Wall clock time and date at job start Fri Apr 10 2020 17:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46788 * 2 1 4 4 C 1.53001 * 109.47110 * 239.99744 * 2 1 3 5 5 C 1.50704 * 109.46828 * 64.99803 * 4 2 1 6 6 H 1.07998 * 120.00256 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99728 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99792 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00174 * 359.97438 * 7 5 4 10 10 H 1.48512 * 109.46531 * 90.00095 * 9 7 5 11 11 H 1.48494 * 109.47299 * 210.00017 * 9 7 5 12 12 H 1.48502 * 109.47228 * 330.00830 * 9 7 5 13 13 C 1.52996 * 109.47214 * 119.99890 * 2 1 3 14 14 N 1.46903 * 109.47359 * 295.00122 * 13 2 1 15 15 C 1.46901 * 111.00409 * 179.97438 * 14 13 2 16 16 C 1.53121 * 109.52145 * 204.99909 * 15 14 13 17 17 C 1.53034 * 109.27394 * 182.44147 * 16 15 14 18 18 N 1.46847 * 109.52833 * 59.17866 * 17 16 15 19 19 C 1.46897 * 111.00315 * 174.15863 * 18 17 16 20 20 C 1.53781 * 113.61485 * 174.99943 * 19 18 17 21 21 C 1.53781 * 87.08070 * 139.98212 * 20 19 18 22 22 C 1.53786 * 87.17350 * 334.52830 * 21 20 19 23 23 C 1.46847 * 111.19673 * 298.25986 * 18 17 16 24 24 C 1.53034 * 109.52521 * 61.73774 * 23 18 17 25 25 H 1.09005 * 109.46993 * 299.99968 * 1 2 3 26 26 H 1.08998 * 109.47256 * 60.00354 * 1 2 3 27 27 H 1.09003 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46900 * 184.99694 * 4 2 1 29 29 H 1.09003 * 109.47231 * 305.00386 * 4 2 1 30 30 H 0.97002 * 119.99934 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47334 * 174.99956 * 13 2 1 32 32 H 1.09003 * 109.47209 * 54.99878 * 13 2 1 33 33 H 1.00901 * 110.99981 * 303.95651 * 14 13 2 34 34 H 1.09004 * 109.51790 * 325.12717 * 15 14 13 35 35 H 1.08994 * 109.50140 * 62.49906 * 16 15 14 36 36 H 1.08998 * 109.50073 * 302.38093 * 16 15 14 37 37 H 1.09008 * 109.46522 * 299.16192 * 17 16 15 38 38 H 1.09004 * 109.46254 * 179.19669 * 17 16 15 39 39 H 1.09003 * 112.90438 * 43.75025 * 19 18 17 40 40 H 1.08999 * 113.61181 * 25.43268 * 20 19 18 41 41 H 1.08998 * 113.61680 * 254.52820 * 20 19 18 42 42 H 1.09002 * 113.61445 * 89.11830 * 21 20 19 43 43 H 1.09002 * 113.61408 * 219.93560 * 21 20 19 44 44 H 1.08992 * 113.61675 * 140.02412 * 22 21 20 45 45 H 1.09000 * 113.60973 * 270.92699 * 22 21 20 46 46 H 1.08997 * 109.46051 * 181.75677 * 23 18 17 47 47 H 1.09001 * 109.46248 * 301.72435 * 23 18 17 48 48 H 1.08996 * 109.50731 * 180.87807 * 24 23 18 49 49 H 1.09008 * 109.50432 * 60.76052 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 1.6447 0.2771 -4.7994 9 14 2.9627 -1.9890 -3.9028 10 1 2.0233 -3.1334 -4.0188 11 1 3.8107 -1.9193 -5.1198 12 1 3.8251 -2.1757 -2.7084 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.1248 -0.6271 3.6673 16 6 1.2359 -0.2230 4.8468 17 6 1.7702 -0.8696 6.1267 18 7 3.1520 -0.4302 6.3588 19 6 3.6506 -0.9207 7.6506 20 6 5.1332 -0.5983 7.9014 21 6 4.7402 -0.2971 9.3573 22 6 3.3288 0.0144 8.8318 23 6 4.0336 -0.8482 5.2614 24 6 3.5669 -0.2009 3.9556 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7995 -1.2055 29 1 1.6053 -1.7199 -1.2951 30 1 1.8913 -0.0463 -5.6800 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 1.9881 0.9874 2.3967 34 1 2.0832 -1.7080 3.5333 35 1 0.2158 -0.5616 4.6664 36 1 1.2462 0.8616 4.9553 37 1 1.7468 -1.9545 6.0227 38 1 1.1479 -0.5724 6.9709 39 1 3.3930 -1.9634 7.8365 40 1 5.4883 0.2756 7.3553 41 1 5.7914 -1.4607 7.7964 42 1 4.7805 -1.1693 10.0098 43 1 5.2509 0.5695 9.7771 44 1 2.5315 -0.3537 9.4773 45 1 3.1917 1.0555 8.5396 46 1 5.0552 -0.5354 5.4770 47 1 3.9996 -1.9331 5.1613 48 1 4.2120 -0.5237 3.1384 49 1 3.6138 0.8841 4.0501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602519975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:06 Heat of formation + Delta-G solvation = 0.984157 kcal Electronic energy + Delta-G solvation = -22313.577413 eV Core-core repulsion = 19274.930548 eV Total energy + Delta-G solvation = -3038.646866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06824 -38.15450 -36.25084 -34.00873 -32.14783 -31.04763 -30.11552 -27.35414 -26.04813 -25.66942 -24.35753 -22.99569 -22.54219 -21.67008 -20.14581 -19.61747 -18.91845 -16.92966 -16.70049 -15.78870 -15.24070 -15.02073 -14.88777 -14.51164 -14.08030 -13.95221 -13.63946 -13.56100 -13.07444 -12.75157 -12.59647 -12.49679 -12.36590 -11.93794 -11.88757 -11.62580 -11.51362 -11.29908 -11.09502 -10.99115 -10.91814 -10.71207 -10.67904 -10.50248 -10.41490 -10.34637 -9.76207 -9.71448 -9.34395 -9.02577 -8.54827 -8.49536 -8.08425 -5.99808 -3.96433 3.32621 3.39873 3.43461 3.64688 4.21210 4.30918 4.37252 4.48605 4.51820 4.59050 4.71445 4.83610 5.00525 5.11718 5.20937 5.25643 5.33742 5.35100 5.43271 5.49376 5.51778 5.54626 5.56220 5.61936 5.65707 5.69164 5.75339 5.85463 5.89745 5.98667 6.04923 6.07758 6.16086 6.24953 6.35214 6.48372 6.63031 6.88175 6.88800 6.94186 7.07843 7.18656 7.31402 7.36040 7.50144 7.66831 7.85536 8.60175 9.06290 9.63218 11.13674 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.036193 B = 0.002757 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.436998 B =10151.870986 C =10602.887658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.681 5.681 15 C 0.087 3.913 16 C -0.102 4.102 17 C 0.057 3.943 18 N -0.526 5.526 19 C 0.052 3.948 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.125 4.125 23 C 0.061 3.939 24 C -0.146 4.146 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.030 0.970 48 H 0.065 0.935 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 -2.779 28.069 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.310 5.310 15 C -0.024 4.024 16 C -0.140 4.140 17 C -0.071 4.071 18 N -0.251 5.251 19 C -0.056 4.056 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.163 4.163 23 C -0.068 4.068 24 C -0.186 4.186 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.048 0.952 48 H 0.084 0.916 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.098 -2.558 27.890 28.305 hybrid contribution 1.531 -1.653 -0.410 2.290 sum 5.629 -4.211 27.479 28.364 Atomic orbital electron populations 1.21598 0.95307 1.00568 1.00684 1.21003 0.96325 0.99008 0.92918 0.92238 1.19614 0.95655 0.95875 0.93572 1.21141 1.35162 1.09542 0.89086 0.90814 1.25036 0.95709 0.96938 0.95982 1.69918 1.47303 1.39293 0.97975 0.86802 0.80642 0.84410 0.77542 1.20392 1.21515 1.19171 1.22187 0.97025 0.97608 0.89830 1.60592 1.63576 1.05752 1.01119 1.21604 0.91696 0.98478 0.90602 1.21541 0.98955 1.01481 0.92062 1.22091 0.89331 0.97167 0.98527 1.62184 1.02159 1.59475 1.01272 1.23225 0.95930 0.96817 0.89660 1.23025 0.95394 1.01971 0.96745 1.22730 0.97419 1.01679 0.96293 1.23000 0.96546 1.00729 0.95991 1.21988 0.96785 0.97238 0.90768 1.22347 0.98139 1.01706 0.96385 0.93654 0.92294 0.94311 0.97014 0.97122 0.92863 0.95912 0.91791 0.84239 0.91242 0.90917 0.91100 0.95201 0.90797 0.91858 0.89226 0.91787 0.90414 0.91164 0.91890 0.89164 0.90751 0.95221 0.91592 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.46 2.48 -90.62 -0.22 -1.68 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.58 8.96 -34.44 -0.31 -14.89 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 9 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.02 4.88 -3.82 -0.02 1.00 16 14 N -0.68 -9.44 5.71 -106.59 -0.61 -10.05 16 15 C 0.09 1.02 2.53 -67.59 -0.17 0.85 16 16 C -0.10 -1.08 5.70 -26.65 -0.15 -1.23 16 17 C 0.06 0.54 5.44 -3.84 -0.02 0.52 16 18 N -0.53 -4.97 4.64 -225.55 -1.05 -6.01 16 19 C 0.05 0.42 3.30 -66.76 -0.22 0.20 16 20 C -0.13 -0.96 6.44 -25.92 -0.17 -1.13 16 21 C -0.14 -0.90 8.07 -25.92 -0.21 -1.11 16 22 C -0.12 -0.90 7.90 -25.77 -0.20 -1.10 16 23 C 0.06 0.59 5.23 -3.84 -0.02 0.57 16 24 C -0.15 -1.59 5.35 -26.65 -0.14 -1.73 16 25 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 26 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 32 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 33 H 0.34 4.59 8.45 -39.29 -0.33 4.25 16 34 H 0.07 0.88 7.80 -51.93 -0.41 0.47 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 39 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.09 0.70 7.61 -51.93 -0.39 0.30 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.68 6.53 -51.93 -0.34 0.34 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 49 H 0.07 0.81 8.10 -51.92 -0.42 0.39 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -29.65 369.15 -11.38 -41.03 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -9.66 Total: -0.13 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.72 Total: -20.35 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.88 Total: -43.48 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.65 -11.38 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.014 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds