Wall clock time and date at job start Fri Apr 10 2020 17:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46615 * 2 1 4 4 C 1.53001 * 109.46972 * 240.00152 * 2 1 3 5 5 C 1.50696 * 109.47217 * 64.99947 * 4 2 1 6 6 H 1.08003 * 120.00412 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99991 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99765 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47140 * 90.00764 * 9 7 5 11 11 H 1.48509 * 109.46605 * 210.00296 * 9 7 5 12 12 H 1.48498 * 109.47531 * 330.00258 * 9 7 5 13 13 C 1.52995 * 109.47238 * 120.00148 * 2 1 3 14 14 N 1.46899 * 109.47169 * 185.30859 * 13 2 1 15 15 C 1.47925 * 110.99980 * 64.94164 * 14 13 2 16 16 C 1.54926 * 104.80559 * 146.23021 * 15 14 13 17 17 C 1.55191 * 101.68309 * 323.07268 * 16 15 14 18 18 C 1.47167 * 110.99943 * 185.65054 * 14 13 2 19 19 C 1.52836 * 110.11351 * 356.10432 * 18 14 13 20 20 C 1.53102 * 109.26846 * 178.37171 * 19 18 14 21 21 N 1.46847 * 109.48381 * 301.34091 * 20 19 18 22 22 C 1.46905 * 110.99770 * 186.16534 * 21 20 19 23 23 C 1.46847 * 111.27671 * 62.00901 * 21 20 19 24 24 C 1.52839 * 110.08881 * 117.47410 * 18 14 13 25 25 H 1.08997 * 109.47217 * 184.34187 * 1 2 3 26 26 H 1.09001 * 109.47340 * 304.34344 * 1 2 3 27 27 H 1.09005 * 109.47221 * 64.34226 * 1 2 3 28 28 H 1.09002 * 109.46890 * 185.00186 * 4 2 1 29 29 H 1.08997 * 109.47368 * 304.99423 * 4 2 1 30 30 H 0.96997 * 120.00011 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47086 * 65.30675 * 13 2 1 32 32 H 1.09003 * 109.47263 * 305.30858 * 13 2 1 33 33 H 1.08994 * 110.36884 * 265.06187 * 15 14 13 34 34 H 1.09003 * 110.36940 * 27.40305 * 15 14 13 35 35 H 1.09003 * 110.98427 * 81.17382 * 16 15 14 36 36 H 1.09000 * 110.98416 * 204.93317 * 16 15 14 37 37 H 1.08999 * 110.71715 * 277.09270 * 17 16 15 38 38 H 1.09002 * 110.72067 * 153.82295 * 17 16 15 39 39 H 1.09000 * 109.50156 * 58.43077 * 19 18 14 40 40 H 1.08999 * 109.54064 * 298.33503 * 19 18 14 41 41 H 1.08996 * 109.46758 * 61.34716 * 20 19 18 42 42 H 1.09000 * 109.46688 * 181.33720 * 20 19 18 43 43 H 1.08998 * 109.47229 * 60.00392 * 22 21 20 44 44 H 1.09000 * 109.46673 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.46838 * 299.99866 * 22 21 20 46 46 H 1.09003 * 109.47263 * 177.97818 * 23 21 20 47 47 H 1.09005 * 109.47312 * 57.99136 * 23 21 20 48 48 H 1.08999 * 109.50456 * 301.54517 * 24 18 14 49 49 H 1.08997 * 109.50736 * 61.67268 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6763 -1.5187 -3.8512 9 14 1.4983 0.5627 -5.2496 10 1 2.5630 1.5430 -5.5823 11 1 1.3120 -0.3715 -6.3889 12 1 0.2266 1.2832 -4.9872 13 6 2.0400 -0.7213 1.2492 14 7 3.5034 -0.6113 1.3149 15 6 3.9215 0.7958 1.4977 16 6 5.1972 0.7192 2.3734 17 6 4.8516 -0.4527 3.3303 18 6 4.0424 -1.4062 2.4300 19 6 2.8999 -2.0247 3.2350 20 6 3.4822 -2.8793 4.3640 21 7 4.3399 -3.9259 3.7936 22 6 4.7997 -4.8549 4.8346 23 6 5.4763 -3.3459 3.0665 24 6 4.9586 -2.5066 1.8955 25 1 -0.3633 -1.0247 0.0778 26 1 -0.3634 0.5798 0.8485 27 1 -0.3634 0.4450 -0.9264 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 2.9235 -1.8416 -4.7318 31 1 1.7563 -1.7727 1.2029 32 1 1.6011 -0.2653 2.1367 33 1 4.1495 1.2520 0.5344 34 1 3.1424 1.3596 2.0107 35 1 6.0727 0.4838 1.7682 36 1 5.3463 1.6457 2.9279 37 1 4.2445 -0.1026 4.1652 38 1 5.7591 -0.9383 3.6890 39 1 2.2914 -2.6501 2.5818 40 1 2.2825 -1.2329 3.6592 41 1 4.0719 -2.2489 5.0296 42 1 2.6703 -3.3411 4.9258 43 1 3.9382 -5.3277 5.3060 44 1 5.4333 -5.6195 4.3850 45 1 5.3693 -4.3067 5.5850 46 1 6.1115 -4.1463 2.6869 47 1 6.0537 -2.7126 3.7401 48 1 4.4002 -3.1439 1.2098 49 1 5.8007 -2.0559 1.3704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:32 Heat of formation + Delta-G solvation = -1.304921 kcal Electronic energy + Delta-G solvation = -23887.392161 eV Core-core repulsion = 20848.646033 eV Total energy + Delta-G solvation = -3038.746128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.49528 -37.44114 -35.16279 -32.39706 -32.20604 -31.08177 -30.36116 -27.04615 -26.89192 -25.20278 -24.22826 -23.36769 -22.41518 -21.92393 -20.69949 -18.57244 -17.79438 -16.26823 -16.23708 -15.59774 -15.10146 -15.03118 -14.64600 -14.43035 -14.26010 -13.66663 -13.26740 -12.90575 -12.75896 -12.62923 -12.39338 -12.19344 -12.12076 -11.86597 -11.58610 -11.42470 -11.29502 -11.05626 -10.94611 -10.82323 -10.77555 -10.70072 -10.51562 -10.30984 -10.23983 -10.09663 -9.93376 -9.51645 -8.99847 -8.77129 -8.34267 -8.18260 -7.68556 -5.83330 -3.83637 3.39601 3.45907 3.48701 3.88386 4.24859 4.57907 4.68523 4.80376 4.95007 5.02199 5.09576 5.15524 5.22032 5.39313 5.49119 5.50400 5.51898 5.56301 5.59526 5.64251 5.71817 5.73454 5.79742 5.84227 5.89072 5.94495 6.02925 6.11359 6.16090 6.24193 6.26345 6.34471 6.41244 6.46927 6.51309 6.57759 6.68073 7.03289 7.04803 7.07275 7.13626 7.38535 7.55898 7.68943 7.91642 8.14177 8.27539 8.63214 9.24585 9.78177 11.27696 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.004366 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.293670 B = 6411.343925 C = 6607.313602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.053 0.947 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.060 3.940 14 N -0.505 5.505 15 C 0.047 3.953 16 C -0.130 4.130 17 C -0.135 4.135 18 C 0.105 3.895 19 C -0.128 4.128 20 C 0.061 3.939 21 N -0.542 5.542 22 C 0.026 3.974 23 C 0.056 3.944 24 C -0.093 4.093 25 H 0.043 0.957 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.009 0.991 30 H 0.257 0.743 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.078 0.922 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.845 -1.413 18.858 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.000 4.000 5 C -0.552 4.552 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.068 4.068 14 N -0.227 5.227 15 C -0.081 4.081 16 C -0.168 4.168 17 C -0.173 4.173 18 C 0.015 3.985 19 C -0.166 4.166 20 C -0.068 4.068 21 N -0.266 5.266 22 C -0.122 4.122 23 C -0.072 4.072 24 C -0.131 4.131 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.036 0.964 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.092 0.908 47 H 0.049 0.951 48 H 0.097 0.903 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.818 -1.979 17.903 18.645 hybrid contribution -0.133 1.243 0.412 1.316 sum 4.685 -0.736 18.315 18.919 Atomic orbital electron populations 1.21718 0.96617 1.00346 1.00454 1.21245 0.94163 0.99158 0.95848 0.92849 1.19020 0.97361 0.94461 0.89157 1.21331 1.34257 1.08099 0.91468 0.93092 1.24979 0.95546 0.95052 0.98785 1.69977 1.39233 1.21151 1.23008 0.86740 0.78801 0.79906 0.83376 1.20897 1.21419 1.20100 1.22485 0.86291 1.00970 0.97010 1.63477 1.11187 1.07478 1.40559 1.23035 0.95124 0.90192 0.99728 1.22712 0.98839 0.97723 0.97496 1.22947 1.00015 0.96629 0.97758 1.21496 0.94033 0.93622 0.89361 1.22182 0.98160 0.98876 0.97420 1.22081 0.96328 0.92428 0.95949 1.61875 1.19905 1.18230 1.26633 1.22335 1.00113 0.96256 0.93505 1.22238 0.91745 0.97534 0.95723 1.21462 0.99263 0.95830 0.96556 0.93792 0.95479 0.91671 0.94933 0.97300 0.93317 0.90916 0.96394 0.89807 0.94243 0.90790 0.91536 0.92011 0.91219 0.89854 0.91650 0.95158 0.91119 0.91568 0.91443 0.96106 0.90832 0.95057 0.90301 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.07 37.16 0.34 -2.24 16 2 C -0.09 -1.77 2.29 -90.62 -0.21 -1.98 16 3 H 0.05 1.13 7.16 -51.93 -0.37 0.76 16 4 C 0.04 0.97 4.39 -27.88 -0.12 0.85 16 5 C -0.51 -14.64 8.35 -34.44 -0.29 -14.92 16 6 H 0.05 1.42 7.07 -52.48 -0.37 1.05 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 9 Si 0.88 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.06 1.06 3.06 -3.83 -0.01 1.05 16 14 N -0.50 -8.54 4.22 -216.21 -0.91 -9.45 16 15 C 0.05 0.72 5.52 -2.24 -0.01 0.71 16 16 C -0.13 -1.62 7.08 -24.55 -0.17 -1.80 16 17 C -0.14 -1.62 4.78 -25.00 -0.12 -1.74 16 18 C 0.10 1.47 0.87 -131.05 -0.11 1.35 16 19 C -0.13 -1.67 3.53 -26.76 -0.09 -1.76 16 20 C 0.06 0.68 5.27 -3.80 -0.02 0.66 16 21 N -0.54 -6.41 4.90 -242.88 -1.19 -7.60 16 22 C 0.03 0.24 9.59 60.07 0.58 0.82 16 23 C 0.06 0.66 5.26 -3.80 -0.02 0.64 16 24 C -0.09 -1.32 5.20 -26.77 -0.14 -1.46 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.36 6.84 -51.93 -0.36 1.01 16 28 H 0.03 0.92 7.63 -51.93 -0.40 0.53 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.34 6.31 -51.93 -0.33 1.01 16 32 H 0.02 0.29 6.76 -51.93 -0.35 -0.06 16 33 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 34 H 0.04 0.59 7.70 -51.93 -0.40 0.19 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.71 7.70 -51.93 -0.40 0.31 16 38 H 0.07 0.78 5.97 -51.93 -0.31 0.47 16 39 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 40 H 0.06 0.82 6.94 -51.93 -0.36 0.46 16 41 H 0.03 0.33 7.29 -51.93 -0.38 -0.05 16 42 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 47 H 0.03 0.35 6.31 -51.93 -0.33 0.02 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -30.37 356.96 -10.81 -41.19 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -9.30 Total: -1.60 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.51 Total: -18.27 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -1.37 Total: -43.79 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.37 -10.81 -41.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.882 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds