Wall clock time and date at job start Fri Apr 10 2020 17:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46502 * 109.47303 * 2 1 4 4 C 1.46501 * 119.99693 * 270.00188 * 3 2 1 5 5 C 1.53007 * 109.46807 * 269.99709 * 4 3 2 6 6 N 1.46501 * 109.46807 * 179.97438 * 5 4 3 7 7 C 1.36944 * 119.99555 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99856 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99826 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99956 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47380 * 60.00146 * 11 9 7 13 13 H 1.48507 * 109.47015 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47237 * 299.99737 * 11 9 7 15 15 C 1.34776 * 120.00251 * 89.99405 * 3 2 1 16 16 O 1.21283 * 119.99889 * 180.02562 * 15 3 2 17 17 C 1.50696 * 120.00003 * 0.02562 * 15 3 2 18 18 C 1.52995 * 109.47277 * 179.97438 * 17 15 3 19 19 H 1.09002 * 115.56109 * 29.30325 * 18 17 15 20 20 C 1.53005 * 117.50046 * 243.62288 * 18 17 15 21 21 C 1.52999 * 59.99936 * 252.50641 * 20 18 17 22 22 H 1.09002 * 117.50317 * 107.50538 * 21 20 18 23 23 C 1.52996 * 117.49961 * 252.50864 * 21 20 18 24 24 C 1.53000 * 117.49997 * 248.61006 * 23 21 20 25 25 C 1.53002 * 60.02940 * 252.49592 * 24 23 21 26 26 H 1.08990 * 109.46917 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47167 * 300.00407 * 1 2 3 28 28 H 1.09001 * 109.46893 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.47167 * 239.99593 * 2 1 3 30 30 H 1.09001 * 109.46893 * 119.99602 * 2 1 3 31 31 H 1.08997 * 109.47360 * 29.99732 * 4 3 2 32 32 H 1.09003 * 109.47250 * 149.99981 * 4 3 2 33 33 H 1.08997 * 109.47179 * 300.00134 * 5 4 3 34 34 H 1.09003 * 109.46994 * 60.00115 * 5 4 3 35 35 H 0.96992 * 120.00384 * 0.02562 * 6 5 4 36 36 H 0.97002 * 119.99890 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.47635 * 59.99442 * 17 15 3 38 38 H 1.09003 * 109.46924 * 299.99518 * 17 15 3 39 39 H 1.08997 * 117.49904 * 145.01882 * 20 18 17 40 40 H 1.09006 * 117.51296 * 359.97438 * 20 18 17 41 41 H 1.09007 * 115.55004 * 34.27678 * 23 21 20 42 42 H 1.09002 * 117.49833 * 359.97438 * 24 23 21 43 43 H 1.09002 * 117.49953 * 144.99738 * 24 23 21 44 44 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 45 45 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7077 1.8313 -1.7104 6 7 3.9516 2.5213 -2.9795 7 6 5.1837 2.4482 -3.5728 8 1 5.9755 1.8822 -3.1048 9 6 5.4151 3.1024 -4.7749 10 7 4.4501 3.7927 -5.3449 11 14 7.0959 3.0033 -5.5838 12 1 7.4201 1.5846 -5.8793 13 1 7.0835 3.7824 -6.8480 14 1 8.1203 3.5646 -4.6670 15 6 2.2430 2.0166 1.1672 16 8 2.6469 3.1602 1.1671 17 6 1.9923 1.3062 2.4723 18 6 2.3241 2.2434 3.6351 19 1 2.1894 3.3065 3.4355 20 6 3.4710 1.8387 4.5635 21 6 2.0235 1.7468 5.0507 22 1 1.5894 0.7523 5.1539 23 6 1.5568 2.7803 6.0778 24 6 1.2560 2.2836 7.4933 25 6 0.1088 2.6886 6.5654 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1385 33 1 4.3884 2.2154 -0.9508 34 1 3.8746 0.7620 -1.8407 35 1 3.2405 3.0300 -3.3995 36 1 4.6119 4.2502 -6.1848 37 1 2.6227 0.4188 2.5300 38 1 0.9443 1.0117 2.5301 39 1 4.0907 2.6356 4.9747 40 1 3.9890 0.9046 4.3463 41 1 1.9916 3.7746 5.9751 42 1 1.3901 1.2204 7.6927 43 1 1.4927 2.9511 8.3219 44 1 -0.5115 1.8920 6.1546 45 1 -0.4089 3.6227 6.7834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732786890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:15 Heat of formation + Delta-G solvation = 16.446402 kcal Electronic energy + Delta-G solvation = -21603.686717 eV Core-core repulsion = 18429.877250 eV Total energy + Delta-G solvation = -3173.809467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.02139 -38.60375 -36.26129 -35.61090 -34.55611 -31.84538 -30.27417 -29.82161 -27.17782 -23.96909 -23.71464 -23.38673 -22.63201 -21.76565 -20.77863 -20.30370 -18.76203 -17.20438 -16.98900 -16.22536 -15.77634 -15.38339 -15.12580 -14.53025 -14.01111 -13.90513 -13.80412 -13.58435 -13.35100 -13.08261 -12.90958 -12.73488 -12.22161 -11.97489 -11.90085 -11.72921 -11.42392 -11.34253 -11.22254 -11.14956 -10.93749 -10.86758 -10.84279 -10.61659 -10.11657 -9.97275 -9.76514 -9.67374 -9.43245 -8.83320 -8.46539 -6.89496 -5.72682 -3.01745 2.81745 3.06220 3.30431 3.47277 3.51194 3.52780 3.94578 4.17435 4.50514 4.57707 4.64344 4.68439 4.79909 4.83914 4.99494 5.03717 5.07912 5.11271 5.28117 5.29218 5.35352 5.40296 5.52845 5.56982 5.59253 5.64435 5.68346 5.69577 5.74252 5.82781 5.87731 5.89904 6.04508 6.07109 6.09948 6.19420 6.24834 6.62888 6.79668 6.97352 7.58911 7.73009 8.38524 8.46262 9.56648 10.13383 10.48521 11.50256 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002928 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.663276 B = 9559.862294 C =10188.839053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.609 5.609 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.513 3.487 16 O -0.531 6.531 17 C -0.108 4.108 18 C -0.129 4.129 19 H 0.119 0.881 20 C -0.168 4.168 21 C -0.122 4.122 22 H 0.103 0.897 23 C -0.121 4.121 24 C -0.179 4.179 25 C -0.178 4.178 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -9.069 22.641 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.343 5.343 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.300 3.700 16 O -0.407 6.407 17 C -0.148 4.148 18 C -0.147 4.147 19 H 0.137 0.863 20 C -0.205 4.205 21 C -0.140 4.140 22 H 0.121 0.879 23 C -0.139 4.139 24 C -0.216 4.216 25 C -0.215 4.215 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.412 -8.490 22.591 26.283 hybrid contribution 0.684 0.007 -0.705 0.982 sum -9.728 -8.483 21.886 25.408 Atomic orbital electron populations 1.22222 0.95992 1.02129 1.02637 1.21576 0.94277 0.82765 1.03437 1.47963 1.65822 1.14184 1.06333 1.21672 0.98002 0.98388 0.83374 1.20902 0.92872 0.95397 0.89331 1.42209 1.12880 1.60821 1.21602 1.19165 0.89316 1.26093 1.02306 0.91284 1.24749 0.97856 1.00367 0.98075 1.69655 1.31628 1.37384 1.19619 0.86233 0.83769 0.77346 0.78639 1.21277 1.21648 1.21244 1.20514 0.77405 0.86822 0.85222 1.90720 1.44866 1.17983 1.87146 1.21267 1.03332 0.98662 0.91553 1.22150 1.02965 1.00836 0.88765 0.86289 1.23112 0.90866 1.03173 1.03383 1.21846 0.99099 0.98665 0.94437 0.87927 1.21743 0.98546 0.99222 0.94396 1.22937 1.03506 1.01828 0.93329 1.22945 0.91285 1.03251 1.04058 0.91565 0.92588 0.91980 0.89833 0.90587 0.90666 0.89812 0.95978 0.96554 0.78284 0.93454 0.88982 0.88750 0.88641 0.88736 0.87735 0.88833 0.88905 0.88777 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.10 1.03 5.93 -4.04 -0.02 1.01 16 3 N -0.61 -8.68 2.47 -173.68 -0.43 -9.11 16 4 C 0.11 1.91 5.52 -4.04 -0.02 1.89 16 5 C 0.14 3.12 6.58 -4.04 -0.03 3.10 16 6 N -0.73 -19.53 5.60 -59.90 -0.34 -19.86 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 11 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 15 C 0.51 7.71 7.67 -10.99 -0.08 7.63 16 16 O -0.53 -10.43 15.14 5.56 0.08 -10.35 16 17 C -0.11 -1.12 4.53 -27.89 -0.13 -1.25 16 18 C -0.13 -1.41 5.13 -90.62 -0.47 -1.87 16 19 H 0.12 1.59 7.30 -51.93 -0.38 1.21 16 20 C -0.17 -1.63 9.90 -26.73 -0.26 -1.90 16 21 C -0.12 -1.07 5.57 -90.62 -0.50 -1.57 16 22 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.12 -1.02 5.85 -90.59 -0.53 -1.55 16 24 C -0.18 -1.27 10.25 -26.73 -0.27 -1.54 16 25 C -0.18 -1.32 10.26 -26.69 -0.27 -1.59 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.46 7.22 -51.93 -0.38 0.08 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.08 0.60 6.44 -51.93 -0.33 0.26 16 31 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 10.63 7.67 -40.82 -0.31 10.31 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.09 0.80 7.13 -51.93 -0.37 0.43 16 38 H 0.09 0.79 7.19 -51.93 -0.37 0.42 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -33.96 370.33 -9.84 -43.81 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.98 Total: 6.55 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.46 Total: -6.35 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.04 Total: -57.25 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.96 -9.84 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732786890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.252 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds