Wall clock time and date at job start Fri Apr 10 2020 17:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47349 * 2 1 4 4 C 1.52994 * 109.47485 * 120.00418 * 2 1 3 5 5 N 1.46497 * 109.47586 * 174.99657 * 4 2 1 6 6 C 1.36939 * 120.00332 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99635 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99926 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00193 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99755 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47385 * 59.99620 * 10 8 6 12 12 H 1.48495 * 109.47282 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47026 * 299.99779 * 10 8 6 14 14 N 1.46503 * 109.47025 * 240.00307 * 2 1 3 15 15 C 1.46506 * 119.99927 * 300.00006 * 14 2 1 16 16 C 1.34778 * 120.00193 * 119.99612 * 14 2 1 17 17 O 1.21285 * 119.99578 * 0.02562 * 16 14 2 18 18 C 1.50695 * 120.00347 * 179.97438 * 16 14 2 19 19 H 1.08998 * 115.54722 * 34.33760 * 18 16 14 20 20 C 1.53069 * 117.51740 * 248.61223 * 18 16 14 21 21 C 1.53000 * 59.98584 * 252.52208 * 20 18 16 22 22 H 1.09002 * 117.49833 * 107.50105 * 21 20 18 23 23 C 1.52996 * 117.50107 * 252.50051 * 21 20 18 24 24 C 1.53776 * 113.61523 * 227.88372 * 23 21 20 25 25 C 1.53951 * 87.02158 * 220.04496 * 24 23 21 26 26 C 1.53777 * 113.61701 * 130.27404 * 23 21 20 27 27 H 1.09008 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46887 * 299.99694 * 1 2 3 29 29 H 1.09004 * 109.47183 * 59.99848 * 1 2 3 30 30 H 1.08997 * 109.47128 * 295.00295 * 4 2 1 31 31 H 1.09001 * 109.47052 * 54.99554 * 4 2 1 32 32 H 0.96996 * 119.99859 * 0.02562 * 5 4 2 33 33 H 0.97001 * 119.99777 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.46963 * 269.99563 * 15 14 2 35 35 H 1.08994 * 109.46929 * 29.99982 * 15 14 2 36 36 H 1.09005 * 109.46499 * 150.00357 * 15 14 2 37 37 H 1.09008 * 117.49334 * 145.03764 * 20 18 16 38 38 H 1.08999 * 117.51639 * 359.97438 * 20 18 16 39 39 H 1.09000 * 112.85209 * 359.07517 * 23 21 20 40 40 H 1.08999 * 113.61341 * 334.56659 * 24 23 21 41 41 H 1.09006 * 113.61690 * 105.46749 * 24 23 21 42 42 H 1.08994 * 113.54045 * 270.80904 * 25 24 23 43 43 H 1.09004 * 113.74444 * 139.94395 * 25 24 23 44 44 H 1.08999 * 113.61805 * 254.52918 * 26 23 21 45 45 H 1.09001 * 113.61617 * 25.34789 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1839 -1.4381 2.2070 7 1 3.6470 -1.8426 3.0522 8 6 5.5674 -1.5373 2.1516 9 7 6.2218 -1.0439 1.1217 10 14 6.5002 -2.3722 3.5380 11 1 6.0443 -3.7799 3.6640 12 1 7.9549 -2.3483 3.2407 13 1 6.2428 -1.6528 4.8114 14 7 2.0183 -0.6906 -1.1962 15 6 1.6643 -2.0932 -1.4281 16 6 2.7931 -0.0355 -2.0834 17 8 3.0864 1.1255 -1.8912 18 6 3.2959 -0.7460 -3.3136 19 1 2.6172 -1.4845 -3.7403 20 6 4.7972 -1.0312 -3.4016 21 6 4.1710 0.0520 -4.2822 22 1 4.3832 1.0909 -4.0296 23 6 4.0265 -0.2477 -5.7756 24 6 4.5260 0.8888 -6.6831 25 6 3.3079 0.6002 -7.5793 26 6 2.6188 0.0333 -6.3269 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.7517 -0.1585 2.1369 31 1 1.6054 -1.7198 1.2950 32 1 3.9824 -0.4623 0.4318 33 1 7.1885 -1.1136 1.0828 34 1 2.4157 -2.7377 -0.9719 35 1 0.6904 -2.3002 -0.9848 36 1 1.6238 -2.2851 -2.5004 37 1 5.1059 -1.9576 -3.8862 38 1 5.4214 -0.7046 -2.5699 39 1 4.4152 -1.2283 -6.0501 40 1 4.4970 1.8703 -6.2098 41 1 5.4818 0.6770 -7.1624 42 1 3.5007 -0.1480 -8.3481 43 1 2.8298 1.4974 -7.9725 44 1 2.0370 -0.8682 -6.5190 45 1 2.0668 0.7794 -5.7552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732445107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:02 Heat of formation + Delta-G solvation = 18.324630 kcal Electronic energy + Delta-G solvation = -22810.760749 eV Core-core repulsion = 19637.032729 eV Total energy + Delta-G solvation = -3173.728021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.05211 -38.82320 -36.55386 -35.18631 -33.91310 -31.78035 -30.02239 -26.60379 -26.40078 -25.64765 -25.56459 -24.02479 -22.45365 -21.07334 -20.19594 -19.39443 -18.44338 -17.11633 -17.00847 -15.89903 -15.56056 -15.10957 -14.86058 -14.56116 -13.92194 -13.62257 -13.31390 -13.11754 -12.71790 -12.53152 -12.48359 -12.36680 -12.23982 -12.20358 -11.93267 -11.79326 -11.57854 -11.40914 -10.81031 -10.75999 -10.72753 -10.66596 -10.53490 -10.39878 -10.03908 -9.81104 -9.66627 -9.65417 -9.24300 -8.82450 -8.13739 -6.85351 -5.69540 -2.98397 2.98487 3.35454 3.46304 3.50606 3.51840 4.05765 4.52725 4.61417 4.63595 4.68179 4.84566 4.96521 5.13590 5.17139 5.27346 5.34168 5.44341 5.48121 5.50465 5.60772 5.62815 5.64838 5.73353 5.74744 5.81253 5.83857 5.90116 5.99719 6.03552 6.15780 6.18004 6.21975 6.23445 6.32748 6.43382 6.47728 6.53560 6.55242 6.79764 7.09008 7.73080 7.86579 8.48353 8.69674 9.59697 10.19138 10.54963 11.52635 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.004708 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.223540 B = 5945.322068 C = 7078.212606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.241 4.241 7 H 0.068 0.932 8 C -0.012 4.012 9 N -0.929 5.929 10 Si 0.905 3.095 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.594 5.594 15 C 0.082 3.918 16 C 0.548 3.452 17 O -0.544 6.544 18 C -0.183 4.183 19 H 0.117 0.883 20 C -0.140 4.140 21 C -0.114 4.114 22 H 0.116 0.884 23 C -0.080 4.080 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.134 4.134 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.019 0.981 32 H 0.387 0.613 33 H 0.254 0.746 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 -0.715 -15.218 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.326 5.326 15 C -0.061 4.061 16 C 0.336 3.664 17 O -0.421 6.421 18 C -0.204 4.204 19 H 0.135 0.865 20 C -0.177 4.177 21 C -0.133 4.133 22 H 0.134 0.866 23 C -0.098 4.098 24 C -0.170 4.170 25 C -0.182 4.182 26 C -0.171 4.171 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.221 0.779 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.633 -0.188 -14.952 17.787 hybrid contribution 0.654 -0.627 0.718 1.156 sum -8.979 -0.815 -14.234 16.849 Atomic orbital electron populations 1.22061 0.95353 1.01949 1.01987 1.21369 0.93121 0.98515 0.84833 0.88324 1.20987 0.87153 0.96672 0.93591 1.42285 0.99679 1.70083 1.25116 1.19169 0.89450 1.29487 0.99105 0.91419 1.24723 0.96391 1.01687 0.98008 1.69674 1.07125 1.50763 1.30167 0.86298 0.79040 0.79216 0.81782 1.21394 1.21724 1.21354 1.47552 1.50707 1.12124 1.22240 1.21717 1.01115 0.82385 1.00875 1.19548 0.77362 0.86205 0.83252 1.90662 1.57531 1.17217 1.76732 1.22205 0.96037 1.04453 0.97662 0.86491 1.23109 0.92257 0.99779 1.02588 1.22363 1.02141 0.98225 0.90570 0.86626 1.22155 0.96905 0.98980 0.91809 1.22970 0.97737 0.99011 0.97308 1.22847 0.97727 1.00958 0.96662 1.22909 0.96263 1.01087 0.96876 0.92399 0.91456 0.92700 0.95619 0.96284 0.77914 0.93570 0.91753 0.91541 0.91772 0.88332 0.87163 0.89215 0.89863 0.91567 0.90478 0.91650 0.91825 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.17 37.16 0.34 -1.73 16 2 C 0.12 2.23 2.80 -67.93 -0.19 2.04 16 3 H 0.10 2.02 6.90 -51.93 -0.36 1.66 16 4 C 0.14 3.01 5.55 -4.05 -0.02 2.99 16 5 N -0.73 -19.20 5.43 -59.91 -0.33 -19.53 16 6 C -0.24 -6.91 9.99 -15.06 -0.15 -7.07 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 10 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 N -0.59 -10.28 2.24 -173.93 -0.39 -10.67 16 15 C 0.08 1.16 9.43 59.85 0.56 1.72 16 16 C 0.55 10.29 7.16 -10.99 -0.08 10.21 16 17 O -0.54 -12.22 15.59 5.55 0.09 -12.13 16 18 C -0.18 -2.74 4.85 -91.74 -0.44 -3.18 16 19 H 0.12 1.45 6.44 -51.93 -0.33 1.12 16 20 C -0.14 -2.15 9.93 -26.70 -0.26 -2.41 16 21 C -0.11 -1.60 5.04 -90.62 -0.46 -2.05 16 22 H 0.12 1.86 7.50 -51.93 -0.39 1.47 16 23 C -0.08 -0.87 3.86 -89.81 -0.35 -1.21 16 24 C -0.13 -1.32 7.65 -25.83 -0.20 -1.51 16 25 C -0.14 -1.27 8.09 -25.83 -0.21 -1.47 16 26 C -0.13 -1.32 7.49 -25.92 -0.19 -1.52 16 27 H 0.06 0.69 6.66 -51.92 -0.35 0.35 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 32 H 0.39 11.06 7.06 -40.82 -0.29 10.77 16 33 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.80 6.43 -51.93 -0.33 0.46 16 36 H 0.06 0.73 6.00 -51.93 -0.31 0.42 16 37 H 0.10 1.28 8.13 -51.92 -0.42 0.86 16 38 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 39 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.08 0.87 7.98 -51.93 -0.41 0.46 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -33.11 360.23 -9.04 -42.16 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.80 Total: 10.60 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.75 Total: -5.64 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.01 Total: -58.19 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.11 -9.04 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732445107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.480 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds