Wall clock time and date at job start Fri Apr 10 2020 17:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 H 1.08999 * 115.55504 * 34.28113 * 18 16 15 20 20 C 1.53084 * 117.50969 * 248.50183 * 18 16 15 21 21 C 1.52552 * 117.51112 * 179.97438 * 18 16 15 22 22 C 1.53877 * 120.82429 * 357.25591 * 21 18 16 23 23 C 1.54994 * 104.06104 * 192.35800 * 22 21 18 24 24 C 1.54921 * 102.82144 * 37.56824 * 23 22 21 25 25 C 1.53483 * 121.09416 * 217.88504 * 21 18 16 26 26 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 30 30 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 34 34 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 35 35 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 36 36 H 1.08994 * 117.51276 * 359.97438 * 20 18 16 37 37 H 1.09006 * 117.51207 * 145.08559 * 20 18 16 38 38 H 1.09001 * 110.50785 * 311.00010 * 22 21 18 39 39 H 1.09000 * 110.51260 * 73.71010 * 22 21 18 40 40 H 1.09001 * 110.74113 * 279.23191 * 23 22 21 41 41 H 1.08999 * 110.74204 * 155.89930 * 23 22 21 42 42 H 1.09005 * 110.48227 * 203.59559 * 24 23 22 43 43 H 1.08999 * 110.59507 * 81.01816 * 24 23 22 44 44 H 1.09007 * 110.06974 * 263.31502 * 25 21 18 45 45 H 1.09007 * 110.06557 * 24.78388 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 1 1.5821 1.4489 -4.7786 20 6 0.5538 -0.2633 -5.8205 21 6 2.0168 -0.1939 -6.2493 22 6 2.8708 -1.4703 -6.3459 23 6 3.3314 -1.5040 -7.8255 24 6 3.5881 -0.0089 -8.1398 25 6 2.4656 0.7355 -7.3853 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7995 1.2056 30 1 1.6054 -1.7198 1.2950 31 1 1.1483 0.8591 2.3518 32 1 0.6807 1.9070 5.4838 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.1483 0.8592 -2.3518 36 1 0.1563 -1.2395 -5.5429 37 1 -0.1484 0.4073 -6.3160 38 1 3.7310 -1.4056 -5.6796 39 1 2.2709 -2.3499 -6.1125 40 1 2.5449 -1.9037 -8.4656 41 1 4.2484 -2.0837 -7.9312 42 1 3.5132 0.1738 -9.2118 43 1 4.5659 0.2985 -7.7689 44 1 1.6310 0.9344 -8.0577 45 1 2.8462 1.6709 -6.9750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732358948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:42 Heat of formation + Delta-G solvation = -45.511287 kcal Electronic energy + Delta-G solvation = -21586.303677 eV Core-core repulsion = 18409.807523 eV Total energy + Delta-G solvation = -3176.496154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35632 -39.36552 -38.07182 -35.94074 -35.07334 -34.04659 -31.89863 -29.57801 -28.09982 -27.41962 -26.30893 -25.03269 -23.76615 -21.63984 -21.56915 -21.06103 -19.78864 -19.13624 -17.93168 -17.24035 -16.55793 -16.52221 -16.30812 -15.79387 -15.61049 -15.47770 -15.10843 -14.79238 -14.34944 -14.15851 -13.85098 -13.61641 -13.56186 -13.32757 -13.07852 -12.96681 -12.77923 -12.22797 -12.19290 -12.01298 -11.99867 -11.94980 -11.75006 -11.70499 -11.66155 -11.39627 -11.24291 -10.94761 -10.89424 -10.42501 -10.06164 -9.00922 -7.96397 -5.24955 1.46887 1.49813 1.52823 1.55931 2.14338 2.56056 2.82384 3.36949 3.48514 3.66548 3.71529 3.83600 3.94219 3.96571 4.03371 4.09079 4.30650 4.33609 4.35685 4.52959 4.62452 4.68770 4.74387 4.78188 4.79333 4.90112 4.92408 4.94212 5.02921 5.06696 5.09526 5.11083 5.13199 5.24296 5.32365 5.36529 5.40771 5.45412 5.48178 5.48732 5.54640 6.26193 6.58742 7.28279 7.32931 8.07731 8.32460 9.26829 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048531 B = 0.002475 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.809787 B =11311.960416 C =11545.238339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.078 0.922 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.249 4.249 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.974 3.026 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.278 1.278 14 C 0.140 3.860 15 N -0.713 5.713 16 C 0.534 3.466 17 O -0.577 6.577 18 C -0.187 4.187 19 H 0.147 0.853 20 C -0.127 4.127 21 C -0.102 4.102 22 C -0.078 4.078 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.085 4.085 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 0.062 -28.064 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.381 4.381 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.803 3.197 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.015 3.985 15 N -0.365 5.365 16 C 0.322 3.678 17 O -0.457 6.457 18 C -0.208 4.208 19 H 0.165 0.835 20 C -0.165 4.165 21 C -0.103 4.103 22 C -0.116 4.116 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.122 4.122 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.209 0.791 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.204 -0.788 -28.004 28.016 hybrid contribution -0.090 0.252 1.681 1.702 sum 0.114 -0.536 -26.323 26.329 Atomic orbital electron populations 1.21715 0.93824 1.01853 1.01769 1.21327 0.97194 1.00007 0.92724 0.90345 1.20717 0.96455 0.94113 0.85733 1.42500 1.66934 1.27724 1.01301 1.19591 1.28027 1.05404 0.85054 0.90930 1.25560 1.01618 0.97917 1.01563 1.69798 1.44877 1.17902 1.29233 0.85207 0.77882 0.77196 0.79445 1.20475 1.21942 1.20459 1.21087 0.99271 0.94967 0.83141 1.45905 1.57350 1.28195 1.05007 1.20258 0.78246 0.84728 0.84593 1.90680 1.41570 1.26415 1.87038 1.22357 1.08663 1.00803 0.88986 0.83525 1.23125 0.91521 1.02257 0.99558 1.21899 0.96979 0.98171 0.93248 1.21772 0.98426 0.94998 0.96384 1.22554 1.01116 0.97234 0.95367 1.22356 0.98366 0.94517 1.00721 1.21700 0.98889 0.96993 0.94649 0.93094 0.93855 0.90521 0.96377 0.96198 0.79055 0.93908 0.92473 0.92103 0.74956 0.89444 0.84979 0.92805 0.93442 0.90781 0.91692 0.89967 0.92069 0.89540 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.94 71.98 0.64 -3.21 16 2 C -0.09 -2.84 2.46 -10.79 -0.03 -2.87 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.16 6.31 5.65 86.38 0.49 6.80 16 5 N -0.74 -37.76 5.33 -343.46 -1.83 -39.59 16 6 C -0.25 -14.09 9.99 84.03 0.84 -13.26 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 8 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 9 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 10 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.14 3.84 5.06 86.38 0.44 4.27 16 15 N -0.71 -15.94 5.28 -463.06 -2.45 -18.39 16 16 C 0.53 13.15 7.61 87.66 0.67 13.81 16 17 O -0.58 -18.77 13.70 -3.04 -0.04 -18.81 16 18 C -0.19 -3.18 6.06 -11.66 -0.07 -3.25 16 19 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 20 C -0.13 -1.81 9.94 30.50 0.30 -1.51 16 21 C -0.10 -1.71 2.45 -52.00 -0.13 -1.84 16 22 C -0.08 -1.66 4.77 31.57 0.15 -1.51 16 23 C -0.13 -1.93 6.91 31.93 0.22 -1.71 16 24 C -0.12 -1.52 6.84 31.72 0.22 -1.31 16 25 C -0.09 -1.02 6.55 31.23 0.20 -0.81 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.49 7.18 -2.39 -0.02 1.47 16 28 H 0.08 1.67 7.18 -2.39 -0.02 1.65 16 29 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.38 20.04 6.85 -92.71 -0.63 19.40 16 32 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.41 7.03 7.65 -92.71 -0.71 6.32 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.05 1.44 6.97 -2.39 -0.02 1.42 16 39 H 0.05 1.15 8.00 -2.39 -0.02 1.13 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -69.25 359.09 2.03 -67.23 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.38 Total: 30.08 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 4.41 Total: -10.21 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -3.99 Total: -116.74 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.04 Total: -18.81 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -69.25 2.03 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732358948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.716 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds