Wall clock time and date at job start Fri Apr 10 2020 17:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46615 * 2 1 4 4 C 1.53001 * 109.46972 * 240.00152 * 2 1 3 5 5 C 1.50696 * 109.47217 * 64.99947 * 4 2 1 6 6 H 1.08003 * 120.00412 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99991 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99765 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47140 * 90.00764 * 9 7 5 11 11 H 1.48509 * 109.46605 * 210.00296 * 9 7 5 12 12 H 1.48498 * 109.47531 * 330.00258 * 9 7 5 13 13 C 1.52995 * 109.47238 * 120.00148 * 2 1 3 14 14 N 1.46899 * 109.47169 * 185.30859 * 13 2 1 15 15 C 1.47925 * 110.99980 * 64.94164 * 14 13 2 16 16 C 1.54926 * 104.80559 * 146.23021 * 15 14 13 17 17 C 1.55191 * 101.68309 * 323.07268 * 16 15 14 18 18 C 1.47167 * 110.99943 * 185.65054 * 14 13 2 19 19 C 1.52836 * 110.11351 * 356.10432 * 18 14 13 20 20 C 1.53102 * 109.26846 * 178.37171 * 19 18 14 21 21 N 1.46847 * 109.48381 * 301.34091 * 20 19 18 22 22 C 1.46905 * 110.99770 * 186.16534 * 21 20 19 23 23 C 1.46847 * 111.27671 * 62.00901 * 21 20 19 24 24 C 1.52839 * 110.08881 * 117.47410 * 18 14 13 25 25 H 1.08997 * 109.47217 * 184.34187 * 1 2 3 26 26 H 1.09001 * 109.47340 * 304.34344 * 1 2 3 27 27 H 1.09005 * 109.47221 * 64.34226 * 1 2 3 28 28 H 1.09002 * 109.46890 * 185.00186 * 4 2 1 29 29 H 1.08997 * 109.47368 * 304.99423 * 4 2 1 30 30 H 0.96997 * 120.00011 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47086 * 65.30675 * 13 2 1 32 32 H 1.09003 * 109.47263 * 305.30858 * 13 2 1 33 33 H 1.08994 * 110.36884 * 265.06187 * 15 14 13 34 34 H 1.09003 * 110.36940 * 27.40305 * 15 14 13 35 35 H 1.09003 * 110.98427 * 81.17382 * 16 15 14 36 36 H 1.09000 * 110.98416 * 204.93317 * 16 15 14 37 37 H 1.08999 * 110.71715 * 277.09270 * 17 16 15 38 38 H 1.09002 * 110.72067 * 153.82295 * 17 16 15 39 39 H 1.09000 * 109.50156 * 58.43077 * 19 18 14 40 40 H 1.08999 * 109.54064 * 298.33503 * 19 18 14 41 41 H 1.08996 * 109.46758 * 61.34716 * 20 19 18 42 42 H 1.09000 * 109.46688 * 181.33720 * 20 19 18 43 43 H 1.08998 * 109.47229 * 60.00392 * 22 21 20 44 44 H 1.09000 * 109.46673 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.46838 * 299.99866 * 22 21 20 46 46 H 1.09003 * 109.47263 * 177.97818 * 23 21 20 47 47 H 1.09005 * 109.47312 * 57.99136 * 23 21 20 48 48 H 1.08999 * 109.50456 * 301.54517 * 24 18 14 49 49 H 1.08997 * 109.50736 * 61.67268 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6763 -1.5187 -3.8512 9 14 1.4983 0.5627 -5.2496 10 1 2.5630 1.5430 -5.5823 11 1 1.3120 -0.3715 -6.3889 12 1 0.2266 1.2832 -4.9872 13 6 2.0400 -0.7213 1.2492 14 7 3.5034 -0.6113 1.3149 15 6 3.9215 0.7958 1.4977 16 6 5.1972 0.7192 2.3734 17 6 4.8516 -0.4527 3.3303 18 6 4.0424 -1.4062 2.4300 19 6 2.8999 -2.0247 3.2350 20 6 3.4822 -2.8793 4.3640 21 7 4.3399 -3.9259 3.7936 22 6 4.7997 -4.8549 4.8346 23 6 5.4763 -3.3459 3.0665 24 6 4.9586 -2.5066 1.8955 25 1 -0.3633 -1.0247 0.0778 26 1 -0.3634 0.5798 0.8485 27 1 -0.3634 0.4450 -0.9264 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 2.9235 -1.8416 -4.7318 31 1 1.7563 -1.7727 1.2029 32 1 1.6011 -0.2653 2.1367 33 1 4.1495 1.2520 0.5344 34 1 3.1424 1.3596 2.0107 35 1 6.0727 0.4838 1.7682 36 1 5.3463 1.6457 2.9279 37 1 4.2445 -0.1026 4.1652 38 1 5.7591 -0.9383 3.6890 39 1 2.2914 -2.6501 2.5818 40 1 2.2825 -1.2329 3.6592 41 1 4.0719 -2.2489 5.0296 42 1 2.6703 -3.3411 4.9258 43 1 3.9382 -5.3277 5.3060 44 1 5.4333 -5.6195 4.3850 45 1 5.3693 -4.3067 5.5850 46 1 6.1115 -4.1463 2.6869 47 1 6.0537 -2.7126 3.7401 48 1 4.4002 -3.1439 1.2098 49 1 5.8007 -2.0559 1.3704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602626784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:32 Heat of formation + Delta-G solvation = -20.320724 kcal Electronic energy + Delta-G solvation = -23888.216748 eV Core-core repulsion = 20848.646033 eV Total energy + Delta-G solvation = -3039.570715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60967 -38.55535 -36.78184 -34.43752 -33.22300 -32.37091 -31.53592 -28.95756 -27.97756 -26.59309 -25.29101 -24.97367 -23.83520 -22.94430 -21.93869 -20.15425 -18.94302 -18.43395 -17.32963 -16.72825 -16.58061 -16.13597 -15.98018 -15.75584 -15.36653 -15.01332 -14.52194 -14.48190 -14.21144 -13.87681 -13.70951 -13.38331 -13.24676 -13.17092 -13.04593 -12.79079 -12.67704 -12.60287 -12.39220 -12.25443 -12.09884 -12.02533 -11.96284 -11.75303 -11.56524 -11.42977 -11.29782 -11.11548 -10.89893 -10.80299 -10.46043 -9.19140 -8.95890 -8.10145 -6.19126 1.39668 1.41082 1.51601 2.45010 2.99663 3.08773 3.22335 3.62364 3.76265 3.90339 4.03839 4.15316 4.18246 4.25797 4.34744 4.36616 4.41354 4.53024 4.55028 4.57184 4.61328 4.68589 4.71628 4.75391 4.81334 4.86717 4.89909 4.94459 4.99675 5.00614 5.04875 5.06538 5.16263 5.20005 5.23927 5.33994 5.41027 5.44913 5.49997 5.52308 5.68498 5.95873 6.04051 6.16992 6.20288 6.32533 6.39836 6.42062 6.99698 7.47987 9.01417 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.004366 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.293670 B = 6411.343925 C = 6607.313602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 H 0.050 0.950 4 C 0.051 3.949 5 C -0.529 4.529 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.075 3.925 14 N -0.536 5.536 15 C 0.045 3.955 16 C -0.122 4.122 17 C -0.123 4.123 18 C 0.102 3.898 19 C -0.123 4.123 20 C 0.066 3.934 21 N -0.564 5.564 22 C 0.028 3.972 23 C 0.065 3.935 24 C -0.091 4.091 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.044 0.956 28 H -0.001 1.001 29 H -0.026 1.026 30 H 0.259 0.741 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.033 0.967 46 H 0.077 0.923 47 H 0.048 0.952 48 H 0.039 0.961 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -0.210 21.090 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.098 4.098 3 H 0.068 0.932 4 C 0.014 3.986 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.053 4.053 14 N -0.260 5.260 15 C -0.083 4.083 16 C -0.160 4.160 17 C -0.161 4.161 18 C 0.012 3.988 19 C -0.162 4.162 20 C -0.063 4.063 21 N -0.289 5.289 22 C -0.120 4.120 23 C -0.063 4.063 24 C -0.129 4.129 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.017 0.983 29 H -0.008 1.008 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.717 -0.772 20.153 20.713 hybrid contribution -0.086 0.821 -0.321 0.885 sum 4.632 0.049 19.832 20.366 Atomic orbital electron populations 1.21635 0.95101 1.00822 1.00991 1.21106 0.95431 0.98408 0.94834 0.93187 1.18784 0.95000 0.93132 0.91676 1.21738 1.34056 1.08365 0.92546 0.92556 1.25910 0.95434 0.96053 1.02442 1.70134 1.40496 1.22985 1.23901 0.85585 0.78948 0.78441 0.78889 1.20040 1.21010 1.18776 1.22224 0.87259 0.99721 0.96111 1.63344 1.10682 1.08885 1.43055 1.22999 0.96989 0.89277 0.99027 1.22676 0.96858 0.99270 0.97150 1.22886 1.00345 0.95555 0.97364 1.21560 0.94587 0.93583 0.89040 1.22099 0.97563 0.98983 0.97518 1.22048 0.96742 0.92320 0.95154 1.61833 1.20191 1.18905 1.28009 1.22365 1.00689 0.95878 0.93069 1.22113 0.91859 0.97471 0.94900 1.21405 0.98548 0.95896 0.97096 0.93863 0.91810 0.93655 0.98305 1.00801 0.93218 0.92356 0.93845 0.92759 0.93294 0.91548 0.88975 0.90383 0.89814 0.92492 0.90729 0.93667 0.89980 0.90781 0.91102 0.94873 0.90480 0.93373 0.94234 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.07 71.98 0.65 -4.22 16 2 C -0.08 -3.35 2.29 -10.80 -0.02 -3.38 16 3 H 0.05 2.15 7.16 -2.39 -0.02 2.13 16 4 C 0.05 2.83 4.39 29.85 0.13 2.96 16 5 C -0.53 -31.07 8.35 25.60 0.21 -30.86 16 6 H 0.06 3.18 7.07 -2.91 -0.02 3.16 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.93 -59.50 13.29 21.45 0.28 -59.22 16 9 Si 0.96 46.01 29.54 68.60 2.03 48.03 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.07 2.66 3.06 86.30 0.26 2.92 16 14 N -0.54 -18.58 4.22 -837.95 -3.53 -22.11 16 15 C 0.04 1.37 5.52 86.76 0.48 1.85 16 16 C -0.12 -2.83 7.08 32.00 0.23 -2.61 16 17 C -0.12 -2.63 4.78 31.72 0.15 -2.48 16 18 C 0.10 2.80 0.87 3.74 0.00 2.80 16 19 C -0.12 -3.08 3.53 30.57 0.11 -2.97 16 20 C 0.07 1.33 5.27 86.35 0.46 1.78 16 21 N -0.56 -12.48 4.90 -922.32 -4.52 -17.00 16 22 C 0.03 0.45 9.59 127.69 1.22 1.67 16 23 C 0.06 1.45 5.26 86.34 0.45 1.91 16 24 C -0.09 -2.67 5.20 30.57 0.16 -2.51 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.88 6.84 -2.38 -0.02 1.87 16 28 H 0.00 -0.09 7.63 -2.39 -0.02 -0.11 16 29 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.06 2.24 6.31 -2.39 -0.02 2.22 16 32 H 0.04 1.33 6.76 -2.39 -0.02 1.31 16 33 H 0.05 1.94 8.10 -2.39 -0.02 1.93 16 34 H 0.05 1.39 7.70 -2.39 -0.02 1.37 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.46 7.70 -2.39 -0.02 1.44 16 38 H 0.08 1.59 5.97 -2.39 -0.01 1.57 16 39 H 0.06 1.72 6.34 -2.39 -0.02 1.71 16 40 H 0.07 1.70 6.94 -2.39 -0.02 1.69 16 41 H 0.05 0.80 7.29 -2.39 -0.02 0.78 16 42 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 45 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 47 H 0.05 0.93 6.31 -2.38 -0.02 0.92 16 48 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.43 356.96 0.10 -68.33 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.88 Total: 14.72 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.96 Total: -32.75 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -7.77 Total: -98.33 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -68.43 0.10 -68.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.009 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds