Wall clock time and date at job start Fri Apr 10 2020 17:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47728 * 2 1 4 4 C 1.53003 * 109.47074 * 240.00009 * 2 1 3 5 5 C 1.50703 * 109.46819 * 65.00498 * 4 2 1 6 6 H 1.08005 * 120.00140 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99958 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00342 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99782 * 179.72264 * 7 5 4 10 10 H 1.48495 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46809 * 119.99918 * 9 7 5 12 12 H 1.48500 * 109.47007 * 239.99668 * 9 7 5 13 13 C 1.53001 * 109.47109 * 120.00764 * 2 1 3 14 14 N 1.46898 * 109.46605 * 293.79616 * 13 2 1 15 15 C 1.48529 * 111.00606 * 294.15933 * 14 13 2 16 16 C 1.54931 * 103.23218 * 200.28188 * 15 14 13 17 17 C 1.54596 * 102.92288 * 37.41534 * 16 15 14 18 18 H 1.08998 * 110.31325 * 96.95585 * 17 16 15 19 19 N 1.46903 * 110.30988 * 219.12991 * 17 16 15 20 20 C 1.48532 * 110.99954 * 197.76109 * 19 17 16 21 21 C 1.54937 * 103.22738 * 159.71872 * 20 19 17 22 22 C 1.54601 * 102.92038 * 322.58670 * 21 20 19 23 23 C 1.47901 * 110.99566 * 315.15894 * 19 17 16 24 24 C 1.47903 * 110.99713 * 176.76483 * 14 13 2 25 25 H 1.08999 * 109.92344 * 26.49304 * 24 14 13 26 26 C 1.52999 * 109.91670 * 265.19730 * 24 14 13 27 27 H 1.09000 * 109.46881 * 54.84894 * 1 2 3 28 28 H 1.08998 * 109.47200 * 174.85109 * 1 2 3 29 29 H 1.08996 * 109.46920 * 294.84984 * 1 2 3 30 30 H 1.08996 * 109.47558 * 305.00864 * 4 2 1 31 31 H 1.08997 * 109.47238 * 184.99820 * 4 2 1 32 32 H 0.97002 * 120.00404 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47409 * 53.79545 * 13 2 1 34 34 H 1.09005 * 109.47249 * 173.80078 * 13 2 1 35 35 H 1.09005 * 110.66835 * 318.71890 * 15 14 13 36 36 H 1.08998 * 110.66647 * 81.84391 * 15 14 13 37 37 H 1.09007 * 110.72637 * 155.76937 * 16 15 14 38 38 H 1.09000 * 110.72283 * 278.87721 * 16 15 14 39 39 H 1.08995 * 110.66699 * 278.15101 * 20 19 17 40 40 H 1.09003 * 110.66882 * 41.28594 * 20 19 17 41 41 H 1.08993 * 110.72586 * 204.22974 * 21 20 19 42 42 H 1.09001 * 110.87859 * 81.01365 * 21 20 19 43 43 H 1.08998 * 110.31015 * 263.04101 * 22 21 20 44 44 H 1.08996 * 110.38905 * 140.91745 * 22 21 20 45 45 H 1.08995 * 109.91780 * 333.50372 * 23 19 17 46 46 H 1.08992 * 109.91690 * 94.60830 * 23 19 17 47 47 H 1.09005 * 109.47539 * 48.12408 * 26 24 14 48 48 H 1.09006 * 109.47329 * 168.12442 * 26 24 14 49 49 H 1.08999 * 109.47206 * 288.12510 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9744 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6754 -1.5191 -3.8513 9 14 1.4915 0.5589 -5.2500 10 1 0.7301 1.7673 -4.8440 11 1 2.7067 0.9675 -5.9995 12 1 0.6393 -0.2948 -6.1162 13 6 2.0400 -0.7214 1.2492 14 7 1.6763 0.0520 2.4439 15 6 2.3856 1.3567 2.4698 16 6 2.3153 1.7690 3.9616 17 6 2.4909 0.4227 4.7010 18 1 3.5303 0.2882 5.0004 19 7 1.6097 0.3671 5.8751 20 6 2.0493 -0.6904 6.8209 21 6 1.3897 -0.2672 8.1575 22 6 1.5001 1.2745 8.1245 23 6 1.6597 1.6346 6.6357 24 6 2.0859 -0.6541 3.6773 25 1 2.9346 -1.3053 3.4680 26 6 0.9152 -1.4757 4.2207 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3633 -1.0235 -0.0922 29 1 -0.3633 0.4319 0.9325 30 1 1.6053 -1.7197 -1.2953 31 1 3.1263 -0.7995 -1.2057 32 1 2.9227 -1.8420 -4.7320 33 1 1.5888 -1.7120 1.3063 34 1 3.1244 -0.8185 1.1954 35 1 3.4214 1.2379 2.1519 36 1 1.8715 2.0865 1.8444 37 1 3.1254 2.4545 4.2110 38 1 1.3485 2.2161 4.1931 39 1 1.6832 -1.6668 6.5035 40 1 3.1354 -0.6969 6.9131 41 1 1.9398 -0.6752 9.0053 42 1 0.3456 -0.5785 8.1911 43 1 2.3726 1.6035 8.6889 44 1 0.5955 1.7287 8.5287 45 1 2.6183 2.1273 6.4737 46 1 0.8477 2.2894 6.3199 47 1 0.4714 -2.0554 3.4113 48 1 1.2748 -2.1515 4.9967 49 1 0.1654 -0.8058 4.6413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602657114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:23 Heat of formation + Delta-G solvation = 1.637716 kcal Electronic energy + Delta-G solvation = -23098.652447 eV Core-core repulsion = 20060.033922 eV Total energy + Delta-G solvation = -3038.618525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12426 -37.94526 -35.21150 -32.74574 -31.60662 -31.50542 -28.90630 -28.74438 -26.68811 -25.32070 -24.88173 -22.75747 -21.98273 -21.48223 -20.20428 -19.35296 -18.62679 -16.68947 -16.29125 -16.13702 -15.48612 -14.74744 -14.50006 -14.31885 -14.17780 -13.66841 -13.49249 -13.01834 -12.73789 -12.72528 -12.32695 -12.16984 -11.95249 -11.78656 -11.61278 -11.44880 -11.28205 -11.13116 -10.97439 -10.89404 -10.86579 -10.79944 -10.68269 -10.58226 -10.48056 -10.24104 -10.08498 -9.56835 -9.07438 -8.88579 -8.48579 -8.29485 -7.99992 -5.94141 -3.94868 3.34258 3.41742 3.46143 3.77193 4.23189 4.38208 4.42824 4.51429 4.67897 4.75902 4.81578 5.04091 5.15788 5.26050 5.35936 5.39291 5.41761 5.50203 5.54555 5.58283 5.64257 5.65760 5.72007 5.74004 5.80689 5.83483 5.93575 6.00847 6.06022 6.11801 6.19901 6.24800 6.31062 6.49692 6.60855 6.68521 6.74436 6.81859 6.97198 7.10946 7.18338 7.26779 7.38581 7.53797 7.74282 7.90879 8.06779 8.51350 9.11923 9.68395 11.17503 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.043549 B = 0.003119 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.792511 B = 8974.896732 C = 9197.990764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.053 3.947 14 N -0.503 5.503 15 C 0.038 3.962 16 C -0.120 4.120 17 C 0.070 3.930 18 H 0.046 0.954 19 N -0.498 5.498 20 C 0.026 3.974 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.036 3.964 24 C 0.072 3.928 25 H 0.043 0.957 26 C -0.125 4.125 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.258 0.742 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.046 0.954 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 3.959 24.217 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.074 4.074 14 N -0.227 5.227 15 C -0.090 4.090 16 C -0.158 4.158 17 C -0.040 4.040 18 H 0.064 0.936 19 N -0.222 5.222 20 C -0.102 4.102 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.092 4.092 24 C -0.037 4.037 25 H 0.061 0.939 26 C -0.182 4.182 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.623 3.810 23.858 24.215 hybrid contribution 1.719 0.426 -0.776 1.934 sum 0.096 4.236 23.082 23.467 Atomic orbital electron populations 1.21573 0.95745 1.00657 0.99951 1.21175 0.95959 0.98957 0.93671 0.92741 1.19141 0.95803 0.95569 0.90570 1.21282 1.34295 1.08222 0.90972 0.92549 1.25024 0.95406 0.95105 0.99083 1.69979 1.39335 1.21270 1.23192 0.86586 0.78243 0.80139 0.83349 1.19742 1.21160 1.21099 1.22476 0.97490 0.97399 0.90072 1.64758 1.53869 1.02877 1.01194 1.23146 0.97087 0.93155 0.95608 1.22658 1.02401 0.95589 0.95126 1.22701 0.93575 0.96381 0.91326 0.93639 1.64898 1.48665 1.03348 1.05271 1.23496 0.97654 0.97155 0.91853 1.22469 1.01585 0.95250 0.96810 1.22401 1.01945 0.96442 0.96194 1.22833 1.00843 0.93002 0.92518 1.22320 0.96991 0.94321 0.90032 0.93886 1.21722 0.98466 0.98762 0.99298 0.93125 0.94177 0.93692 0.96623 0.97080 0.93209 0.91341 0.95466 0.93987 0.89658 0.91746 0.89791 0.89135 0.94131 0.91390 0.90687 0.91849 0.91109 0.93939 0.90289 0.93380 0.93502 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.87 37.16 0.33 -2.13 16 2 C -0.08 -1.66 2.30 -90.62 -0.21 -1.87 16 3 H 0.05 1.16 6.83 -51.93 -0.35 0.81 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.50 8.47 -34.44 -0.29 -14.80 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.05 0.97 4.07 -3.82 -0.02 0.95 16 14 N -0.50 -7.82 4.35 -222.57 -0.97 -8.79 16 15 C 0.04 0.54 5.65 -1.90 -0.01 0.53 16 16 C -0.12 -1.38 5.39 -24.87 -0.13 -1.51 16 17 C 0.07 0.80 2.64 -66.35 -0.17 0.63 16 18 H 0.05 0.52 7.72 -51.93 -0.40 0.12 16 19 N -0.50 -5.14 3.40 -220.88 -0.75 -5.89 16 20 C 0.03 0.23 5.93 -1.90 -0.01 0.22 16 21 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 22 C -0.13 -0.96 6.93 -25.37 -0.18 -1.13 16 23 C 0.04 0.32 5.42 -2.75 -0.01 0.30 16 24 C 0.07 0.98 3.06 -66.64 -0.20 0.77 16 25 H 0.04 0.61 7.77 -51.93 -0.40 0.20 16 26 C -0.12 -1.59 8.32 37.16 0.31 -1.28 16 27 H 0.05 1.07 7.11 -51.93 -0.37 0.70 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.83 7.66 -51.93 -0.40 0.43 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.03 0.51 7.99 -51.93 -0.41 0.09 16 35 H 0.04 0.61 7.91 -51.93 -0.41 0.20 16 36 H 0.09 1.26 7.55 -51.93 -0.39 0.87 16 37 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.08 0.99 7.20 -51.93 -0.37 0.62 16 39 H 0.09 0.81 5.53 -51.93 -0.29 0.53 16 40 H 0.04 0.36 7.74 -51.93 -0.40 -0.04 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.37 7.33 -51.93 -0.38 -0.01 16 46 H 0.08 0.72 7.75 -51.93 -0.40 0.31 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.51 5.71 -51.93 -0.30 0.22 16 49 H 0.08 1.07 7.05 -51.93 -0.37 0.71 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -29.85 361.53 -10.94 -40.78 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -9.38 Total: -3.55 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.00 Total: -18.34 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.98 Total: -41.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.85 -10.94 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.422 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds