Wall clock time and date at job start Fri Apr 10 2020 17:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50699 * 119.99671 * 2 1 4 4 C 1.53008 * 109.47099 * 121.55720 * 3 2 1 5 5 C 1.50699 * 112.90473 * 285.32360 * 4 3 2 6 6 O 1.21277 * 120.00362 * 135.52294 * 5 4 3 7 7 N 1.34780 * 120.00010 * 315.52476 * 5 4 3 8 8 C 1.46507 * 119.99787 * 175.27579 * 7 5 4 9 9 C 1.53004 * 109.46843 * 180.02562 * 8 7 5 10 10 H 1.09006 * 109.46827 * 55.00032 * 9 8 7 11 11 C 1.52999 * 109.47351 * 295.00389 * 9 8 7 12 12 C 1.53001 * 109.46813 * 175.00051 * 9 8 7 13 13 N 1.46502 * 109.47102 * 185.00140 * 12 9 8 14 14 C 1.36930 * 120.00079 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99897 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99838 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47525 * 60.00002 * 18 16 14 20 20 H 1.48497 * 109.47287 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47551 * 300.00114 * 18 16 14 22 22 C 1.53775 * 113.61406 * 56.57621 * 4 3 2 23 23 C 1.53779 * 87.08346 * 89.11959 * 22 4 3 24 24 C 1.53779 * 113.61392 * 154.07615 * 4 3 2 25 25 H 1.07997 * 120.00780 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99393 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00780 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47539 * 1.55366 * 3 2 1 29 29 H 1.09007 * 109.47167 * 241.55391 * 3 2 1 30 30 H 0.97000 * 120.00254 * 355.28351 * 7 5 4 31 31 H 1.08992 * 109.47162 * 299.99926 * 8 7 5 32 32 H 1.08994 * 109.46661 * 60.00218 * 8 7 5 33 33 H 1.08999 * 109.46977 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.46649 * 300.00110 * 11 9 8 35 35 H 1.08999 * 109.47255 * 59.99956 * 11 9 8 36 36 H 1.09005 * 109.47210 * 304.99938 * 12 9 8 37 37 H 1.08999 * 109.46934 * 65.00481 * 12 9 8 38 38 H 0.97005 * 120.00052 * 0.02562 * 13 12 9 39 39 H 0.97001 * 120.00138 * 179.97438 * 17 16 14 40 40 H 1.08993 * 113.61681 * 334.56360 * 22 4 3 41 41 H 1.09000 * 113.68630 * 203.67796 * 22 4 3 42 42 H 1.08999 * 113.61782 * 139.97777 * 23 22 4 43 43 H 1.08998 * 113.61203 * 270.88794 * 23 22 4 44 44 H 1.09006 * 113.61661 * 156.32993 * 24 4 3 45 45 H 1.09005 * 113.61910 * 25.43118 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0633 1.3051 0.0000 4 6 2.9722 1.3694 1.2292 5 6 2.2150 1.6328 2.5053 6 8 2.4688 0.9935 3.5041 7 7 1.2557 2.5790 2.5366 8 6 0.4491 2.7647 3.7455 9 6 -0.5591 3.8927 3.5176 10 1 -1.1517 3.6762 2.6287 11 6 0.1884 5.2134 3.3229 12 6 -1.4831 4.0038 4.7320 13 7 -2.5222 5.0016 4.4654 14 6 -3.4697 5.2741 5.4156 15 1 -3.4513 4.7532 6.3615 16 6 -4.4539 6.2200 5.1631 17 7 -4.4760 6.8552 4.0106 18 14 -5.7460 6.5922 6.4597 19 1 -5.0821 7.0858 7.6929 20 1 -6.6759 7.6309 5.9480 21 1 -6.5078 5.3556 6.7688 22 6 3.9573 0.1929 1.3291 23 6 4.9332 1.0417 0.4973 24 6 4.1985 2.2781 1.0418 25 1 -0.5401 0.9352 0.0004 26 1 -0.5399 -0.9354 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3554 2.1334 0.0279 29 1 2.6690 1.3751 -0.9036 30 1 1.0992 3.1370 1.7588 31 1 -0.0841 1.8415 3.9718 32 1 1.1004 3.0222 4.5807 33 1 -0.5300 6.0170 3.1610 34 1 0.7810 5.4298 4.2118 35 1 0.8467 5.1342 2.4577 36 1 -1.9486 3.0371 4.9241 37 1 -0.9030 4.3074 5.6034 38 1 -2.5389 5.4693 3.6157 39 1 -5.1639 7.5159 3.8340 40 1 3.6160 -0.7070 0.8177 41 1 4.3043 -0.0028 2.3437 42 1 5.9687 0.9677 0.8294 43 1 4.8219 0.9064 -0.5785 44 1 4.6108 2.6538 1.9783 45 1 4.0519 3.0616 0.2983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732363061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:50 Heat of formation + Delta-G solvation = -23.460685 kcal Electronic energy + Delta-G solvation = -22149.213458 eV Core-core repulsion = 18973.673490 eV Total energy + Delta-G solvation = -3175.539968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.73540 -39.20002 -38.01805 -36.01343 -35.13200 -34.04780 -31.94215 -29.53189 -27.77493 -27.15553 -26.59807 -25.53860 -24.16939 -21.87692 -21.44949 -20.89071 -19.54373 -18.98121 -18.23592 -17.30635 -16.68236 -16.52984 -16.35994 -15.70417 -15.50925 -15.45944 -15.17895 -14.75513 -14.63031 -14.27376 -13.89294 -13.67247 -13.56709 -13.21160 -12.97465 -12.83346 -12.78254 -12.72168 -12.22601 -12.21081 -12.04267 -12.01142 -12.00386 -11.72183 -11.66693 -11.44298 -11.08657 -10.94492 -10.61969 -10.17679 -10.07106 -9.00496 -7.96085 -5.24462 1.39627 1.47140 1.49861 1.56019 1.63358 2.21670 2.56504 3.37356 3.43565 3.57435 3.70732 3.79644 3.89583 3.94097 4.00410 4.07273 4.22275 4.30500 4.35411 4.52879 4.60478 4.65228 4.69134 4.77472 4.82786 4.90465 4.91629 4.99401 5.01500 5.03276 5.11064 5.13248 5.18415 5.24994 5.32464 5.40500 5.47348 5.48838 5.54195 5.76287 5.87876 6.26478 6.57792 7.26724 7.33405 8.08078 8.33100 9.27156 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.003062 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.435744 B = 9141.312080 C = 9387.101477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.065 4.065 4 C -0.101 4.101 5 C 0.524 3.476 6 O -0.588 6.588 7 N -0.712 5.712 8 C 0.138 3.862 9 C -0.092 4.092 10 H 0.078 0.922 11 C -0.134 4.134 12 C 0.157 3.843 13 N -0.740 5.740 14 C -0.250 4.250 15 H 0.072 0.928 16 C -0.072 4.072 17 N -0.967 5.967 18 Si 0.973 3.027 19 H -0.279 1.279 20 H -0.293 1.293 21 H -0.279 1.279 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.119 4.119 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.411 0.589 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.377 0.623 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.910 -11.445 -12.705 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.179 4.179 3 C -0.102 4.102 4 C -0.104 4.104 5 C 0.312 3.688 6 O -0.468 6.468 7 N -0.364 5.364 8 C 0.014 3.986 9 C -0.111 4.111 10 H 0.097 0.903 11 C -0.192 4.192 12 C 0.030 3.970 13 N -0.384 5.384 14 C -0.382 4.382 15 H 0.090 0.910 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.802 3.198 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.205 1.205 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.156 4.156 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.248 0.752 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.210 0.790 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.982 -11.912 -11.824 25.338 hybrid contribution -1.288 0.657 0.524 1.538 sum 17.694 -11.255 -11.299 23.821 Atomic orbital electron populations 1.23994 0.96379 1.02228 1.00939 1.23015 0.95876 0.99020 0.99963 1.20606 0.97669 0.95813 0.96144 1.22212 0.94808 1.01373 0.91984 1.21017 0.79033 0.78345 0.90397 1.90654 1.67470 1.50902 1.37788 1.45945 1.35864 1.37380 1.17210 1.21094 0.92307 0.97510 0.87711 1.21315 0.95614 0.95360 0.98840 0.90320 1.21716 0.99622 0.95928 1.01916 1.20711 0.89181 0.91508 0.95587 1.42482 1.31309 1.46629 1.17946 1.19591 1.04961 1.16980 0.96643 0.90978 1.25533 1.01781 0.99767 0.99383 1.69791 1.37152 1.30236 1.24586 0.85225 0.78794 0.77340 0.78479 1.20491 1.21908 1.20511 1.22898 0.95627 0.96571 1.00933 1.22824 0.98536 0.94315 1.00692 1.22949 0.93112 0.97461 1.02109 0.88608 0.88367 0.86704 0.90362 0.87203 0.75163 0.92609 0.92224 0.93755 0.93100 0.90581 0.96447 0.96255 0.79033 0.93893 0.90177 0.91252 0.90529 0.87693 0.90923 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.50 14.32 67.79 0.97 -2.53 16 2 C -0.16 -2.54 8.79 25.66 0.23 -2.31 16 3 C -0.07 -0.83 5.01 29.85 0.15 -0.68 16 4 C -0.10 -1.67 0.86 -52.40 -0.04 -1.72 16 5 C 0.52 13.13 6.79 87.66 0.60 13.72 16 6 O -0.59 -20.07 15.89 -3.02 -0.05 -20.12 16 7 N -0.71 -16.17 5.10 -463.05 -2.36 -18.54 16 8 C 0.14 3.85 5.07 86.38 0.44 4.29 16 9 C -0.09 -2.81 2.46 -10.79 -0.03 -2.83 16 10 H 0.08 2.38 8.14 -2.38 -0.02 2.37 16 11 C -0.13 -3.85 8.94 71.98 0.64 -3.21 16 12 C 0.16 6.33 5.65 86.38 0.49 6.82 16 13 N -0.74 -37.60 5.33 -343.44 -1.83 -39.43 16 14 C -0.25 -14.13 9.99 84.04 0.84 -13.29 16 15 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 17 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 18 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 C -0.12 -2.02 6.81 31.12 0.21 -1.81 16 23 C -0.13 -1.35 7.73 31.12 0.24 -1.11 16 24 C -0.12 -1.52 7.17 31.12 0.22 -1.30 16 25 H 0.10 1.70 7.83 -2.91 -0.02 1.68 16 26 H 0.10 1.65 8.06 -2.91 -0.02 1.63 16 27 H 0.12 1.67 6.83 -2.91 -0.02 1.65 16 28 H 0.08 0.94 6.45 -2.39 -0.02 0.93 16 29 H 0.11 0.89 7.37 -2.38 -0.02 0.87 16 30 H 0.41 7.24 6.42 -92.71 -0.60 6.64 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.52 7.18 -2.39 -0.02 1.50 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.65 7.18 -2.39 -0.02 1.63 16 36 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.38 19.96 6.85 -92.70 -0.64 19.32 16 39 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.08 1.17 6.49 -2.39 -0.02 1.16 16 41 H 0.07 1.51 7.39 -2.39 -0.02 1.50 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 0.71 7.69 -2.39 -0.02 0.69 16 44 H 0.07 1.16 8.09 -2.38 -0.02 1.14 16 45 H 0.10 0.86 8.10 -2.38 -0.02 0.84 16 Total: -1.00 -69.98 360.44 3.23 -66.75 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.26 Total: 31.16 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 5.42 Total: -9.66 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -3.91 Total: -116.49 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -69.98 3.23 -66.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732363061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.288 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds