Wall clock time and date at job start Fri Apr 10 2020 17:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47349 * 2 1 4 4 C 1.52994 * 109.47485 * 120.00418 * 2 1 3 5 5 N 1.46497 * 109.47586 * 174.99657 * 4 2 1 6 6 C 1.36939 * 120.00332 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99635 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99926 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00193 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99755 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47385 * 59.99620 * 10 8 6 12 12 H 1.48495 * 109.47282 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47026 * 299.99779 * 10 8 6 14 14 N 1.46503 * 109.47025 * 240.00307 * 2 1 3 15 15 C 1.46506 * 119.99927 * 300.00006 * 14 2 1 16 16 C 1.34778 * 120.00193 * 119.99612 * 14 2 1 17 17 O 1.21285 * 119.99578 * 0.02562 * 16 14 2 18 18 C 1.50695 * 120.00347 * 179.97438 * 16 14 2 19 19 H 1.08998 * 115.54722 * 34.33760 * 18 16 14 20 20 C 1.53069 * 117.51740 * 248.61223 * 18 16 14 21 21 C 1.53000 * 59.98584 * 252.52208 * 20 18 16 22 22 H 1.09002 * 117.49833 * 107.50105 * 21 20 18 23 23 C 1.52996 * 117.50107 * 252.50051 * 21 20 18 24 24 C 1.53776 * 113.61523 * 227.88372 * 23 21 20 25 25 C 1.53951 * 87.02158 * 220.04496 * 24 23 21 26 26 C 1.53777 * 113.61701 * 130.27404 * 23 21 20 27 27 H 1.09008 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46887 * 299.99694 * 1 2 3 29 29 H 1.09004 * 109.47183 * 59.99848 * 1 2 3 30 30 H 1.08997 * 109.47128 * 295.00295 * 4 2 1 31 31 H 1.09001 * 109.47052 * 54.99554 * 4 2 1 32 32 H 0.96996 * 119.99859 * 0.02562 * 5 4 2 33 33 H 0.97001 * 119.99777 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.46963 * 269.99563 * 15 14 2 35 35 H 1.08994 * 109.46929 * 29.99982 * 15 14 2 36 36 H 1.09005 * 109.46499 * 150.00357 * 15 14 2 37 37 H 1.09008 * 117.49334 * 145.03764 * 20 18 16 38 38 H 1.08999 * 117.51639 * 359.97438 * 20 18 16 39 39 H 1.09000 * 112.85209 * 359.07517 * 23 21 20 40 40 H 1.08999 * 113.61341 * 334.56659 * 24 23 21 41 41 H 1.09006 * 113.61690 * 105.46749 * 24 23 21 42 42 H 1.08994 * 113.54045 * 270.80904 * 25 24 23 43 43 H 1.09004 * 113.74444 * 139.94395 * 25 24 23 44 44 H 1.08999 * 113.61805 * 254.52918 * 26 23 21 45 45 H 1.09001 * 113.61617 * 25.34789 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1839 -1.4381 2.2070 7 1 3.6470 -1.8426 3.0522 8 6 5.5674 -1.5373 2.1516 9 7 6.2218 -1.0439 1.1217 10 14 6.5002 -2.3722 3.5380 11 1 6.0443 -3.7799 3.6640 12 1 7.9549 -2.3483 3.2407 13 1 6.2428 -1.6528 4.8114 14 7 2.0183 -0.6906 -1.1962 15 6 1.6643 -2.0932 -1.4281 16 6 2.7931 -0.0355 -2.0834 17 8 3.0864 1.1255 -1.8912 18 6 3.2959 -0.7460 -3.3136 19 1 2.6172 -1.4845 -3.7403 20 6 4.7972 -1.0312 -3.4016 21 6 4.1710 0.0520 -4.2822 22 1 4.3832 1.0909 -4.0296 23 6 4.0265 -0.2477 -5.7756 24 6 4.5260 0.8888 -6.6831 25 6 3.3079 0.6002 -7.5793 26 6 2.6188 0.0333 -6.3269 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.7517 -0.1585 2.1369 31 1 1.6054 -1.7198 1.2950 32 1 3.9824 -0.4623 0.4318 33 1 7.1885 -1.1136 1.0828 34 1 2.4157 -2.7377 -0.9719 35 1 0.6904 -2.3002 -0.9848 36 1 1.6238 -2.2851 -2.5004 37 1 5.1059 -1.9576 -3.8862 38 1 5.4214 -0.7046 -2.5699 39 1 4.4152 -1.2283 -6.0501 40 1 4.4970 1.8703 -6.2098 41 1 5.4818 0.6770 -7.1624 42 1 3.5007 -0.1480 -8.3481 43 1 2.8298 1.4974 -7.9725 44 1 2.0370 -0.8682 -6.5190 45 1 2.0668 0.7794 -5.7552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732445107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:01 Heat of formation + Delta-G solvation = -1.472479 kcal Electronic energy + Delta-G solvation = -22811.619217 eV Core-core repulsion = 19637.032729 eV Total energy + Delta-G solvation = -3174.586488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.37385 -39.85033 -37.98910 -36.47210 -35.83290 -33.50007 -31.81216 -27.83270 -27.46533 -27.25627 -26.42546 -25.35960 -24.37162 -22.24710 -21.50592 -20.25477 -19.88175 -19.10129 -18.43516 -17.31744 -16.68976 -16.51267 -16.29079 -15.93965 -15.35886 -15.23907 -15.13468 -14.30266 -14.15623 -13.90291 -13.74372 -13.42947 -13.36604 -13.27906 -13.22444 -13.04591 -12.95840 -12.75820 -12.60566 -12.52702 -12.19008 -11.87053 -11.81272 -11.73059 -11.50782 -11.33967 -10.99177 -10.84681 -10.79039 -10.58618 -9.55888 -9.01217 -7.93910 -5.24416 1.44120 1.48077 1.54255 1.54904 2.03753 2.54541 2.87083 3.38293 3.47603 3.69430 3.75525 3.81420 3.95060 3.99465 4.05494 4.10852 4.15353 4.23110 4.29609 4.38469 4.46438 4.55323 4.70149 4.78154 4.81790 4.84959 4.89860 4.90959 4.92710 4.94607 5.02381 5.08094 5.14568 5.15120 5.15294 5.28383 5.30847 5.41926 5.46002 5.68363 5.70285 6.25239 6.48433 7.25249 7.31723 8.07863 8.31708 9.28854 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.004708 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.223540 B = 5945.322068 C = 7078.212606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.127 3.873 3 H 0.062 0.938 4 C 0.143 3.857 5 N -0.742 5.742 6 C -0.248 4.248 7 H 0.078 0.922 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.976 3.024 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.280 1.280 14 N -0.594 5.594 15 C 0.079 3.921 16 C 0.533 3.467 17 O -0.595 6.595 18 C -0.177 4.177 19 H 0.154 0.846 20 C -0.148 4.148 21 C -0.101 4.101 22 H 0.084 0.916 23 C -0.078 4.078 24 C -0.139 4.139 25 C -0.134 4.134 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.037 0.963 32 H 0.371 0.629 33 H 0.249 0.751 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 -2.826 -16.279 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 H 0.081 0.919 4 C 0.016 3.984 5 N -0.385 5.385 6 C -0.380 4.380 7 H 0.095 0.905 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.805 3.195 11 H -0.199 1.199 12 H -0.223 1.223 13 H -0.206 1.206 14 N -0.325 5.325 15 C -0.063 4.063 16 C 0.323 3.677 17 O -0.477 6.477 18 C -0.198 4.198 19 H 0.172 0.828 20 C -0.185 4.185 21 C -0.119 4.119 22 H 0.102 0.898 23 C -0.096 4.096 24 C -0.177 4.177 25 C -0.171 4.171 26 C -0.170 4.170 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.202 0.798 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.631 -2.335 -15.988 19.909 hybrid contribution 1.220 0.078 1.108 1.650 sum -10.411 -2.257 -14.880 18.300 Atomic orbital electron populations 1.21966 0.91107 1.03759 1.03118 1.21282 0.96199 0.96208 0.84025 0.91932 1.21192 0.84220 0.97784 0.95232 1.42510 1.01981 1.69847 1.24139 1.19620 0.90044 1.28727 0.99612 0.90455 1.25605 0.97454 1.03014 1.00612 1.69874 1.06889 1.52661 1.32397 0.85182 0.77025 0.78644 0.78695 1.19921 1.22306 1.20593 1.47715 1.49956 1.13382 1.21398 1.21932 1.01508 0.79659 1.03194 1.20302 0.76953 0.85952 0.84526 1.90629 1.59316 1.19617 1.78103 1.22281 0.96056 1.05023 0.96429 0.82814 1.23020 0.91955 1.01649 1.01908 1.22342 1.00729 0.96158 0.92719 0.89822 1.22247 0.98250 1.00146 0.88940 1.23004 0.99049 0.98047 0.97589 1.22828 0.96311 1.01564 0.96407 1.22883 0.95561 1.01502 0.97016 0.90128 0.90166 0.91818 0.95451 0.94543 0.79775 0.94211 0.94298 0.88784 0.88504 0.85279 0.92127 0.87320 0.91344 0.90656 0.88648 0.91209 0.90033 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.17 71.98 0.66 -2.78 16 2 C 0.13 4.53 2.80 44.99 0.13 4.66 16 3 H 0.06 2.70 6.90 -2.39 -0.02 2.68 16 4 C 0.14 5.93 5.55 86.38 0.48 6.41 16 5 N -0.74 -40.17 5.43 -343.47 -1.87 -42.03 16 6 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 7 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 9 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 10 Si 0.98 47.40 29.55 68.60 2.03 49.42 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 N -0.59 -20.43 2.24 -822.59 -1.85 -22.27 16 15 C 0.08 2.04 9.43 127.77 1.20 3.25 16 16 C 0.53 20.67 7.16 87.66 0.63 21.30 16 17 O -0.60 -28.64 15.59 -3.05 -0.05 -28.69 16 18 C -0.18 -5.28 4.85 -11.52 -0.06 -5.34 16 19 H 0.15 3.36 6.44 -2.39 -0.02 3.34 16 20 C -0.15 -4.68 9.93 30.62 0.30 -4.37 16 21 C -0.10 -2.87 5.04 -10.79 -0.05 -2.93 16 22 H 0.08 2.93 7.50 -2.39 -0.02 2.92 16 23 C -0.08 -1.55 3.86 -10.27 -0.04 -1.59 16 24 C -0.14 -2.61 7.65 31.18 0.24 -2.38 16 25 C -0.13 -2.01 8.09 31.18 0.25 -1.75 16 26 C -0.13 -2.30 7.49 31.12 0.23 -2.06 16 27 H 0.08 1.61 6.66 -2.38 -0.02 1.60 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 32 H 0.37 22.23 7.06 -92.71 -0.65 21.58 16 33 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.91 6.43 -2.39 -0.02 1.90 16 36 H 0.10 1.86 6.00 -2.38 -0.01 1.84 16 37 H 0.13 3.22 8.13 -2.38 -0.02 3.20 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.11 1.82 8.07 -2.39 -0.02 1.80 16 40 H 0.07 1.47 7.98 -2.39 -0.02 1.45 16 41 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -76.19 360.23 4.14 -72.05 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.31 Total: 38.38 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.28 Total: -5.11 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -3.43 Total: -126.05 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.69 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -76.19 4.14 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732445107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.578 kcal (2) G-P(sol) polarization free energy of solvation -76.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds