 117.51207 * 145.08559 * 20 18 16 38 38 H 1.09001 * 110.50785 * 311.00010 * 22 21 18 39 39 H 1.09000 * 110.51260 * 73.71010 * 22 21 18 40 40 H 1.09001 * 110.74113 * 279.23191 * 23 22 21 41 41 H 1.08999 * 110.74204 * 155.89930 * 23 22 21 42 42 H 1.09005 * 110.48227 * 203.59559 * 24 23 22 43 43 H 1.08999 * 110.59507 * 81.01816 * 24 23 22 44 44 H 1.09007 * 110.06974 * 263.31502 * 25 21 18 45 45 H 1.09007 * 110.06557 * 24.78388 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 1 1.5821 1.4489 -4.7786 20 6 0.5538 -0.2633 -5.8205 21 6 2.0168 -0.1939 -6.2493 22 6 2.8708 -1.4703 -6.3459 23 6 3.3314 -1.5040 -7.8255 24 6 3.5881 -0.0089 -8.1398 25 6 2.4656 0.7355 -7.3853 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7995 1.2056 30 1 1.6054 -1.7198 1.2950 31 1 1.1483 0.8591 2.3518 32 1 0.6807 1.9070 5.4838 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.1483 0.8592 -2.3518 36 1 0.1563 -1.2395 -5.5429 37 1 -0.1484 0.4073 -6.3160 38 1 3.7310 -1.4056 -5.6796 39 1 2.2709 -2.3499 -6.1125 40 1 2.5449 -1.9037 -8.4656 41 1 4.2484 -2.0837 -7.9312 42 1 3.5132 0.1738 -9.2118 43 1 4.5659 0.2985 -7.7689 44 1 1.6310 0.9344 -8.0577 45 1 2.8462 1.6709 -6.9750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732358948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:43 Heat of formation + Delta-G solvation = -26.137163 kcal Electronic energy + Delta-G solvation = -21585.463552 eV Core-core repulsion = 18409.807523 eV Total energy + Delta-G solvation = -3175.656029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.46743 -38.45306 -36.70661 -34.36353 -34.32556 -32.42880 -30.05160 -28.92066 -26.99244 -25.93073 -25.29508 -23.76124 -22.22615 -20.94637 -20.52716 -19.85667 -18.95250 -17.32973 -16.78655 -16.08651 -15.69033 -15.44560 -15.01526 -14.64068 -14.35366 -14.06073 -13.64837 -13.57502 -13.23172 -12.97519 -12.70074 -12.55195 -12.39530 -12.27334 -12.03279 -11.37159 -11.27946 -11.10135 -11.05801 -10.90068 -10.78143 -10.69143 -10.58212 -10.49400 -10.40814 -10.10795 -10.05389 -9.70643 -9.49178 -8.98043 -8.86931 -6.92183 -5.76800 -3.05204 2.47318 3.11961 3.44802 3.48907 3.50074 3.56728 4.18664 4.35256 4.53582 4.59726 4.62664 4.81793 4.90644 4.99132 5.08035 5.23099 5.27657 5.39047 5.39912 5.44093 5.51130 5.55477 5.58009 5.65588 5.72651 5.75871 5.82567 5.88986 5.96980 5.98240 6.00940 6.11908 6.15916 6.25195 6.31020 6.40097 6.53202 6.65617 6.77825 6.87298 7.53735 7.70192 8.25526 8.42472 9.53535 10.10915 10.45774 11.46176 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048531 B = 0.002475 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.809787 B =11311.960416 C =11545.238339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.722 5.722 16 C 0.539 3.461 17 O -0.538 6.538 18 C -0.183 4.183 19 H 0.121 0.879 20 C -0.141 4.141 21 C -0.094 4.094 22 C -0.076 4.076 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.089 4.089 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -0.637 -26.406 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.373 5.373 16 C 0.326 3.674 17 O -0.416 6.416 18 C -0.204 4.204 19 H 0.139 0.861 20 C -0.179 4.179 21 C -0.094 4.094 22 C -0.113 4.113 23 C -0.166 4.166 24 C -0.160 4.160 25 C -0.127 4.127 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.682 -1.482 -26.319 26.370 hybrid contribution -0.272 0.548 1.209 1.355 sum 0.410 -0.935 -25.111 25.131 Atomic orbital electron populations 1.21787 0.94673 1.01901 1.01472 1.21551 0.96709 1.00478 0.94208 0.90576 1.20572 0.96597 0.94190 0.85399 1.42336 1.67056 1.27582 1.00565 1.19198 1.28702 1.05471 0.83648 0.91212 1.24740 1.01014 0.97440 0.97871 1.69649 1.43459 1.16678 1.28595 0.86246 0.78007 0.77712 0.84099 1.21260 1.21702 1.21266 1.21404 1.00053 0.95230 0.82952 1.46037 1.57467 1.27974 1.05815 1.19631 0.79092 0.85026 0.83695 1.90685 1.39867 1.24545 1.86472 1.22308 1.07619 0.99961 0.90529 0.86083 1.23040 0.91663 1.02410 1.00743 1.21779 0.96393 0.98478 0.92784 1.21867 0.99433 0.94713 0.95329 1.22567 1.00912 0.96098 0.97002 1.22337 0.98500 0.95585 0.99602 1.21681 0.98372 0.97409 0.95211 0.92866 0.91176 0.93894 0.96153 0.96032 0.78211 0.93484 0.91437 0.91447 0.76538 0.88203 0.87865 0.89890 0.91475 0.91719 0.91597 0.91730 0.91549 0.91316 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.76 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 5 N -0.73 -18.43 5.33 -59.91 -0.32 -18.75 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.94 -28.24 13.06 55.49 0.72 -27.51 16 10 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 15 N -0.72 -8.58 5.28 -60.29 -0.32 -8.90 16 16 C 0.54 6.86 7.61 -10.99 -0.08 6.77 16 17 O -0.54 -8.58 13.70 5.56 0.08 -8.51 16 18 C -0.18 -1.75 6.06 -91.96 -0.56 -2.30 16 19 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 20 C -0.14 -1.18 9.94 -26.88 -0.27 -1.45 16 21 C -0.09 -0.86 2.45 -154.23 -0.38 -1.24 16 22 C -0.08 -0.80 4.77 -25.22 -0.12 -0.92 16 23 C -0.13 -1.04 6.91 -24.66 -0.17 -1.21 16 24 C -0.12 -0.89 6.84 -24.99 -0.17 -1.06 16 25 C -0.09 -0.66 6.55 -25.76 -0.17 -0.83 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 28 H 0.04 0.52 7.18 -51.93 -0.37 0.14 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 10.05 6.85 -40.82 -0.28 9.77 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 3.90 7.65 -40.82 -0.31 3.59 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.05 6.97 -51.93 -0.36 0.69 16 39 H 0.07 0.77 8.00 -51.93 -0.42 0.36 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -31.79 359.09 -9.55 -41.34 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -8.00 Total: 7.80 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.10 Total: -8.40 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.09 Total: -55.16 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.79 -9.55 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732358948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.202 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds