Wall clock time and date at job start Fri Apr 10 2020 17:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46502 * 109.47303 * 2 1 4 4 C 1.46501 * 119.99693 * 270.00188 * 3 2 1 5 5 C 1.53007 * 109.46807 * 269.99709 * 4 3 2 6 6 N 1.46501 * 109.46807 * 179.97438 * 5 4 3 7 7 C 1.36944 * 119.99555 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99856 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99826 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99956 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47380 * 60.00146 * 11 9 7 13 13 H 1.48507 * 109.47015 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47237 * 299.99737 * 11 9 7 15 15 C 1.34776 * 120.00251 * 89.99405 * 3 2 1 16 16 O 1.21283 * 119.99889 * 180.02562 * 15 3 2 17 17 C 1.50696 * 120.00003 * 0.02562 * 15 3 2 18 18 C 1.52995 * 109.47277 * 179.97438 * 17 15 3 19 19 H 1.09002 * 115.56109 * 29.30325 * 18 17 15 20 20 C 1.53005 * 117.50046 * 243.62288 * 18 17 15 21 21 C 1.52999 * 59.99936 * 252.50641 * 20 18 17 22 22 H 1.09002 * 117.50317 * 107.50538 * 21 20 18 23 23 C 1.52996 * 117.49961 * 252.50864 * 21 20 18 24 24 C 1.53000 * 117.49997 * 248.61006 * 23 21 20 25 25 C 1.53002 * 60.02940 * 252.49592 * 24 23 21 26 26 H 1.08990 * 109.46917 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47167 * 300.00407 * 1 2 3 28 28 H 1.09001 * 109.46893 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.47167 * 239.99593 * 2 1 3 30 30 H 1.09001 * 109.46893 * 119.99602 * 2 1 3 31 31 H 1.08997 * 109.47360 * 29.99732 * 4 3 2 32 32 H 1.09003 * 109.47250 * 149.99981 * 4 3 2 33 33 H 1.08997 * 109.47179 * 300.00134 * 5 4 3 34 34 H 1.09003 * 109.46994 * 60.00115 * 5 4 3 35 35 H 0.96992 * 120.00384 * 0.02562 * 6 5 4 36 36 H 0.97002 * 119.99890 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.47635 * 59.99442 * 17 15 3 38 38 H 1.09003 * 109.46924 * 299.99518 * 17 15 3 39 39 H 1.08997 * 117.49904 * 145.01882 * 20 18 17 40 40 H 1.09006 * 117.51296 * 359.97438 * 20 18 17 41 41 H 1.09007 * 115.55004 * 34.27678 * 23 21 20 42 42 H 1.09002 * 117.49833 * 359.97438 * 24 23 21 43 43 H 1.09002 * 117.49953 * 144.99738 * 24 23 21 44 44 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 45 45 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7077 1.8313 -1.7104 6 7 3.9516 2.5213 -2.9795 7 6 5.1837 2.4482 -3.5728 8 1 5.9755 1.8822 -3.1048 9 6 5.4151 3.1024 -4.7749 10 7 4.4501 3.7927 -5.3449 11 14 7.0959 3.0033 -5.5838 12 1 7.4201 1.5846 -5.8793 13 1 7.0835 3.7824 -6.8480 14 1 8.1203 3.5646 -4.6670 15 6 2.2430 2.0166 1.1672 16 8 2.6469 3.1602 1.1671 17 6 1.9923 1.3062 2.4723 18 6 2.3241 2.2434 3.6351 19 1 2.1894 3.3065 3.4355 20 6 3.4710 1.8387 4.5635 21 6 2.0235 1.7468 5.0507 22 1 1.5894 0.7523 5.1539 23 6 1.5568 2.7803 6.0778 24 6 1.2560 2.2836 7.4933 25 6 0.1088 2.6886 6.5654 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1385 33 1 4.3884 2.2154 -0.9508 34 1 3.8746 0.7620 -1.8407 35 1 3.2405 3.0300 -3.3995 36 1 4.6119 4.2502 -6.1848 37 1 2.6227 0.4188 2.5300 38 1 0.9443 1.0117 2.5301 39 1 4.0907 2.6356 4.9747 40 1 3.9890 0.9046 4.3463 41 1 1.9916 3.7746 5.9751 42 1 1.3901 1.2204 7.6927 43 1 1.4927 2.9511 8.3219 44 1 -0.5115 1.8920 6.1546 45 1 -0.4089 3.6227 6.7834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732786890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:13 Heat of formation + Delta-G solvation = -3.504886 kcal Electronic energy + Delta-G solvation = -21604.551870 eV Core-core repulsion = 18429.877250 eV Total energy + Delta-G solvation = -3174.674620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15112 -39.36791 -37.54636 -36.40804 -36.34760 -33.67895 -31.60547 -30.85414 -28.73277 -25.70176 -24.56813 -24.26372 -23.49280 -23.13585 -21.79368 -21.00319 -19.94264 -19.15797 -18.09773 -17.46692 -16.73003 -16.46222 -16.35612 -15.96030 -15.35340 -15.28911 -15.05477 -14.79645 -14.58694 -14.38790 -14.06504 -13.70125 -13.16156 -13.09888 -12.91761 -12.76861 -12.68220 -12.56324 -12.37461 -12.26307 -12.18739 -12.08869 -12.08249 -11.90911 -11.85715 -11.48468 -10.99441 -10.85884 -10.67115 -10.22980 -9.70900 -9.09120 -7.99557 -5.30813 1.44398 1.49061 1.55076 1.66453 1.95753 2.53897 2.60569 3.28017 3.33229 3.44047 3.63582 3.88945 3.97095 4.00926 4.08361 4.15140 4.19959 4.21378 4.31678 4.36739 4.39757 4.45012 4.53509 4.54008 4.59787 4.70746 4.80354 4.83281 4.90535 4.94568 5.02132 5.06387 5.06754 5.10055 5.23667 5.30297 5.32036 5.40761 5.41413 5.44705 5.59441 6.21697 6.46977 7.22816 7.27570 7.99202 8.24813 9.23684 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002928 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.663276 B = 9559.862294 C =10188.839053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.123 3.877 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.253 4.253 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.980 3.020 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.504 3.496 16 O -0.590 6.590 17 C -0.094 4.094 18 C -0.150 4.150 19 H 0.083 0.917 20 C -0.175 4.175 21 C -0.096 4.096 22 H 0.126 0.874 23 C -0.144 4.144 24 C -0.168 4.168 25 C -0.177 4.177 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.055 0.945 33 H -0.002 1.002 34 H 0.031 0.969 35 H 0.375 0.625 36 H 0.254 0.746 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -11.887 24.075 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.339 5.339 4 C -0.001 4.001 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.091 0.909 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.808 3.192 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.294 3.706 16 O -0.470 6.470 17 C -0.133 4.133 18 C -0.169 4.169 19 H 0.102 0.898 20 C -0.212 4.212 21 C -0.114 4.114 22 H 0.144 0.856 23 C -0.162 4.162 24 C -0.205 4.205 25 C -0.214 4.214 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.016 0.984 34 H 0.048 0.952 35 H 0.207 0.793 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.848 -11.370 24.063 28.740 hybrid contribution 0.792 0.898 -1.089 1.618 sum -10.055 -10.473 22.975 27.178 Atomic orbital electron populations 1.22183 0.94455 1.03681 1.02113 1.21938 0.95516 0.80146 1.05005 1.48089 1.65366 1.15746 1.04748 1.21261 0.95705 0.97453 0.85689 1.20939 0.94920 0.95147 0.86691 1.42405 1.12087 1.61202 1.23000 1.19561 0.90319 1.25917 1.02652 0.90908 1.25660 1.01882 1.00294 0.98821 1.69819 1.33744 1.38363 1.19918 0.85128 0.78976 0.77855 0.77281 1.19782 1.21686 1.20665 1.21477 0.76020 0.86349 0.86767 1.90698 1.47498 1.20753 1.88013 1.21287 1.05567 0.98464 0.87946 1.22031 1.05065 0.99334 0.90444 0.89847 1.23196 0.91425 1.03422 1.03125 1.21886 0.97884 0.99323 0.92305 0.85606 1.21769 0.99850 0.98847 0.95768 1.23014 1.02483 1.02566 0.92468 1.23031 0.90835 1.03714 1.03777 0.88899 0.92008 0.93681 0.89950 0.87370 0.89102 0.92681 0.98443 0.95160 0.79317 0.93739 0.86285 0.85867 0.89718 0.87290 0.89301 0.87678 0.88405 0.87809 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 71.98 0.74 -1.56 16 2 C 0.10 1.64 5.93 86.38 0.51 2.16 16 3 N -0.61 -16.83 2.47 -821.79 -2.03 -18.86 16 4 C 0.12 4.45 5.52 86.38 0.48 4.92 16 5 C 0.15 6.69 6.58 86.38 0.57 7.25 16 6 N -0.74 -40.73 5.60 -343.44 -1.92 -42.66 16 7 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 11 Si 0.98 47.49 29.55 68.60 2.03 49.51 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 C 0.50 15.08 7.67 87.66 0.67 15.76 16 16 O -0.59 -24.41 15.14 -3.04 -0.05 -24.46 16 17 C -0.09 -1.73 4.53 29.85 0.14 -1.59 16 18 C -0.15 -3.20 5.13 -10.79 -0.06 -3.26 16 19 H 0.08 2.40 7.30 -2.39 -0.02 2.38 16 20 C -0.17 -3.21 9.90 30.60 0.30 -2.91 16 21 C -0.10 -1.48 5.57 -10.79 -0.06 -1.54 16 22 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 23 C -0.14 -2.29 5.85 -10.77 -0.06 -2.35 16 24 C -0.17 -2.03 10.25 30.60 0.31 -1.72 16 25 C -0.18 -2.29 10.26 30.62 0.31 -1.97 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.80 7.22 -2.39 -0.02 0.78 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 30 H 0.11 1.21 6.44 -2.39 -0.02 1.19 16 31 H 0.09 2.98 8.07 -2.39 -0.02 2.96 16 32 H 0.05 2.31 7.42 -2.39 -0.02 2.29 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.37 21.50 7.67 -92.71 -0.71 20.79 16 36 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.12 1.59 7.13 -2.39 -0.02 1.58 16 38 H 0.12 1.58 7.19 -2.39 -0.02 1.56 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 1.67 8.03 -2.38 -0.02 1.65 16 41 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -76.37 370.33 3.71 -72.66 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.24 Total: 29.53 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.16 Total: -4.90 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -3.67 Total: -122.35 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -76.37 3.71 -72.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732786890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.151 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds