Wall clock time and date at job start Fri Apr 10 2020 17:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47326 * 2 1 4 4 C 1.53007 * 109.47135 * 240.00102 * 2 1 3 5 5 C 1.50698 * 109.46748 * 64.99751 * 4 2 1 6 6 H 1.07995 * 120.00142 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99431 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00495 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99689 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47189 * 60.00278 * 9 7 5 11 11 H 1.48501 * 109.46709 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46948 * 299.99882 * 9 7 5 13 13 C 1.52997 * 109.47707 * 119.99934 * 2 1 3 14 14 N 1.46897 * 109.47175 * 295.00281 * 13 2 1 15 15 C 1.46898 * 111.00375 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47447 * 179.97438 * 15 14 13 17 17 C 1.53120 * 109.52168 * 65.12962 * 16 15 14 18 18 C 1.53166 * 109.20873 * 177.56393 * 17 16 15 19 19 N 1.46845 * 109.55463 * 300.85535 * 18 17 16 20 20 C 1.46900 * 111.00045 * 185.84196 * 19 18 17 21 21 C 1.52995 * 117.50216 * 124.41429 * 20 19 18 22 22 C 1.52997 * 60.00053 * 252.50795 * 21 20 19 23 23 C 1.46848 * 111.19518 * 61.74755 * 19 18 17 24 24 C 1.53037 * 109.52381 * 298.25146 * 23 19 18 25 25 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46920 * 299.99709 * 1 2 3 27 27 H 1.08993 * 109.47356 * 59.99670 * 1 2 3 28 28 H 1.09003 * 109.46884 * 184.99675 * 4 2 1 29 29 H 1.08996 * 109.46534 * 304.99773 * 4 2 1 30 30 H 0.96994 * 119.99912 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47533 * 174.99958 * 13 2 1 32 32 H 1.09003 * 109.46852 * 54.99670 * 13 2 1 33 33 H 1.00904 * 111.00172 * 303.94994 * 14 13 2 34 34 H 1.09007 * 109.47104 * 60.00094 * 15 14 13 35 35 H 1.08998 * 109.47070 * 300.00228 * 15 14 13 36 36 H 1.09002 * 109.52286 * 305.00190 * 16 15 14 37 37 H 1.09004 * 109.49930 * 297.56596 * 17 16 15 38 38 H 1.08997 * 109.50353 * 57.67812 * 17 16 15 39 39 H 1.09003 * 109.44926 * 180.83262 * 18 17 16 40 40 H 1.09002 * 109.44150 * 60.87652 * 18 17 16 41 41 H 1.09007 * 115.55160 * 270.12401 * 20 19 18 42 42 H 1.09000 * 117.49984 * 0.02562 * 21 20 19 43 43 H 1.09003 * 117.50208 * 145.01551 * 21 20 19 44 44 H 1.08998 * 117.49681 * 252.50849 * 22 21 20 45 45 H 1.09003 * 117.49956 * 107.48459 * 22 21 20 46 46 H 1.09006 * 109.46097 * 178.23945 * 23 19 18 47 47 H 1.08996 * 109.46046 * 58.26729 * 23 19 18 48 48 H 1.08996 * 109.50616 * 299.24564 * 24 23 19 49 49 H 1.08993 * 109.53667 * 179.13827 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9923 -0.4022 -3.7283 8 7 2.6755 -1.5193 -3.8512 9 14 1.4974 0.5622 -5.2497 10 1 2.0894 1.9226 -5.1878 11 1 1.9925 -0.1378 -6.4622 12 1 0.0174 0.6686 -5.3086 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1250 -0.6270 3.6672 16 6 1.7027 0.1910 4.8892 17 6 0.1755 0.1943 4.9999 18 6 -0.2369 0.9634 6.2586 19 7 0.3572 0.3261 7.4407 20 6 -0.1284 0.9536 8.6770 21 6 -0.7825 0.0457 9.7203 22 6 -1.6417 1.0059 8.8955 23 6 1.8241 0.3534 7.3777 24 6 2.2982 -0.4338 6.1539 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.1263 -0.7994 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 2.9220 -1.8425 -4.7319 31 1 3.1264 -0.7994 1.2055 32 1 1.6055 -1.7198 1.2951 33 1 1.9883 0.9873 2.3966 34 1 3.2119 -0.7049 3.6405 35 1 1.6907 -1.6248 3.7296 36 1 2.0625 1.2146 4.7844 37 1 -0.2520 0.6763 4.1206 38 1 -0.1868 -0.8316 5.0654 39 1 -1.3231 0.9555 6.3492 40 1 0.1140 1.9928 6.1860 41 1 0.4620 1.7947 9.0406 42 1 -0.8522 -1.0173 9.4896 43 1 -0.6224 0.2892 10.7707 44 1 -2.0470 1.8812 9.4032 45 1 -2.2771 0.5748 8.1218 46 1 2.2348 -0.0976 8.2811 47 1 2.1651 1.3857 7.2999 48 1 1.9692 -1.4696 6.2376 49 1 3.3862 -0.4009 6.0984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602637997.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:52 Heat of formation + Delta-G solvation = -17.528557 kcal Electronic energy + Delta-G solvation = -21949.911241 eV Core-core repulsion = 18910.461604 eV Total energy + Delta-G solvation = -3039.449637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.38379 -38.55022 -37.35836 -35.54219 -34.12449 -32.35062 -31.73085 -28.96214 -27.66794 -26.03020 -24.35915 -24.15225 -22.88325 -22.76217 -21.56842 -20.89520 -20.39216 -18.47783 -17.62891 -16.64701 -16.53452 -16.07802 -15.75297 -15.68858 -15.52440 -15.21083 -14.81323 -14.67012 -14.28369 -13.99760 -13.80299 -13.30980 -13.20287 -13.12794 -12.97419 -12.90509 -12.72336 -12.54447 -12.33802 -12.19758 -12.07523 -11.98597 -11.67408 -11.50148 -11.41432 -11.27184 -11.19043 -11.07756 -10.95601 -10.77798 -10.52605 -9.27155 -9.21408 -8.16898 -6.26183 1.40252 1.43257 1.50869 2.42379 2.79856 2.94227 3.16160 3.25682 3.83233 3.88893 4.00417 4.04700 4.11856 4.16786 4.29409 4.34115 4.37460 4.46391 4.50343 4.54812 4.62523 4.62677 4.79379 4.80371 4.80829 4.90783 4.92284 4.96358 4.99139 5.02414 5.05188 5.09833 5.14284 5.27299 5.29654 5.33593 5.41349 5.47583 5.51912 5.54521 5.58536 5.82318 5.89527 6.10503 6.16554 6.25170 6.32231 6.54590 6.89749 7.41908 8.94945 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.042892 B = 0.002418 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.650980 B =11574.697146 C =11974.100950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.054 0.946 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.681 5.681 15 C 0.067 3.933 16 C -0.076 4.076 17 C -0.096 4.096 18 C 0.061 3.939 19 N -0.521 5.521 20 C -0.008 4.008 21 C -0.160 4.160 22 C -0.173 4.173 23 C 0.064 3.936 24 C -0.107 4.107 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.037 0.963 28 H -0.015 1.015 29 H -0.012 1.012 30 H 0.262 0.738 31 H 0.015 0.985 32 H 0.058 0.942 33 H 0.342 0.658 34 H 0.027 0.973 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.065 0.935 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 5.710 27.532 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.312 5.312 15 C -0.062 4.062 16 C -0.095 4.095 17 C -0.134 4.134 18 C -0.066 4.066 19 N -0.246 5.246 20 C -0.117 4.117 21 C -0.198 4.198 22 C -0.210 4.210 23 C -0.063 4.063 24 C -0.145 4.145 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.051 0.949 48 H 0.084 0.916 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.223 4.823 27.439 28.345 hybrid contribution 1.284 0.983 -1.300 2.075 sum -3.938 5.807 26.140 27.065 Atomic orbital electron populations 1.21471 0.94666 1.00260 1.00505 1.21004 0.96711 0.98372 0.93106 0.92773 1.19020 0.94022 0.94679 0.92871 1.21612 1.34437 1.08578 0.92053 0.92042 1.25985 0.95306 0.96150 1.02734 1.70099 1.40296 1.22954 1.24313 0.85544 0.78939 0.78755 0.78083 1.19201 1.21071 1.19215 1.21821 0.96338 0.97299 0.89645 1.60441 1.64003 1.05726 1.00995 1.21984 0.96891 0.98141 0.89204 1.21118 0.96143 0.98954 0.93329 1.21477 0.95021 1.00507 0.96409 1.22094 0.99522 0.95378 0.89650 1.61726 1.07473 1.54466 1.00904 1.22500 0.95982 0.99680 0.93550 1.23087 1.02814 0.97396 0.96491 1.23097 0.92085 1.02537 1.03307 1.22027 0.86743 0.98671 0.98898 1.21575 1.00214 0.99871 0.92864 0.94830 0.91335 0.94434 0.99682 0.99318 0.92963 0.96656 0.92337 0.84059 0.95507 0.91806 0.91513 0.90999 0.92587 0.90709 0.95225 0.89027 0.89094 0.87449 0.87432 0.88965 0.90120 0.94878 0.91615 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.89 71.98 0.64 -3.66 16 2 C -0.07 -3.01 2.48 -10.79 -0.03 -3.03 16 3 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.22 8.41 25.60 0.22 -30.01 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -57.88 13.29 21.45 0.28 -57.60 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.08 2.72 5.07 86.30 0.44 3.15 16 14 N -0.68 -18.60 5.46 -513.89 -2.81 -21.41 16 15 C 0.07 1.55 5.08 86.30 0.44 1.99 16 16 C -0.08 -1.46 2.39 -10.71 -0.03 -1.49 16 17 C -0.10 -1.94 5.25 30.69 0.16 -1.78 16 18 C 0.06 1.10 5.34 86.37 0.46 1.56 16 19 N -0.52 -9.07 4.80 -870.85 -4.18 -13.25 16 20 C -0.01 -0.13 5.30 44.91 0.24 0.11 16 21 C -0.16 -2.06 10.46 30.59 0.32 -1.74 16 22 C -0.17 -2.23 9.70 30.59 0.30 -1.93 16 23 C 0.06 1.02 5.43 86.33 0.47 1.49 16 24 C -0.11 -1.78 5.38 30.65 0.16 -1.62 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 2.27 7.75 -2.38 -0.02 2.25 16 27 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 28 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.49 16 31 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.34 8.76 8.73 -89.69 -0.78 7.97 16 34 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.59 7.83 -2.39 -0.02 1.57 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.32 6.68 -2.39 -0.02 1.30 16 40 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.09 1.26 8.08 -2.38 -0.02 1.24 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.33 7.23 -2.39 -0.02 1.31 16 46 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 47 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -62.93 378.66 -0.21 -63.13 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.09 Total: 17.18 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 4.38 Total: -34.94 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -6.71 Total: -92.26 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -62.93 -0.21 -63.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602637997.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.606 kcal (2) G-P(sol) polarization free energy of solvation -62.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds