Wall clock time and date at job start Fri Apr 10 2020 17:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47024 * 2 1 4 4 C 1.53001 * 109.47008 * 119.99883 * 2 1 3 5 5 C 1.50696 * 109.46977 * 295.00165 * 4 2 1 6 6 H 1.07992 * 120.00277 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99617 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99984 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46961 * 60.00035 * 9 7 5 11 11 H 1.48496 * 109.47043 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47284 * 300.00306 * 9 7 5 13 13 C 1.53000 * 109.46958 * 239.99936 * 2 1 3 14 14 N 1.46902 * 109.47244 * 65.00036 * 13 2 1 15 15 C 1.46900 * 111.00166 * 179.97438 * 14 13 2 16 16 C 1.53122 * 109.52196 * 274.68329 * 15 14 13 17 17 C 1.53037 * 109.27862 * 182.44028 * 16 15 14 18 18 N 1.46850 * 109.52147 * 59.18186 * 17 16 15 19 19 C 1.46900 * 110.99945 * 174.16148 * 18 17 16 20 20 C 1.53012 * 109.46940 * 56.50865 * 19 18 17 21 21 C 1.52996 * 117.49837 * 243.50463 * 20 19 18 22 22 C 1.53001 * 117.49499 * 174.84502 * 20 19 18 23 23 C 1.46854 * 111.19566 * 298.25535 * 18 17 16 24 24 C 1.53034 * 109.52342 * 61.74527 * 23 18 17 25 25 H 1.09000 * 109.47139 * 59.99744 * 1 2 3 26 26 H 1.09005 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47246 * 299.99830 * 1 2 3 28 28 H 1.09005 * 109.47021 * 54.99990 * 4 2 1 29 29 H 1.08999 * 109.46575 * 174.99867 * 4 2 1 30 30 H 0.97007 * 120.00288 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46785 * 184.99686 * 13 2 1 32 32 H 1.08994 * 109.47205 * 304.99888 * 13 2 1 33 33 H 1.00907 * 110.99963 * 56.04122 * 14 13 2 34 34 H 1.08995 * 109.51851 * 34.87355 * 15 14 13 35 35 H 1.09005 * 109.50177 * 302.38044 * 16 15 14 36 36 H 1.08997 * 109.50153 * 62.49657 * 16 15 14 37 37 H 1.08994 * 109.46146 * 299.16347 * 17 16 15 38 38 H 1.08998 * 109.45920 * 179.19107 * 17 16 15 39 39 H 1.08993 * 109.47031 * 176.50913 * 19 18 17 40 40 H 1.08999 * 109.46850 * 296.51697 * 19 18 17 41 41 H 1.08999 * 115.54628 * 29.17897 * 20 19 18 42 42 H 1.09005 * 117.49789 * 0.02562 * 21 20 19 43 43 H 1.08998 * 117.49864 * 145.02289 * 21 20 19 44 44 H 1.09003 * 117.49840 * 214.98080 * 22 20 19 45 45 H 1.09004 * 117.49920 * 0.02562 * 22 20 19 46 46 H 1.09002 * 109.46173 * 301.72992 * 23 18 17 47 47 H 1.08997 * 109.45948 * 181.76343 * 23 18 17 48 48 H 1.08992 * 109.50425 * 180.87699 * 24 23 18 49 49 H 1.09005 * 109.50603 * 60.75654 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4765 6 1 1.0807 0.9745 2.3756 7 6 1.9923 -0.4023 3.7283 8 7 2.6755 -1.5193 3.8511 9 14 1.4987 0.5628 5.2496 10 1 0.0188 0.6705 5.3089 11 1 1.9936 -0.1373 6.4621 12 1 2.0918 1.9228 5.1872 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1258 -0.6266 -3.6672 16 6 3.5678 -0.1993 -3.9548 17 6 4.0355 -0.8461 -5.2605 18 7 3.1541 -0.4283 -6.3583 19 6 3.6536 -0.9182 -7.6500 20 6 3.7990 -2.4405 -7.5964 21 6 5.2061 -3.0215 -7.7488 22 6 4.1935 -3.1583 -8.8886 23 6 1.7725 -0.8689 -6.1269 24 6 1.2372 -0.2229 -4.8470 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2055 30 1 2.9228 -1.8423 4.7318 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2951 33 1 1.9882 0.9873 -2.3967 34 1 2.0849 -1.7075 -3.5335 35 1 3.6139 0.8857 -4.0491 36 1 4.2127 -0.5219 -3.1374 37 1 4.0022 -1.9309 -5.1608 38 1 5.0570 -0.5324 -5.4756 39 1 2.9503 -0.6479 -8.4376 40 1 4.6239 -0.4678 -7.8588 41 1 3.1120 -2.9549 -6.9244 42 1 6.0283 -2.3193 -7.8869 43 1 5.4448 -3.9185 -7.1774 44 1 3.7664 -4.1453 -9.0666 45 1 4.3498 -2.5462 -9.7769 46 1 1.7498 -1.9537 -6.0231 47 1 1.1504 -0.5720 -6.9713 48 1 0.2172 -0.5622 -4.6672 49 1 1.2467 0.8618 -4.9553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602521383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:17 Heat of formation + Delta-G solvation = 2.599335 kcal Electronic energy + Delta-G solvation = -22218.071415 eV Core-core repulsion = 19179.494589 eV Total energy + Delta-G solvation = -3038.576826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78720 -37.71191 -36.22870 -34.24993 -32.29039 -30.95478 -30.46086 -26.99614 -26.37018 -24.83729 -23.33590 -22.91962 -22.59373 -21.96879 -21.09502 -19.69067 -18.77105 -16.67508 -16.30151 -15.54120 -15.32122 -15.06682 -14.76497 -14.62181 -14.36547 -14.02642 -13.67200 -13.37725 -12.94755 -12.70891 -12.52050 -12.14360 -12.10580 -12.05429 -11.87240 -11.54662 -11.38884 -11.31253 -11.10000 -10.85814 -10.83086 -10.77508 -10.62563 -10.40225 -10.26337 -10.24087 -10.14495 -9.66185 -9.10106 -8.92419 -8.48174 -8.30346 -8.00139 -5.95288 -3.96294 3.36090 3.38510 3.40227 3.42943 3.76393 4.30191 4.41187 4.51987 4.55174 4.62856 4.74209 4.83310 4.97147 5.06978 5.16087 5.26878 5.27506 5.39986 5.40373 5.42958 5.50951 5.53944 5.58759 5.63874 5.74091 5.74902 5.76506 5.85144 5.90500 5.98001 6.03247 6.18264 6.23646 6.29957 6.46381 6.61347 6.73130 6.89030 6.92748 7.06376 7.22335 7.24491 7.44692 7.70502 7.74938 7.88816 8.05139 8.49422 9.09983 9.66855 11.16250 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.035334 B = 0.002641 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.244068 B =10600.961435 C =11027.070390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.682 5.682 15 C 0.087 3.913 16 C -0.148 4.148 17 C 0.063 3.937 18 N -0.532 5.532 19 C 0.086 3.914 20 C -0.191 4.191 21 C -0.177 4.177 22 C -0.177 4.177 23 C 0.055 3.945 24 C -0.103 4.103 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.338 0.662 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -0.685 -25.147 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.311 5.311 15 C -0.024 4.024 16 C -0.187 4.187 17 C -0.066 4.066 18 N -0.255 5.255 19 C -0.042 4.042 20 C -0.211 4.211 21 C -0.214 4.214 22 C -0.214 4.214 23 C -0.074 4.074 24 C -0.141 4.141 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.051 0.949 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.701 -0.557 -25.022 25.086 hybrid contribution 0.867 -0.420 1.034 1.413 sum 2.569 -0.977 -23.988 24.145 Atomic orbital electron populations 1.21585 0.95769 1.00495 1.00119 1.21196 0.95964 0.98894 0.94075 0.92879 1.19115 0.95854 0.95547 0.90487 1.21207 1.34593 1.08246 0.91004 0.92619 1.25025 0.95367 0.95106 0.99092 1.69957 1.39108 1.21258 1.23445 0.86688 0.78906 0.80100 0.82482 1.20262 1.21400 1.20318 1.22160 0.97107 0.97543 0.89584 1.60636 1.63526 1.05710 1.01255 1.21593 0.91643 0.98520 0.90607 1.22361 0.98193 1.01621 0.96523 1.21970 0.96282 0.97700 0.90606 1.62205 1.02393 1.59088 1.01829 1.21840 1.00990 0.89471 0.91936 1.23140 0.99048 0.97693 1.01219 1.23023 0.92675 1.03174 1.02578 1.22915 1.03996 1.01902 0.92627 1.22133 0.89160 0.97510 0.98554 1.21556 0.98988 1.01431 0.92160 0.93913 0.94257 0.92840 0.96633 0.96995 0.93071 0.95864 0.91808 0.84428 0.91238 0.91027 0.91511 0.94528 0.91139 0.90440 0.90638 0.87851 0.88740 0.89022 0.89002 0.88732 0.94852 0.90823 0.90949 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.13 4.88 -3.82 -0.02 1.11 16 14 N -0.68 -9.90 5.71 -106.60 -0.61 -10.51 16 15 C 0.09 1.07 2.53 -67.59 -0.17 0.90 16 16 C -0.15 -1.69 5.35 -26.65 -0.14 -1.83 16 17 C 0.06 0.64 5.00 -3.83 -0.02 0.62 16 18 N -0.53 -5.12 4.86 -234.66 -1.14 -6.26 16 19 C 0.09 0.69 5.65 -3.82 -0.02 0.66 16 20 C -0.19 -1.49 4.23 -90.62 -0.38 -1.87 16 21 C -0.18 -1.29 10.18 -26.69 -0.27 -1.56 16 22 C -0.18 -1.19 10.25 -26.69 -0.27 -1.46 16 23 C 0.05 0.52 5.17 -3.83 -0.02 0.50 16 24 C -0.10 -1.12 5.70 -26.65 -0.15 -1.27 16 25 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.13 6.95 -51.93 -0.36 0.76 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.02 0.41 7.51 -51.93 -0.39 0.02 16 32 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.34 4.76 8.44 -39.29 -0.33 4.43 16 34 H 0.07 0.93 7.80 -51.93 -0.41 0.52 16 35 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.07 0.82 7.54 -51.93 -0.39 0.43 16 37 H 0.04 0.39 7.06 -51.93 -0.37 0.02 16 38 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.08 0.57 8.03 -51.93 -0.42 0.16 16 40 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 41 H 0.10 0.92 6.31 -51.93 -0.33 0.59 16 42 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.32 6.61 -51.93 -0.34 -0.02 16 47 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -29.27 374.22 -11.82 -41.10 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -9.55 Total: 0.61 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -1.88 Total: -20.94 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -1.01 Total: -43.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.27 -11.82 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602521383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.698 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds