Wall clock time and date at job start Fri Apr 10 2020 17:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50699 * 119.99671 * 2 1 4 4 C 1.53008 * 109.47099 * 121.55720 * 3 2 1 5 5 C 1.50699 * 112.90473 * 285.32360 * 4 3 2 6 6 O 1.21277 * 120.00362 * 135.52294 * 5 4 3 7 7 N 1.34780 * 120.00010 * 315.52476 * 5 4 3 8 8 C 1.46507 * 119.99787 * 175.27579 * 7 5 4 9 9 C 1.53004 * 109.46843 * 180.02562 * 8 7 5 10 10 H 1.09006 * 109.46827 * 55.00032 * 9 8 7 11 11 C 1.52999 * 109.47351 * 295.00389 * 9 8 7 12 12 C 1.53001 * 109.46813 * 175.00051 * 9 8 7 13 13 N 1.46502 * 109.47102 * 185.00140 * 12 9 8 14 14 C 1.36930 * 120.00079 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99897 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99838 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47525 * 60.00002 * 18 16 14 20 20 H 1.48497 * 109.47287 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47551 * 300.00114 * 18 16 14 22 22 C 1.53775 * 113.61406 * 56.57621 * 4 3 2 23 23 C 1.53779 * 87.08346 * 89.11959 * 22 4 3 24 24 C 1.53779 * 113.61392 * 154.07615 * 4 3 2 25 25 H 1.07997 * 120.00780 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99393 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00780 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47539 * 1.55366 * 3 2 1 29 29 H 1.09007 * 109.47167 * 241.55391 * 3 2 1 30 30 H 0.97000 * 120.00254 * 355.28351 * 7 5 4 31 31 H 1.08992 * 109.47162 * 299.99926 * 8 7 5 32 32 H 1.08994 * 109.46661 * 60.00218 * 8 7 5 33 33 H 1.08999 * 109.46977 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.46649 * 300.00110 * 11 9 8 35 35 H 1.08999 * 109.47255 * 59.99956 * 11 9 8 36 36 H 1.09005 * 109.47210 * 304.99938 * 12 9 8 37 37 H 1.08999 * 109.46934 * 65.00481 * 12 9 8 38 38 H 0.97005 * 120.00052 * 0.02562 * 13 12 9 39 39 H 0.97001 * 120.00138 * 179.97438 * 17 16 14 40 40 H 1.08993 * 113.61681 * 334.56360 * 22 4 3 41 41 H 1.09000 * 113.68630 * 203.67796 * 22 4 3 42 42 H 1.08999 * 113.61782 * 139.97777 * 23 22 4 43 43 H 1.08998 * 113.61203 * 270.88794 * 23 22 4 44 44 H 1.09006 * 113.61661 * 156.32993 * 24 4 3 45 45 H 1.09005 * 113.61910 * 25.43118 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0633 1.3051 0.0000 4 6 2.9722 1.3694 1.2292 5 6 2.2150 1.6328 2.5053 6 8 2.4688 0.9935 3.5041 7 7 1.2557 2.5790 2.5366 8 6 0.4491 2.7647 3.7455 9 6 -0.5591 3.8927 3.5176 10 1 -1.1517 3.6762 2.6287 11 6 0.1884 5.2134 3.3229 12 6 -1.4831 4.0038 4.7320 13 7 -2.5222 5.0016 4.4654 14 6 -3.4697 5.2741 5.4156 15 1 -3.4513 4.7532 6.3615 16 6 -4.4539 6.2200 5.1631 17 7 -4.4760 6.8552 4.0106 18 14 -5.7460 6.5922 6.4597 19 1 -5.0821 7.0858 7.6929 20 1 -6.6759 7.6309 5.9480 21 1 -6.5078 5.3556 6.7688 22 6 3.9573 0.1929 1.3291 23 6 4.9332 1.0417 0.4973 24 6 4.1985 2.2781 1.0418 25 1 -0.5401 0.9352 0.0004 26 1 -0.5399 -0.9354 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3554 2.1334 0.0279 29 1 2.6690 1.3751 -0.9036 30 1 1.0992 3.1370 1.7588 31 1 -0.0841 1.8415 3.9718 32 1 1.1004 3.0222 4.5807 33 1 -0.5300 6.0170 3.1610 34 1 0.7810 5.4298 4.2118 35 1 0.8467 5.1342 2.4577 36 1 -1.9486 3.0371 4.9241 37 1 -0.9030 4.3074 5.6034 38 1 -2.5389 5.4693 3.6157 39 1 -5.1639 7.5159 3.8340 40 1 3.6160 -0.7070 0.8177 41 1 4.3043 -0.0028 2.3437 42 1 5.9687 0.9677 0.8294 43 1 4.8219 0.9064 -0.5785 44 1 4.6108 2.6538 1.9783 45 1 4.0519 3.0616 0.2983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732363061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:51 Heat of formation + Delta-G solvation = -3.382761 kcal Electronic energy + Delta-G solvation = -22148.342814 eV Core-core repulsion = 18973.673490 eV Total energy + Delta-G solvation = -3174.669324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87933 -38.20571 -36.64414 -34.66775 -34.16170 -32.44337 -30.11963 -28.73749 -26.58271 -25.98827 -25.54388 -24.46764 -22.46047 -20.89863 -20.36204 -19.93258 -18.51448 -17.58669 -16.92419 -16.11230 -15.72593 -15.50418 -14.77847 -14.66467 -14.42150 -14.13400 -13.90674 -13.65330 -13.20586 -13.04633 -12.69866 -12.49551 -12.33473 -12.14869 -12.09254 -11.95268 -11.39794 -11.32668 -11.05360 -10.89410 -10.80998 -10.68961 -10.56984 -10.43890 -10.40183 -10.07906 -9.74984 -9.63551 -9.40277 -8.95689 -8.86751 -6.91959 -5.76703 -3.04960 2.08934 2.63826 3.23808 3.44845 3.49037 3.50200 4.13430 4.25001 4.47097 4.49844 4.59810 4.77060 4.88004 4.96072 5.09019 5.17906 5.23774 5.28265 5.40083 5.42939 5.52721 5.57645 5.58490 5.63370 5.69739 5.83173 5.84130 5.88704 5.98362 6.02363 6.12605 6.13786 6.26327 6.40392 6.43916 6.53825 6.56936 6.65826 6.78201 6.87887 7.55871 7.70416 8.27104 8.42551 9.53709 10.11133 10.46075 11.46305 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.003062 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.435744 B = 9141.312080 C = 9387.101477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C -0.068 4.068 4 C -0.104 4.104 5 C 0.529 3.471 6 O -0.543 6.543 7 N -0.722 5.722 8 C 0.126 3.874 9 C -0.109 4.109 10 H 0.075 0.925 11 C -0.141 4.141 12 C 0.161 3.839 13 N -0.730 5.730 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.114 4.114 23 C -0.141 4.141 24 C -0.121 4.121 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.398 0.602 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.844 -11.324 -11.462 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C -0.105 4.105 4 C -0.107 4.107 5 C 0.315 3.685 6 O -0.420 6.420 7 N -0.374 5.374 8 C 0.003 3.997 9 C -0.129 4.129 10 H 0.094 0.906 11 C -0.198 4.198 12 C 0.032 3.968 13 N -0.375 5.375 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.152 4.152 23 C -0.178 4.178 24 C -0.159 4.159 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.895 -11.780 -10.572 23.891 hybrid contribution -1.005 0.686 0.106 1.221 sum 16.891 -11.094 -10.466 22.758 Atomic orbital electron populations 1.23916 0.95909 1.02191 0.99854 1.22819 0.95934 0.98127 1.00963 1.20545 0.97630 0.96294 0.96037 1.22127 0.94655 1.00444 0.93459 1.20274 0.79401 0.79277 0.89587 1.90672 1.66143 1.49362 1.35827 1.46069 1.36447 1.37267 1.17580 1.21401 0.92708 0.98751 0.86878 1.21542 0.96095 0.94307 1.00921 0.90640 1.21785 0.99965 0.97567 1.00511 1.20574 0.89553 0.93106 0.93522 1.42328 1.30681 1.45778 1.18718 1.19201 1.04456 1.17321 0.96064 0.91220 1.24729 0.99520 0.99465 0.97285 1.69644 1.36393 1.29539 1.22814 0.86253 0.81429 0.77593 0.80835 1.21267 1.21697 1.21274 1.22885 0.94723 0.95918 1.01665 1.22834 0.98896 0.96162 0.99902 1.22930 0.94294 0.96660 1.02011 0.88348 0.88446 0.87226 0.90845 0.89841 0.76685 0.91544 0.91462 0.91176 0.92843 0.93964 0.96177 0.96034 0.78221 0.93485 0.90898 0.88707 0.91059 0.89910 0.89550 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 14.32 29.02 0.42 -1.28 16 2 C -0.16 -1.42 8.79 -36.02 -0.32 -1.73 16 3 C -0.07 -0.53 5.01 -27.88 -0.14 -0.67 16 4 C -0.10 -0.97 0.86 -154.85 -0.13 -1.10 16 5 C 0.53 6.85 6.79 -10.98 -0.07 6.78 16 6 O -0.54 -9.18 15.89 5.56 0.09 -9.09 16 7 N -0.72 -8.69 5.10 -60.29 -0.31 -9.00 16 8 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 9 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 10 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 12 C 0.16 3.23 5.65 -4.04 -0.02 3.20 16 13 N -0.73 -18.39 5.33 -59.90 -0.32 -18.71 16 14 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.94 -28.19 13.06 55.49 0.72 -27.46 16 18 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C -0.11 -1.03 6.81 -25.92 -0.18 -1.20 16 23 C -0.14 -0.96 7.73 -25.92 -0.20 -1.16 16 24 C -0.12 -0.94 7.17 -25.92 -0.19 -1.13 16 25 H 0.10 0.93 7.83 -52.49 -0.41 0.51 16 26 H 0.10 0.85 8.06 -52.48 -0.42 0.42 16 27 H 0.11 0.90 6.83 -52.49 -0.36 0.54 16 28 H 0.07 0.56 6.45 -51.93 -0.34 0.22 16 29 H 0.08 0.52 7.37 -51.93 -0.38 0.14 16 30 H 0.40 3.98 6.42 -40.82 -0.26 3.72 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.22 7.18 -51.93 -0.37 0.84 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.51 7.18 -51.93 -0.37 0.13 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.07 0.59 6.49 -51.93 -0.34 0.26 16 41 H 0.09 1.03 7.39 -51.93 -0.38 0.64 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.46 7.69 -51.93 -0.40 0.06 16 44 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -32.28 360.44 -8.06 -40.34 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.66 Total: 8.60 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.99 Total: -7.62 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.10 Total: -55.17 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.28 -8.06 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732363061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.960 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds