Wall clock time and date at job start Fri Apr 10 2020 17:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46788 * 2 1 4 4 C 1.53001 * 109.47110 * 239.99744 * 2 1 3 5 5 C 1.50704 * 109.46828 * 64.99803 * 4 2 1 6 6 H 1.07998 * 120.00256 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99728 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99792 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00174 * 359.97438 * 7 5 4 10 10 H 1.48512 * 109.46531 * 90.00095 * 9 7 5 11 11 H 1.48494 * 109.47299 * 210.00017 * 9 7 5 12 12 H 1.48502 * 109.47228 * 330.00830 * 9 7 5 13 13 C 1.52996 * 109.47214 * 119.99890 * 2 1 3 14 14 N 1.46903 * 109.47359 * 295.00122 * 13 2 1 15 15 C 1.46901 * 111.00409 * 179.97438 * 14 13 2 16 16 C 1.53121 * 109.52145 * 204.99909 * 15 14 13 17 17 C 1.53034 * 109.27394 * 182.44147 * 16 15 14 18 18 N 1.46847 * 109.52833 * 59.17866 * 17 16 15 19 19 C 1.46897 * 111.00315 * 174.15863 * 18 17 16 20 20 C 1.53781 * 113.61485 * 174.99943 * 19 18 17 21 21 C 1.53781 * 87.08070 * 139.98212 * 20 19 18 22 22 C 1.53786 * 87.17350 * 334.52830 * 21 20 19 23 23 C 1.46847 * 111.19673 * 298.25986 * 18 17 16 24 24 C 1.53034 * 109.52521 * 61.73774 * 23 18 17 25 25 H 1.09005 * 109.46993 * 299.99968 * 1 2 3 26 26 H 1.08998 * 109.47256 * 60.00354 * 1 2 3 27 27 H 1.09003 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46900 * 184.99694 * 4 2 1 29 29 H 1.09003 * 109.47231 * 305.00386 * 4 2 1 30 30 H 0.97002 * 119.99934 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47334 * 174.99956 * 13 2 1 32 32 H 1.09003 * 109.47209 * 54.99878 * 13 2 1 33 33 H 1.00901 * 110.99981 * 303.95651 * 14 13 2 34 34 H 1.09004 * 109.51790 * 325.12717 * 15 14 13 35 35 H 1.08994 * 109.50140 * 62.49906 * 16 15 14 36 36 H 1.08998 * 109.50073 * 302.38093 * 16 15 14 37 37 H 1.09008 * 109.46522 * 299.16192 * 17 16 15 38 38 H 1.09004 * 109.46254 * 179.19669 * 17 16 15 39 39 H 1.09003 * 112.90438 * 43.75025 * 19 18 17 40 40 H 1.08999 * 113.61181 * 25.43268 * 20 19 18 41 41 H 1.08998 * 113.61680 * 254.52820 * 20 19 18 42 42 H 1.09002 * 113.61445 * 89.11830 * 21 20 19 43 43 H 1.09002 * 113.61408 * 219.93560 * 21 20 19 44 44 H 1.08992 * 113.61675 * 140.02412 * 22 21 20 45 45 H 1.09000 * 113.60973 * 270.92699 * 22 21 20 46 46 H 1.08997 * 109.46051 * 181.75677 * 23 18 17 47 47 H 1.09001 * 109.46248 * 301.72435 * 23 18 17 48 48 H 1.08996 * 109.50731 * 180.87807 * 24 23 18 49 49 H 1.09008 * 109.50432 * 60.76052 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 1.6447 0.2771 -4.7994 9 14 2.9627 -1.9890 -3.9028 10 1 2.0233 -3.1334 -4.0188 11 1 3.8107 -1.9193 -5.1198 12 1 3.8251 -2.1757 -2.7084 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.1248 -0.6271 3.6673 16 6 1.2359 -0.2230 4.8468 17 6 1.7702 -0.8696 6.1267 18 7 3.1520 -0.4302 6.3588 19 6 3.6506 -0.9207 7.6506 20 6 5.1332 -0.5983 7.9014 21 6 4.7402 -0.2971 9.3573 22 6 3.3288 0.0144 8.8318 23 6 4.0336 -0.8482 5.2614 24 6 3.5669 -0.2009 3.9556 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7995 -1.2055 29 1 1.6053 -1.7199 -1.2951 30 1 1.8913 -0.0463 -5.6800 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 1.9881 0.9874 2.3967 34 1 2.0832 -1.7080 3.5333 35 1 0.2158 -0.5616 4.6664 36 1 1.2462 0.8616 4.9553 37 1 1.7468 -1.9545 6.0227 38 1 1.1479 -0.5724 6.9709 39 1 3.3930 -1.9634 7.8365 40 1 5.4883 0.2756 7.3553 41 1 5.7914 -1.4607 7.7964 42 1 4.7805 -1.1693 10.0098 43 1 5.2509 0.5695 9.7771 44 1 2.5315 -0.3537 9.4773 45 1 3.1917 1.0555 8.5396 46 1 5.0552 -0.5354 5.4770 47 1 3.9996 -1.9331 5.1613 48 1 4.2120 -0.5237 3.1384 49 1 3.6138 0.8841 4.0501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602519975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:05 Heat of formation + Delta-G solvation = -16.886360 kcal Electronic energy + Delta-G solvation = -22314.352337 eV Core-core repulsion = 19274.930548 eV Total energy + Delta-G solvation = -3039.421790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78502 -39.06033 -37.54406 -35.39052 -34.06944 -31.85570 -31.29779 -29.20921 -26.90195 -26.62333 -25.38739 -24.01875 -23.72372 -22.84412 -21.25126 -20.37776 -20.17460 -18.91480 -17.61595 -16.58493 -16.32087 -16.26370 -15.81356 -15.76180 -15.65502 -15.02915 -14.71458 -14.63281 -14.48264 -14.15614 -13.54406 -13.50180 -13.33701 -13.19751 -13.07904 -12.83588 -12.67850 -12.60652 -12.37663 -12.22167 -12.09966 -11.77393 -11.72736 -11.69411 -11.45768 -11.43982 -11.27549 -11.11812 -11.02894 -10.89710 -10.73916 -9.28450 -9.19069 -8.26083 -6.28279 1.35265 1.36738 1.48550 2.37324 2.94163 3.08928 3.22928 3.61514 3.81723 3.82432 3.93003 4.05023 4.05409 4.10836 4.19303 4.31958 4.32913 4.46804 4.47391 4.53973 4.62613 4.71023 4.75748 4.83265 4.86173 4.91223 4.92465 4.95755 4.95988 5.00795 5.05606 5.09617 5.11373 5.12668 5.26014 5.33154 5.39250 5.40590 5.43219 5.52306 5.56589 5.71066 5.73381 6.14417 6.18370 6.25471 6.35538 6.53789 6.79362 7.35074 8.90693 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.036193 B = 0.002757 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.436998 B =10151.870986 C =10602.887658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 H 0.049 0.951 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.077 3.923 14 N -0.682 5.682 15 C 0.089 3.911 16 C -0.095 4.095 17 C 0.061 3.939 18 N -0.532 5.532 19 C 0.047 3.953 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.123 4.123 23 C 0.065 3.935 24 C -0.140 4.140 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.342 0.658 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.059 0.941 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 -4.346 30.396 31.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.053 0.947 7 C -0.196 4.196 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.052 4.052 14 N -0.312 5.312 15 C -0.021 4.021 16 C -0.133 4.133 17 C -0.067 4.067 18 N -0.257 5.257 19 C -0.061 4.061 20 C -0.171 4.171 21 C -0.174 4.174 22 C -0.161 4.161 23 C -0.064 4.064 24 C -0.180 4.180 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.117 -4.121 30.251 30.956 hybrid contribution 1.153 -1.067 -1.113 1.925 sum 6.270 -5.188 29.138 30.253 Atomic orbital electron populations 1.21497 0.95082 1.00607 1.00092 1.20882 0.96446 0.98431 0.93072 0.93219 1.19569 0.95803 0.95710 0.93379 1.21453 1.34237 1.08658 0.91226 0.94719 1.26015 0.97068 1.00993 0.95555 1.70076 1.49147 1.41598 0.98687 0.85683 0.79338 0.79538 0.78213 1.19349 1.21141 1.17122 1.21893 0.96951 0.97259 0.89100 1.60547 1.63829 1.05819 1.00979 1.21622 0.92560 0.97951 0.89948 1.21461 0.98612 1.01191 0.92071 1.22046 0.89546 0.96960 0.98159 1.62199 1.02094 1.59714 1.01730 1.23323 0.96619 0.97025 0.89159 1.23008 0.94866 1.01852 0.97337 1.22723 0.96586 1.02270 0.95868 1.22971 0.97414 0.99986 0.95737 1.21931 0.97195 0.96910 0.90348 1.22255 0.97316 1.01504 0.96878 0.91550 0.95479 0.93893 0.96680 0.96631 0.92693 0.95635 0.91576 0.83941 0.91727 0.91114 0.91588 0.95259 0.89894 0.91774 0.89909 0.91329 0.89434 0.90678 0.91243 0.90041 0.90101 0.95462 0.92202 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.89 71.98 0.64 -3.80 16 2 C -0.07 -2.71 2.48 -10.79 -0.03 -2.73 16 3 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 5 C -0.52 -30.14 8.96 25.60 0.23 -29.91 16 6 H 0.03 2.23 7.30 -2.91 -0.02 2.20 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 9 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 13 C 0.08 2.39 4.88 86.30 0.42 2.81 16 14 N -0.68 -17.77 5.71 -491.15 -2.80 -20.57 16 15 C 0.09 1.95 2.53 45.00 0.11 2.06 16 16 C -0.09 -1.84 5.70 30.65 0.17 -1.66 16 17 C 0.06 1.04 5.44 86.32 0.47 1.51 16 18 N -0.53 -9.10 4.64 -867.50 -4.02 -13.12 16 19 C 0.05 0.67 3.30 45.53 0.15 0.82 16 20 C -0.13 -1.67 6.44 31.12 0.20 -1.47 16 21 C -0.14 -1.43 8.07 31.12 0.25 -1.18 16 22 C -0.12 -1.54 7.90 31.21 0.25 -1.29 16 23 C 0.06 1.15 5.23 86.32 0.45 1.60 16 24 C -0.14 -2.81 5.35 30.65 0.16 -2.65 16 25 H 0.07 2.24 7.75 -2.38 -0.02 2.23 16 26 H 0.03 1.18 6.95 -2.39 -0.02 1.16 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 28 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 29 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.03 0.78 7.51 -2.39 -0.02 0.76 16 32 H 0.07 2.04 8.06 -2.39 -0.02 2.03 16 33 H 0.34 8.75 8.45 -89.69 -0.76 7.99 16 34 H 0.06 1.50 7.80 -2.38 -0.02 1.48 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 39 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 40 H 0.08 1.16 7.61 -2.39 -0.02 1.14 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 46 H 0.08 1.34 6.53 -2.39 -0.02 1.32 16 47 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.06 1.28 7.54 -2.39 -0.02 1.26 16 49 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 Total: -1.00 -63.97 369.15 -0.52 -64.50 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.07 Total: 18.46 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 4.05 Total: -35.66 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -6.53 Total: -94.25 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -63.97 -0.52 -64.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.611 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds